View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18799_low_6 (Length: 387)
Name: NF18799_low_6
Description: NF18799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18799_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 45358800 - 45358433
Alignment:
| Q |
1 |
accaaattgaaagttgacaggtttatttgccacagactttctgtgtaaaattgatatgctgtctaatcatcacctctattttgtttttcttaaacttttt |
100 |
Q |
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| T |
45358800 |
accaaattgaaagttgacaggtttatttgccacagactttctgtgtaaaattgatatgctgtctaatcatcacctctattttgtttttcttaaacttttt |
45358701 |
T |
|
| Q |
101 |
ataagattgatatgctctcgttagttgactctctcaaactttctttctgaaggaaaataactgtaacttttgggattttatgactttcaaattcataagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45358700 |
ataagattgatatgctctcgttagttgactctctcaaactttctttctgaaggaaaataactgtaacttttgggattttatgactttcaaattcataagt |
45358601 |
T |
|
| Q |
201 |
cctgtaatgaatcaaggtgtgctaaagcaattagactctgacgatcttctgccactactacctgatatgggtccttctttctgtcatgatataattttga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45358600 |
cctgtaatgaatcaaggtgtgctaaagcaattagactctgacgatcttctgccactactacctgatatgggtccttctttctgtcatgatataattttga |
45358501 |
T |
|
| Q |
301 |
atagctggagagctcaagtgagtaataatagtttaaatccatccttgtttagtgcactttgtaatgcg |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45358500 |
atagctggagagctcaagtgagtaataatagtttaaatccatccttgtttagtgcactttgtaatgcg |
45358433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 178 - 367
Target Start/End: Complemental strand, 54629350 - 54629161
Alignment:
| Q |
178 |
ttatgactttcaaattcataagtcctgtaatgaatcaaggtgtgctaaagcaattagactctgacgatcttctgccactactacctgatatgggtccttc |
277 |
Q |
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||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
54629350 |
ttatgactttcaaattcataagtccagtaatgaatcgaagtgtgctaaagcaattagactttgtcgatcttctgccactactacctgatatgggtccttc |
54629251 |
T |
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| Q |
278 |
tttctgtcatgatataattttgaatagctggagagctcaagtgagtaataatagtttaaatccatccttgtttagtgcactttgtaatgc |
367 |
Q |
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|||||| |||||||| ||||||| ||||||| ||||||||||||||||||| || |||||| ||||||||||| |||||||||||||| |
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| T |
54629250 |
tttctgccatgatatcattttgattagctggcgagctcaagtgagtaataacgattcaaatccttccttgtttagagcactttgtaatgc |
54629161 |
T |
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