View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1879_high_15 (Length: 254)
Name: NF1879_high_15
Description: NF1879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1879_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 41260603 - 41260385
Alignment:
| Q |
1 |
tagtcaactaaaaaacattgtaatgactaaggaaatatattagactaacatcaactaaaccgaattaatatataaatagattagtgaacaatttgacaag |
100 |
Q |
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| T |
41260603 |
tagtcaactagaaaacattgtaatgactaaggaaatatattagactaacatcatctaaactgaattaatatataaatagattagtgaacaatttgacaag |
41260504 |
T |
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| Q |
101 |
accaattatacaataccagttgtggggatgagaaatgaaattccataaatagtcttgaaaattttcttgacatcatcaagtaaagtttttgtcaatgttg |
200 |
Q |
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| T |
41260503 |
accaattatacaataccagttgtggggatgagaaatgaaattccataaacagtcttgaaaattttcttgacatcatcaagtaaagtttttgtcaatgttg |
41260404 |
T |
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| Q |
201 |
ttattgctggagtacgatg |
219 |
Q |
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| T |
41260403 |
ttattgctagagtacgatg |
41260385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 39189563 - 39189790
Alignment:
| Q |
1 |
tagtcaactaaaaaacattgtaatgactaaggaaatatattagactaacatcaactaaacc--------gaattaatatataaatagattagtgaacaat |
92 |
Q |
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| T |
39189563 |
tagtcaactagaaaacattctaatgactaaggaaatatattagactaacatcaactaaactattacaatgaagtaatatataaacaacttaatgaacaat |
39189662 |
T |
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| Q |
93 |
ttgacaagaccaattatacaataccagttgtggggatgagaaatgaaattccataaatagtcttgaaaattttcttgacatcatcaagtaaagtttttgt |
192 |
Q |
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| T |
39189663 |
ttgacaagtccaattatacaataccagttgtggggatgagaaatggaattccagaagtagtcttgaaaattttcttgacatcatcaagtaaagtttttgt |
39189762 |
T |
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| Q |
193 |
caatgttgttattgctggagtacgatgg |
220 |
Q |
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| T |
39189763 |
caatgttgttattgccggagtacgatgg |
39189790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 4 - 244
Target Start/End: Original strand, 28460554 - 28460793
Alignment:
| Q |
4 |
tcaactaaaaaacattgtaatgactaaggaaatatattagactaacatcaactaaacc--------gaattaatatataaatagattagtgaacaatttg |
95 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | |||||||||| |
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| T |
28460554 |
tcaactagaaaacattctaatgactaaggaaatatattagactaatatcaactaaactataacaatgaattaatatataaacaa-----tgaacaattta |
28460648 |
T |
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| Q |
96 |
acaagaccaattatacaataccagttgtggggatgagaaatgaaattccataaatagtcttgaaaattttcttgacatcatcaagtaaagtttttgtcaa |
195 |
Q |
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| T |
28460649 |
acaagtccaattatacattaccggttgtggggatgagaaatgggattctagaagtagtcttgaaaattttcttcacatcatcaagtaaagtttttgtcaa |
28460748 |
T |
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| Q |
196 |
tgttgttattgctggagtacgatggatgattatcattgtttctgttcat |
244 |
Q |
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| T |
28460749 |
tgctgttattgctggagtac----gatgattctcattgtttctgttcat |
28460793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 16790149 - 16790065
Alignment:
| Q |
110 |
acaataccagttgtggggatgagaaatgaaattccataaatagtcttgaaaattttcttgacatcatcaagtaaagtttttgtca |
194 |
Q |
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||||||||||| || ||||| ||||||| | ||||| | ||||||||||||| ||||||||||| ||||||| ||||||||||| |
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| T |
16790149 |
acaataccagtagtagggataagaaatggagttccagtagtagtcttgaaaatcttcttgacatcttcaagtagagtttttgtca |
16790065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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