View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1879_high_10 (Length: 338)
Name: NF1879_high_10
Description: NF1879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1879_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 2367007 - 2366684
Alignment:
| Q |
1 |
gtagtgactgatcaggagagaaatttcatattaatctgagaggcttatttttctaagataaatttctttattggattctgagaaagagcttaataggagt |
100 |
Q |
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| T |
2367007 |
gtagtgactgatcaggagagaaatttcatggtaatctgagaggcttatttttctaagataaatttctttattggattatgagaaagagcttaataggagt |
2366908 |
T |
|
| Q |
101 |
gaaaaatcacaatatctgattacaaagctatagaccttaccctctaggaaagagatgtgcaacataagaactttacattacaatgtaacttcttaataac |
200 |
Q |
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| T |
2366907 |
gaataatcacaatatctgattacaaagctatagaccttaccctctaggaaagagatgtgcaacataagaactttacattacaatgtaacttcttaataac |
2366808 |
T |
|
| Q |
201 |
acttacaaatttataagttttttctttcgtaagtgacaaatttcaa-nnnnnnnctataaggaaaaaatagagaaattattaatatctggtcacaagaga |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2366807 |
acttacaaatttataagttttttctttcgtaagtgacaaatttaaattttttttctataaggaaaaaatagataaattattaatatctggtcacaagaga |
2366708 |
T |
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| Q |
300 |
gaaaacattggtaagcattttaag |
323 |
Q |
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|||||||||||||||||||||||| |
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| T |
2366707 |
gaaaacattggtaagcattttaag |
2366684 |
T |
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