View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18799_low_27 (Length: 221)

Name: NF18799_low_27
Description: NF18799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18799_low_27
NF18799_low_27
[»] chr5 (4 HSPs)
chr5 (1-120)||(32796298-32796417)
chr5 (49-120)||(19670676-19670747)
chr5 (49-120)||(32795582-32795653)
chr5 (55-122)||(26896584-26896651)
[»] scaffold0007 (1 HSPs)
scaffold0007 (49-118)||(260217-260286)
[»] chr2 (3 HSPs)
chr2 (49-122)||(10128505-10128578)
chr2 (50-120)||(8761225-8761296)
chr2 (49-120)||(37965532-37965604)
[»] chr7 (4 HSPs)
chr7 (49-120)||(7961783-7961854)
chr7 (69-120)||(1103164-1103215)
chr7 (49-120)||(11269963-11270034)
chr7 (49-126)||(1716681-1716758)
[»] chr1 (5 HSPs)
chr1 (49-120)||(22840975-22841046)
chr1 (49-120)||(22827079-22827150)
chr1 (49-111)||(22826684-22826746)
chr1 (49-118)||(24272755-24272824)
chr1 (49-122)||(24284827-24284900)
[»] chr6 (9 HSPs)
chr6 (49-112)||(13556056-13556119)
chr6 (49-120)||(13558027-13558098)
chr6 (48-120)||(16403530-16403601)
chr6 (49-120)||(2921894-2921965)
chr6 (49-120)||(2923210-2923282)
chr6 (49-120)||(11678846-11678917)
chr6 (80-120)||(27340686-27340726)
chr6 (80-120)||(27401426-27401466)
chr6 (49-118)||(11677130-11677199)
[»] chr4 (7 HSPs)
chr4 (49-120)||(27272577-27272648)
chr4 (57-120)||(53469713-53469776)
chr4 (49-122)||(10395967-10396040)
chr4 (49-119)||(29235173-29235244)
chr4 (81-126)||(13816943-13816988)
chr4 (62-120)||(21206356-21206414)
chr4 (50-120)||(53472595-53472663)
[»] chr3 (3 HSPs)
chr3 (49-122)||(31141408-31141481)
chr3 (49-117)||(25889633-25889701)
chr3 (57-111)||(30046435-30046489)
[»] chr8 (1 HSPs)
chr8 (49-89)||(42001905-42001945)


Alignment Details
Target: chr5 (Bit Score: 92; Significance: 7e-45; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 32796298 - 32796417
Alignment:
Q  1 tgtgctgaggggaatgtctaggcgagtaagattcaagtattggagatttattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtc 100  Q
    ||||||||||| ||||||| |||||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| |    
T  32796298 tgtgctgagggcaatgtctgggcgagtaagattcaagttttggagatttatttgtgcaaggaatactaacacacaaggcttttatttatatgactaagcc 32796397  T
Q  101 tttgcatatttcttcatatt 120  Q
    ||||||||||||||||||||    
T  32796398 tttgcatatttcttcatatt 32796417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 19670747 - 19670676
Alignment:
Q  49 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatatt 120  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19670747 tattggtacaagtaatactaacacacaaggcttttatttatatgactaagcctttgcatatttcttcatatt 19670676  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 32795582 - 32795653
Alignment:
Q  49 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatatt 120  Q
    ||||||| |||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||    
T  32795582 tattggtacaagtaatactgacacgcaagacttttattaatatgactaagtctttgcatatttcttcatatt 32795653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 26896651 - 26896584
Alignment:
Q  55 tgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattct 122  Q
    |||||| |||||| |||||||| |  |||||||||||| | |||||||||||||||||||| ||||||    
T  26896651 tgcaagaaatactaacacacaatgtctttatttatatggccaagtctttgcatatttcttcctattct 26896584  T

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Target: scaffold0007 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 260217 - 260286
Alignment:
Q  49 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcata 118  Q
    |||||||||||| |||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  260217 tattggtgcaagaaatactaacacacaaggattttatttatttgactaagtctttgcatatttcttcata 260286  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 10128578 - 10128505
Alignment:
Q  49 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattct 122  Q
    |||||||||||| |||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||||||||    
T  10128578 tattggtgcaagaaatactaacacacaagacttttatttatatgaccaagtctttccatatttcttcatattct 10128505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 8761225 - 8761296
Alignment:
Q  50 attggtgcaagtaatactgacacacaaggcttttatttatatga-ctaagtctttgcatatttcttcatatt 120  Q
    ||||||||||| |||||| ||||||||| ||||||||||||||| | |||| ||||||||||||||||||||    
T  8761225 attggtgcaagaaatactaacacacaagacttttatttatatgaccaaagtatttgcatatttcttcatatt 8761296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 37965532 - 37965604
Alignment:
Q  49 tattggtgcaagtaatactgacacacaagg-cttttatttatatgactaagtctttgcatatttcttcatatt 120  Q
    |||||||||||| |||||| |||||||| | |||||||||||||  | |||||||||||||||||||||||||    
T  37965532 tattggtgcaagaaatactaacacacaaagacttttatttatatatccaagtctttgcatatttcttcatatt 37965604  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 7961854 - 7961783
Alignment:
Q  49 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatatt 120  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||    
T  7961854 tattggtgcaagaaatactaacacacaaggcttttatttatatgaccaaacctttgcatatttcttcatatt 7961783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 1103215 - 1103164
Alignment:
Q  69 acacacaaggcttttatttatatgactaagtctttgcatatttcttcatatt 120  Q
    |||||||||||||||||||||||| | |||||||| ||||||||||||||||    
T  1103215 acacacaaggcttttatttatatggccaagtctttacatatttcttcatatt 1103164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 11270034 - 11269963
Alignment:
Q  49 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatatt 120  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||| ||   |||  |||||||||||||||    
T  11270034 tattggtgcaactaatactaacacacaaggcttttatttatatgaccaaacttttttatatttcttcatatt 11269963  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 1716681 - 1716758
Alignment:
Q  49 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattcttcga 126  Q
    ||||| |||||| |||| | ||||||||| | ||||||||||||   |||||||| ||||||| ||||||||||||||    
T  1716681 tattgatgcaagaaatattaacacacaagacctttatttatatggtcaagtctttacatattttttcatattcttcga 1716758  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 22841046 - 22840975
Alignment:
Q  49 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatatt 120  Q
    |||||||||||| |||||| ||||||||||||||||||| |||||| ||| |||||||||||||||||||||    
T  22841046 tattggtgcaagaaatactaacacacaaggcttttatttttatgaccaagcctttgcatatttcttcatatt 22840975  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 22827079 - 22827150
Alignment:
Q  49 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatatt 120  Q
    |||||||||||| ||||   |||||||||||||||||||||||||| ||  |||||||||||||||||||||    
T  22827079 tattggtgcaagaaatatgaacacacaaggcttttatttatatgaccaaacctttgcatatttcttcatatt 22827150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 22826684 - 22826746
Alignment:
Q  49 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatattt 111  Q
    |||||||||||| |||||| ||||| |||||||||||||||||||| ||| ||||||| ||||    
T  22826684 tattggtgcaagaaatactaacacataaggcttttatttatatgaccaagcctttgcagattt 22826746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 24272824 - 24272755
Alignment:
Q  49 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcata 118  Q
    |||||||||||| |||||| ||||||||||| ||||| |||||    |||||||||||||||||||||||    
T  24272824 tattggtgcaagaaatactaacacacaaggcctttatatatattgtcaagtctttgcatatttcttcata 24272755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 24284900 - 24284827
Alignment:
Q  49 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattct 122  Q
    |||||||||||| |||| | |||||||| || |||||||||||  | || | ||||||||||| ||||||||||    
T  24284900 tattggtgcaagaaatattaacacacaatgcctttatttatatagccaaatatttgcatatttgttcatattct 24284827  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 13556056 - 13556119
Alignment:
Q  49 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttc 112  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| ||| |||||||||||||    
T  13556056 tattggtgcaagaaatactaacacacaaggcttttatttatatgaccaagcctttgcatatttc 13556119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 13558027 - 13558098
Alignment:
Q  49 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatatt 120  Q
    |||||||||| | |||||| |||||||| ||||||||||||||||| ||| |||||||||||||||||||||    
T  13558027 tattggtgcatgaaatactaacacacaatgcttttatttatatgaccaagcctttgcatatttcttcatatt 13558098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 16403601 - 16403530
Alignment:
Q  48 ttattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatatt 120  Q
    |||||||||||| |||||   ||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  16403601 ttattggtgcaaataatataaacacacaagacttttatttatatgactaagtc-ttgcatatttcttcatatt 16403530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 2921894 - 2921965
Alignment:
Q  49 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatatt 120  Q
    |||||||||||| |||||| ||||| ||| ||||||||||||| || ||||| |||||||||||||||||||    
T  2921894 tattggtgcaagaaatactaacacataagacttttatttatattaccaagtcattgcatatttcttcatatt 2921965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 2923210 - 2923282
Alignment:
Q  49 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtc-tttgcatatttcttcatatt 120  Q
    |||| ||||||| | |||| ||||||||| |||||||||||||||| ||| | ||||||||||||||||||||    
T  2923210 tattagtgcaagaagtactaacacacaagacttttatttatatgaccaagccttttgcatatttcttcatatt 2923282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 11678917 - 11678846
Alignment:
Q  49 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatatt 120  Q
    ||||||||  || |||||| |||||||||  ||||||||| ||||| ||| |||||||||||||||||||||    
T  11678917 tattggtgttagaaatactaacacacaagagttttatttacatgaccaagcctttgcatatttcttcatatt 11678846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 27340686 - 27340726
Alignment:
Q  80 ttttatttatatgactaagtctttgcatatttcttcatatt 120  Q
    ||||||||||||||| ||| |||||||||||||||||||||    
T  27340686 ttttatttatatgaccaagcctttgcatatttcttcatatt 27340726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 27401426 - 27401466
Alignment:
Q  80 ttttatttatatgactaagtctttgcatatttcttcatatt 120  Q
    ||||||||||||||| ||| |||||||||||||||||||||    
T  27401426 ttttatttatatgaccaagcctttgcatatttcttcatatt 27401466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 11677199 - 11677130
Alignment:
Q  49 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcata 118  Q
    ||||||||  || |||||| |||||||||  ||||||||||||||  ||  |||||||||||||||||||    
T  11677199 tattggtgttagaaatactaacacacaagagttttatttatatgatcaatcctttgcatatttcttcata 11677130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 27272648 - 27272577
Alignment:
Q  49 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatatt 120  Q
    |||||||||||| |||||| ||||||||| |||||||||||||||| ||  |||||||||||||||||||||    
T  27272648 tattggtgcaagaaatactaacacacaagacttttatttatatgaccaaacctttgcatatttcttcatatt 27272577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 53469713 - 53469776
Alignment:
Q  57 caagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatatt 120  Q
    |||| |||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  53469713 caagaaatactaacacacaagacttttatttatatgaccaagtctttgcatatttcttcatatt 53469776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 10396040 - 10395967
Alignment:
Q  49 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattct 122  Q
    ||||| |||||| |||||| |||||||||||||||||||||||| |  ||||||||||||||||||||| ||||    
T  10396040 tattgatgcaagaaatactaacacacaaggcttttatttatatggccgagtctttgcatatttcttcatcttct 10395967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 29235173 - 29235244
Alignment:
Q  49 tattggtgcaagtaat-actgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatat 119  Q
    |||||||||||| ||| ||| ||||||||||| |||||||||||| | |||||||||||||||| |||||||    
T  29235173 tattggtgcaagaaattactaacacacaaggcctttatttatatggccaagtctttgcatattttttcatat 29235244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 13816988 - 13816943
Alignment:
Q  81 tttatttatatgactaagtctttgcatatttcttcatattcttcga 126  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||    
T  13816988 tttatttatatgaccaagtcttcgcatatttcttcatattcttcga 13816943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 21206414 - 21206356
Alignment:
Q  62 aatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatatt 120  Q
    |||||| | ||||| |||||||||||||||||| ||| ||||| |||||||||| ||||    
T  21206414 aatactaatacacatggcttttatttatatgaccaagcctttgtatatttcttcgtatt 21206356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 53472595 - 53472663
Alignment:
Q  50 attggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatatt 120  Q
    ||||||||| | |||||| ||||||||  |||||||||||||| | |||||||||||||||||||| ||||    
T  53472595 attggtgcatgaaatactaacacacaaa-cttttatttatatggc-aagtctttgcatatttcttcgtatt 53472663  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 31141481 - 31141408
Alignment:
Q  49 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcatattct 122  Q
    |||||||| ||| |||||| |||| |||| |||||||||||||| |||| ||||||||||||||||| ||||||    
T  31141481 tattggtgtaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctattct 31141408  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 25889701 - 25889633
Alignment:
Q  49 tattggtgcaagtaatactgacacacaaggcttttatttatatgactaagtctttgcatatttcttcat 117  Q
    |||||||||||| |||||| ||| ||||| |||||||||||||||| ||  |||||||||  |||||||    
T  25889701 tattggtgcaagaaatactaacatacaagacttttatttatatgaccaaacctttgcataactcttcat 25889633  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 30046489 - 30046435
Alignment:
Q  57 caagtaatactgacacacaaggcttttatttatatgactaagtctttgcatattt 111  Q
    |||| |||||| |||||||| |||||||||||||||   ||||||||||||||||    
T  30046489 caagaaatactaacacacaaagcttttatttatatggtcaagtctttgcatattt 30046435  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 42001945 - 42001905
Alignment:
Q  49 tattggtgcaagtaatactgacacacaaggcttttatttat 89  Q
    |||||||||||||| |||| ||||||||| |||||||||||    
T  42001945 tattggtgcaagtattactaacacacaagacttttatttat 42001905  T

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