View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18799_low_8 (Length: 357)
Name: NF18799_low_8
Description: NF18799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18799_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 15 - 342
Target Start/End: Complemental strand, 42219773 - 42219446
Alignment:
| Q |
15 |
ctgtgggaaaatattaaaggatgaaacatagctaaactcaattagcctttagttagttgctaaccaactatagcttacaggctgaataagtttcaggcaa |
114 |
Q |
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| T |
42219773 |
ctgtgggaaaatattaaaggatgaaacatagctaaactcaattagcctttagttagttgctaaccaactatagcttacaggctgaataagtttcaggcaa |
42219674 |
T |
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| Q |
115 |
ccaaaataaactgcattaagcaccaatctcccaaatacatcacataagtcatagaggtactcttgttccaactaattacagaactgcagttgtataacag |
214 |
Q |
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| T |
42219673 |
ccaaaataaactgcattaagcaccaatctcccaaatacatcacataagtcatagaggtactcttgttccaactaattacagaactgcagttgtataacag |
42219574 |
T |
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| Q |
215 |
catcatgaatttgccggcgcttgagataattggcagaaagtgttattgcatnnnnnnnncacatcagtaaagtcattataacaaagcaatcacctttaaa |
314 |
Q |
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| T |
42219573 |
catcatgaatttgccggcgcttgagataattggcagaaagtgttattgcataaaaaaaacacatcagtacagtcattataacaaagcaatcacctttaaa |
42219474 |
T |
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| Q |
315 |
tcccgaccaagttattaatggttaattt |
342 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
42219473 |
tcccgaccaagttattaatggttaattt |
42219446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 39652795 - 39652852
Alignment:
| Q |
204 |
ttgtataacagcatcatgaatttgccggcgcttgagataattggcagaaagtgttatt |
261 |
Q |
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| T |
39652795 |
ttgtataacagcatcatgagtttgccgacggtttggataattggcagaaagtgttatt |
39652852 |
T |
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