View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18799_low_4 (Length: 424)

Name: NF18799_low_4
Description: NF18799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18799_low_4
NF18799_low_4
[»] chr5 (3 HSPs)
chr5 (219-424)||(31528280-31528485)
chr5 (5-157)||(31528547-31528699)
chr5 (264-420)||(31497561-31497712)
[»] chr3 (3 HSPs)
chr3 (270-379)||(42159814-42159921)
chr3 (279-379)||(25428732-25428830)
chr3 (280-379)||(17642654-17642751)
[»] chr1 (1 HSPs)
chr1 (311-358)||(11794981-11795028)
[»] chr8 (1 HSPs)
chr8 (312-353)||(39418146-39418187)
[»] chr6 (1 HSPs)
chr6 (275-378)||(23095048-23095149)
[»] chr2 (1 HSPs)
chr2 (270-353)||(38216462-38216543)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 219 - 424
Target Start/End: Complemental strand, 31528485 - 31528280
Alignment:
Q  219 tttattttcctttgatagttaaaaatgcatttgagaaannnnnnnagaaggttttagagagtttagataaattattcaaattctttcaatgattttacaa 318  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31528485 tttattttcctttgatagttaaaaatgcatttgagaaatttttttagaaggttttagagagtttagataaattattcaaattctttcaatgattttacaa 31528386  T
Q  319 tattctcaaaattaaaaatatatattaatcataaatattttcttttcatactctaaaaaaccaatctctcaaatatacaaggccgaaaatttctctcttt 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31528385 tattctcaaaattaaaaatatatattaatcataaatattttctttttatactctaaaaaaccaatctctcaaatatacaaggccgaaaatttctctcttt 31528286  T
Q  419 tccctc 424  Q
    ||||||    
T  31528285 tccctc 31528280  T

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Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 5 - 157
Target Start/End: Complemental strand, 31528699 - 31528547
Alignment:
Q  5 tgtcgaataatatctcgaatatgattatctatggtggaaggaacttgtaggcaaaccnnnnnnntgaaagtaaagttcacctcgaatattttaaaaataa 104  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| |||||||||||||||||||    
T  31528699 tgtctaataatatctcgaatatgattatctatggtggaaggaacttgtaggcaaaccaaaaaaatgaaagtaaagttcacatcgaatattttaaaaataa 31528600  T
Q  105 cagnnnnnnnnnntgaatttaaggctatggcttggtggttaggatagagctct 157  Q
    |||          ||||||||||||||||||||||||||||||||||||||||    
T  31528599 cagaaaaaaaaaatgaatttaaggctatggcttggtggttaggatagagctct 31528547  T

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Target: chr5; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 264 - 420
Target Start/End: Complemental strand, 31497712 - 31497561
Alignment:
Q  264 agaaggttttagagagtttagataaattattcaaa-ttctttcaatgattttacaatattctcaaaattaaaaatatatattaatcataaatattttctt 362  Q
    |||| |||||| ||||||||||||||||||||||| ||||||||| |  |||| ||||||||||||||||| ||||| |  || ||||||||||||||||    
T  31497712 agaaagttttaaagagtttagataaattattcaaaattctttcaacgtctttataatattctcaaaattaagaatatgt--tagtcataaatattttctt 31497615  T
Q  363 ttcatactctaaaaaaccaatctctcaaatatacaaggccgaaaatttctctcttttc 420  Q
    | ||||||||| ||||||||||||||||||    ||||||| ||||||||||||||||    
T  31497614 tccatactctagaaaaccaatctctcaaat----aaggccggaaatttctctcttttc 31497561  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 42159921 - 42159814
Alignment:
Q  270 ttttagagagtttagataaattattcaaattctttcaatgattttacaatattctcaaaattaaaaatatatattaatcataaatattttcttttcatac 369  Q
    |||| ||||| ||| ||||||| ||||||||||||||||||||||| |||| ||||||||||  ||| |||||||||| ||||  |||||||| |||| |    
T  42159921 tttttgagagcttaaataaattcttcaaattctttcaatgattttataatactctcaaaatt--aaagatatattaattataagcattttcttctcattc 42159824  T
Q  370 tctaaaaaac 379  Q
    |||| |||||    
T  42159823 tctacaaaac 42159814  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 379
Target Start/End: Original strand, 25428732 - 25428830
Alignment:
Q  279 gtttagataaattattcaaattctttcaatgattttacaatattctcaaaattaaaaatatatattaatcataaatattttcttttcatactctaaaaaa 378  Q
    ||||| ||||||| |||||||||  || ||| | ||| |||||||| |||||||||| ||||  |||||||||| |||| | || |||| ||||||||||    
T  25428732 gtttatataaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtata--ttaatcataagtattattttatcattctctaaaaaa 25428829  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 379
Target Start/End: Original strand, 17642654 - 17642751
Alignment:
Q  280 tttagataaattattcaaattctttcaatgattttacaatattctcaaaattaaaaatatatattaatcataaatattttcttttcatactctaaaaaac 379  Q
    |||| ||||||| |||||||||  || ||| | ||| |||||||| |||||||||| ||||  |||||||||||||||   || |||| |||||||||||    
T  17642654 tttatataaatttttcaaattcaatccatgttgttataatattcttaaaattaaaagtata--ttaatcataaatattagtttatcattctctaaaaaac 17642751  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 358
Target Start/End: Complemental strand, 11795028 - 11794981
Alignment:
Q  311 ttttacaatattctcaaaattaaaaatatatattaatcataaatattt 358  Q
    ||||| |||| ||||||| ||||||||||||||||||||||| |||||    
T  11795028 ttttataatactctcaaacttaaaaatatatattaatcataagtattt 11794981  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Original strand, 39418146 - 39418187
Alignment:
Q  312 tttacaatattctcaaaattaaaaatatatattaatcataaa 353  Q
    |||| |||||| ||||||| ||||||||||||||||||||||    
T  39418146 tttataatattttcaaaataaaaaatatatattaatcataaa 39418187  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 378
Target Start/End: Complemental strand, 23095149 - 23095048
Alignment:
Q  275 gagagtttagataaattattcaaattctttcaatgattttacaatattctcaaaattaaaaatatatattaatcataaatattttcttttcatactctaa 374  Q
    ||||||||| || |||| |||||||||  || ||| | ||| |||||||| |||||||||| |||||  ||||||||| |||| | || |||| ||||||    
T  23095149 gagagtttatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatat--taatcataagtattattttatcattctctaa 23095052  T
Q  375 aaaa 378  Q
    ||||    
T  23095051 aaaa 23095048  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 353
Target Start/End: Complemental strand, 38216543 - 38216462
Alignment:
Q  270 ttttagagagtttagataaattattcaaattctttcaatgattttacaatattctcaaaattaaaaatatatattaatcataaa 353  Q
    |||| ||| |||||||||| || |||||||||  || ||| ||||| |||| ||| ||||||||||||  ||||||||||||||    
T  38216543 ttttggagggtttagataatttcttcaaattcaatctatgtttttataatactctaaaaattaaaaat--atattaatcataaa 38216462  T

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