View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1879_high_22 (Length: 218)
Name: NF1879_high_22
Description: NF1879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1879_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 3299751 - 3299941
Alignment:
| Q |
12 |
cacagaagtcaaagcataaacacagaaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagact |
111 |
Q |
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| T |
3299751 |
cacagaagtcaaagcataaacacggaaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacggtgcagact |
3299850 |
T |
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| Q |
112 |
tgacacttaatccgaaaaacaagttaacaagacgaaaaataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttc |
202 |
Q |
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| T |
3299851 |
tgacacttaatccgaaaaacaagttaacaagacgaaaaataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttc |
3299941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 43082869 - 43083008
Alignment:
| Q |
22 |
aaagcataaacacagaaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaa |
121 |
Q |
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| T |
43082869 |
aaagcataaaaacaaaacagatagagcgctgccaccgtcgatctagaacccagttctgagaacaaaagctaagagatgaaggtgcagacttgacacttaa |
43082968 |
T |
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| Q |
122 |
tccgaaaaacaagttaacaagacgaaaaataaaagtacta |
161 |
Q |
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| T |
43082969 |
tatgaaaaacaagtaaactagacgagaaatagaaatacta |
43083008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 43044025 - 43044164
Alignment:
| Q |
22 |
aaagcataaacacagaaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaa |
121 |
Q |
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| T |
43044025 |
aaagcataaaaacaaaacagatatagtactgccaccgtcgatctagaacccagttctgagaacacaagctaagagatgaaggtgcagacttgacacttaa |
43044124 |
T |
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| Q |
122 |
tccgaaaaacaagttaacaagacgaaaaataaaagtacta |
161 |
Q |
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| T |
43044125 |
tatgaaaaacaagtaaactagaagagaaatagaaatacta |
43044164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 161
Target Start/End: Complemental strand, 43067938 - 43067827
Alignment:
| Q |
50 |
ctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagttaacaagacgaaaa |
149 |
Q |
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| T |
43067938 |
ctgccaccgtcgatctagaacccagttctgagaacaaaagctaagagatgaaggtgcagacttgacacttaatatgaaaaacaagtaaactagactagaa |
43067839 |
T |
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| Q |
150 |
ataaaagtacta |
161 |
Q |
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| T |
43067838 |
atagaaatacta |
43067827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 37 - 139
Target Start/End: Complemental strand, 43079958 - 43079856
Alignment:
| Q |
37 |
aaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagtt |
136 |
Q |
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| T |
43079958 |
aaaagaaaaagccttgccacagtcgatatagaacccaatcctgggaacaagggctgcgagacgacggtgcagacttgacacttaatctgaaaaacaagtt |
43079859 |
T |
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| Q |
137 |
aac |
139 |
Q |
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||| |
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| T |
43079858 |
aac |
43079856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 38139079 - 38139007
Alignment:
| Q |
49 |
cctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaa |
121 |
Q |
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| T |
38139079 |
cctgccaccatcaatctagaagccagttcttggaacaaaagctgtgagatgacggtgcagacttgacacttaa |
38139007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 4230525 - 4230618
Alignment:
| Q |
51 |
tgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagttaacaagac |
144 |
Q |
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| T |
4230525 |
tgccaccgtcgatctagaacccagttctgggaacaaaagctgggagatgacggtgcagacttcacacttaatccaaaaaacaacttaacaagac |
4230618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 19965709 - 19965623
Alignment:
| Q |
24 |
agcataaacacagaaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagac |
110 |
Q |
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| T |
19965709 |
agcataaaaaccaaaaagaaatggccctgccactgtcgatctagaagccagttctgggaacgaaagctgcaagacaacagtgcagac |
19965623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 136
Target Start/End: Original strand, 4618729 - 4618826
Alignment:
| Q |
37 |
aaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagtt |
136 |
Q |
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|||||||||||||||||||| ||| ||| |||||| |||| | ||||||||| | || ||||||||||||||||||||||||| | | |||||||||| |
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| T |
4618729 |
aaaagaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaact--gatatgacagtgcagacttgacacttaacctgcaaaacaagtt |
4618826 |
T |
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