View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1879_high_19 (Length: 238)
Name: NF1879_high_19
Description: NF1879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1879_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 25701675 - 25701450
Alignment:
| Q |
1 |
tagtgttctaaaatgtccataattttattaactttttgtgtgcacatatattttttgtgacttaatatttcatcaacacttatataaatatatatgtttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25701675 |
tagtgttctaaaatgtccataattttattaactttttgtgtgcacatatattttttgtgacttaatatttcatcaacacttatataaatatatatgtttc |
25701576 |
T |
|
| Q |
101 |
gtttatatctagaactcaaaaacttttgttttattgggataatttcctcggtctctacatgtctcaagcttgcctcgagtcaaagctcatgttagatttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25701575 |
gtttatatctagaactcaaaaacttttgttttattgggataatttcctcggtctctacatgtctcaagcttgcctcgagtcaaagctcatgttagatttg |
25701476 |
T |
|
| Q |
201 |
aagctttgaaaaggacagtagtgatg |
226 |
Q |
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||||||||||||||||||| |||||| |
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| T |
25701475 |
aagctttgaaaaggacagtggtgatg |
25701450 |
T |
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