View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18799_low_3 (Length: 447)
Name: NF18799_low_3
Description: NF18799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18799_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 4637712 - 4637434
Alignment:
| Q |
1 |
aaatataacatacatattacatagagacttaattgaaactgagagttgttatttcaatatatttatgaacttttccatatgagggggattactcaatata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4637712 |
aaatataacatacatattacatagagacttaattgaaactgagagttgttatttcaatatatttatgaacttttccatatgagggggattactcaatata |
4637613 |
T |
|
| Q |
101 |
ccgtcagtatcagagaagattagaaaacacatctgaagcagatatactttactgtagttcactatcagtttgagttgagtctttttctgaccgtgccnnn |
200 |
Q |
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| T |
4637612 |
ccgtcagtaccagagaagattagaaaacacatctgaagcagatatactttactgtagttcactatcagtttgagttgagtctttttctgaccgtgccttt |
4637513 |
T |
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| Q |
201 |
nnnnccactgtcaccatcactatgttcagtcacacatgacccacaaacacaatgataaacatgaggaaatcttagttgg |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4637512 |
ttttccactgtcaccatcactatgttcagtcacacatgacccacaaacacaatgataaacatgaggaaatcttagttgg |
4637434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 349 - 429
Target Start/End: Complemental strand, 4637364 - 4637284
Alignment:
| Q |
349 |
tgtaactaaataaaaattgttcaaatatcttattcattttttatagaagataaatctagacaagtgaagcatccctcatgc |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4637364 |
tgtaactaaataaaaattgttcaaatatcttattcattttttatagaagataaatctagacaagtgaagcacccctcatgc |
4637284 |
T |
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