View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1879_low_1 (Length: 529)

Name: NF1879_low_1
Description: NF1879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1879_low_1
NF1879_low_1
[»] chr5 (3 HSPs)
chr5 (281-518)||(30739643-30739880)
chr5 (20-213)||(30739388-30739579)
chr5 (400-468)||(32018636-32018705)
[»] chr7 (4 HSPs)
chr7 (288-397)||(2198179-2198295)
chr7 (400-476)||(28173794-28173870)
chr7 (288-396)||(48433876-48433992)
chr7 (400-468)||(27854259-27854328)
[»] chr3 (6 HSPs)
chr3 (400-476)||(17620296-17620372)
chr3 (398-497)||(30793042-30793140)
chr3 (398-497)||(30802898-30802996)
chr3 (171-202)||(11217964-11217995)
chr3 (412-518)||(9509958-9510064)
chr3 (412-518)||(9517933-9518039)
[»] chr8 (2 HSPs)
chr8 (288-397)||(42773126-42773244)
chr8 (411-476)||(33694856-33694921)
[»] chr4 (3 HSPs)
chr4 (411-476)||(28713147-28713212)
chr4 (171-200)||(14269598-14269627)
chr4 (171-200)||(21800811-21800840)
[»] chr2 (2 HSPs)
chr2 (170-200)||(36657890-36657920)
chr2 (171-200)||(29463346-29463375)
[»] chr1 (1 HSPs)
chr1 (398-439)||(26805244-26805286)
[»] chr6 (1 HSPs)
chr6 (400-440)||(32332839-32332879)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 281 - 518
Target Start/End: Original strand, 30739643 - 30739880
Alignment:
Q  281 cttacatcgcaatgacaaatatgtattatgtaattttatgtttattaacgataaatatatgtcttatgcatctgcgaaaaatatatttccattattttct 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30739643 cttacatcgcaatgacaaatatgtattatgtaattttatgtttattaacgataaatatatgtcttatgcatctgtgaaaaatatatttccattattttct 30739742  T
Q  381 atatttgtcaacaaaaattggttgggaggagggggtgaggcgtggaggtggaggaggaggctatgggcatggaagaaagagttggtagcagagtgtgtga 480  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30739743 atatttgtcaacaaaaattggttgggaggagggggtgaagcgtggaggtggaggaggaggctgtgggcatggaagaaagagttggtagcagagtgtgtga 30739842  T
Q  481 ctttacttcacaatgttactttgcagtctaatgtttca 518  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30739843 ctttacttcacaatgttactttgcagtctaatgtttca 30739880  T

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Target: chr5; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 30739388 - 30739579
Alignment:
Q  20 aagcatttatacacactcataaaatgtaactaactatttcatgcatctcaatccatgttatgccatgccagttgcttaagtgcatagaactatttcaaga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  30739388 aagcatttatacacactcataaaatgtaactaactatttcatgcatctcaatccatgttgtgccatgccagttgct-aagtgcatagaactatttcaaga 30739486  T
Q  120 gttgaggattttatttcggttcagtggatattgactccttgaattcgataaactagtgtgttaacccgtgcaatgcacgggcgacaagcttcaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30739487 gttgaggattttatttcggttcagtggatattgactccttgaattcgataaactagtgtgttaacccgtgcaatgcac-ggcgacaagcttcaa 30739579  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 468
Target Start/End: Complemental strand, 32018705 - 32018636
Alignment:
Q  400 ggttgggaggagg-gggtgaggcgtggaggtggaggaggaggctatgggcatggaagaaagagttggtag 468  Q
    ||||||||||||| |||||||||||||||||||||||| ||| | ||||| ||| || ||||||||||||    
T  32018705 ggttgggaggaggagggtgaggcgtggaggtggaggagaaggttgtgggcgtgggaggaagagttggtag 32018636  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 397
Target Start/End: Complemental strand, 2198295 - 2198179
Alignment:
Q  288 cgcaatgacaaatatgtattatgtaattttatgtttattaacgataaatatatgtct--------tatgcatctgcgaaaaatatatttccattattttc 379  Q
    |||||||||||||||||||  | || ||||||||||||||  | || ||||||||||        |||||||||| |||||||||||||||||||||||     
T  2198295 cgcaatgacaaatatgtatcctatatttttatgtttattagtgctagatatatgtctcatgtttttatgcatctgtgaaaaatatatttccattatttt- 2198197  T
Q  380 tatatttgtcaacaaaaa 397  Q
    ||||||||||||||||||    
T  2198196 tatatttgtcaacaaaaa 2198179  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 400 - 476
Target Start/End: Original strand, 28173794 - 28173870
Alignment:
Q  400 ggttgggaggagggggtgaggcgtggaggtggaggaggaggctatgggcatggaagaaagagttggtagcagagtgt 476  Q
    ||||||||||||||||||||||||||| ||||||||||||  | ||||| ||| || | ||||||||||| ||||||    
T  28173794 ggttgggaggagggggtgaggcgtggaagtggaggaggagattgtgggcgtgggaggaggagttggtagcggagtgt 28173870  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 396
Target Start/End: Original strand, 48433876 - 48433992
Alignment:
Q  288 cgcaatgacaaatatgtattatgtaattttatgtttattaacgataaatatatgtc--------ttatgcatctgcgaaaaatatatttccattattttc 379  Q
    |||||||||||||||||||  | || ||||||||||||||  ||||||  ||||||        ||||||||| | |||||||||| ||||||||||||     
T  48433876 cgcaatgacaaatatgtatcctatatttttatgtttattagtgataaacttatgtcccgtgtttttatgcatcagtgaaaaatataattccattattttt 48433975  T
Q  380 tatatttgtcaacaaaa 396  Q
    |||||||||||||||||    
T  48433976 tatatttgtcaacaaaa 48433992  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 400 - 468
Target Start/End: Original strand, 27854259 - 27854328
Alignment:
Q  400 ggttgggaggagg-gggtgaggcgtggaggtggaggaggaggctatgggcatggaagaaagagttggtag 468  Q
    ||||||||||||| ||||||||| |||||||||||||| ||| | ||||| ||| || ||||||||||||    
T  27854259 ggttgggaggaggagggtgaggcttggaggtggaggagaaggttgtgggcttgggaggaagagttggtag 27854328  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 400 - 476
Target Start/End: Complemental strand, 17620372 - 17620296
Alignment:
Q  400 ggttgggaggagggggtgaggcgtggaggtggaggaggaggctatgggcatggaagaaagagttggtagcagagtgt 476  Q
    |||||||| ||||||| |||||||||| ||||||||||||| | ||||| ||| |||| ||||||||||||||||||    
T  17620372 ggttgggacgagggggagaggcgtggaagtggaggaggaggttgtgggcgtgggagaaggagttggtagcagagtgt 17620296  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 497
Target Start/End: Original strand, 30793042 - 30793140
Alignment:
Q  398 ttggttgggaggagggggtgaggcgtggaggtggaggaggaggctatgggcatggaagaaagagttggtagcagagtgtgtgactttacttcacaatgtt 497  Q
    ||||||||||||||||||||| || ||||||||||| ||||| |||||||| ||| || | || || ||||| ||||||  | |||||||||||| ||||    
T  30793042 ttggttgggaggagggggtgaagcatggaggtggagaaggagactatgggc-tgggaggaggatttagtagcggagtgtagggctttacttcacactgtt 30793140  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 497
Target Start/End: Original strand, 30802898 - 30802996
Alignment:
Q  398 ttggttgggaggagggggtgaggcgtggaggtggaggaggaggctatgggcatggaagaaagagttggtagcagagtgtgtgactttacttcacaatgtt 497  Q
    ||||||||||||||||||||| || ||||||||||| ||||| || |||||| ||||| | || || ||||| ||||||  | |||||||||||| ||||    
T  30802898 ttggttgggaggagggggtgaagcatggaggtggagaaggagactgtgggca-ggaaggaggatttagtagcggagtgtagggctttacttcacactgtt 30802996  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 202
Target Start/End: Complemental strand, 11217995 - 11217964
Alignment:
Q  171 actagtgtgttaacccgtgcaatgcacgggcg 202  Q
    ||||||||||||||||||||||||||||||||    
T  11217995 actagtgtgttaacccgtgcaatgcacgggcg 11217964  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 518
Target Start/End: Complemental strand, 9510064 - 9509958
Alignment:
Q  412 ggggtgaggcgtggaggtggaggaggaggctatgggcatggaagaaagagttggtagcagagtgtgtgactttacttcacaatgttactttgcagtctaa 511  Q
    |||||||||| |||  | ||||||||||| | ||||||||| || | ||||||||||| ||||||  ||  ||||||   ||||||||||||| |||||     
T  9510064 ggggtgaggcatggtaggggaggaggaggttgtgggcatgggaggaggagttggtagcggagtgtaggatcttacttgctaatgttactttgctgtctag 9509965  T
Q  512 tgtttca 518  Q
    |||||||    
T  9509964 tgtttca 9509958  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 518
Target Start/End: Complemental strand, 9518039 - 9517933
Alignment:
Q  412 ggggtgaggcgtggaggtggaggaggaggctatgggcatggaagaaagagttggtagcagagtgtgtgactttacttcacaatgttactttgcagtctaa 511  Q
    |||||||||| |||  | ||||||||||| | ||||||||| || | ||||||||||| ||||||  ||  ||||||   ||||||||||||| |||||     
T  9518039 ggggtgaggcatggtaggggaggaggaggttgtgggcatgggaggaggagttggtagcggagtgtaggatcttacttgctaatgttactttgctgtctag 9517940  T
Q  512 tgtttca 518  Q
    |||||||    
T  9517939 tgtttca 9517933  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 397
Target Start/End: Complemental strand, 42773244 - 42773126
Alignment:
Q  288 cgcaatgacaaatatgtattatgtaattttatgtttattaacgataaatatatgtc--------ttatgcatctgcgaaaaatatatttccattattttc 379  Q
    |||||||||||| ||||||| | || ||||||||||||||  ||||||||||||||        |||||||||||||| |||||| ||||||| |||||     
T  42773244 cgcaatgacaaacatgtattctatatttttatgtttattagtgataaatatatgtctcatgtttttatgcatctgcgagaaatatgtttccatcattttt 42773145  T
Q  380 tata-tttgtcaacaaaaa 397  Q
    |||| |||||||| |||||    
T  42773144 tatactttgtcaataaaaa 42773126  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 411 - 476
Target Start/End: Complemental strand, 33694921 - 33694856
Alignment:
Q  411 gggggtgaggcgtggaggtggaggaggaggctatgggcatggaagaaagagttggtagcagagtgt 476  Q
    ||||| |||||||||| ||||||||||||||| | ||| ||| || | ||||||||||||||||||    
T  33694921 gggggagaggcgtggaagtggaggaggaggctgtaggcgtgggaggaggagttggtagcagagtgt 33694856  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 476
Target Start/End: Original strand, 28713147 - 28713212
Alignment:
Q  411 gggggtgaggcgtggaggtggaggaggaggctatgggcatggaagaaagagttggtagcagagtgt 476  Q
    ||||| |||||||||| ||||||||||||||| ||||| ||| || | ||||||||||||||||||    
T  28713147 gggggagaggcgtggaagtggaggaggaggctgtgggcgtgggaggaggagttggtagcagagtgt 28713212  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 200
Target Start/End: Complemental strand, 14269627 - 14269598
Alignment:
Q  171 actagtgtgttaacccgtgcaatgcacggg 200  Q
    ||||||||||||||||||||||||||||||    
T  14269627 actagtgtgttaacccgtgcaatgcacggg 14269598  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 200
Target Start/End: Original strand, 21800811 - 21800840
Alignment:
Q  171 actagtgtgttaacccgtgcaatgcacggg 200  Q
    ||||||||||||||||||||||||||||||    
T  21800811 actagtgtgttaacccgtgcaatgcacggg 21800840  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 200
Target Start/End: Original strand, 36657890 - 36657920
Alignment:
Q  170 aactagtgtgttaacccgtgcaatgcacggg 200  Q
    |||||||||||||||||||||||||||||||    
T  36657890 aactagtgtgttaacccgtgcaatgcacggg 36657920  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 200
Target Start/End: Original strand, 29463346 - 29463375
Alignment:
Q  171 actagtgtgttaacccgtgcaatgcacggg 200  Q
    ||||||||||||||||||||||||||||||    
T  29463346 actagtgtgttaacccgtgcaatgcacggg 29463375  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 439
Target Start/End: Complemental strand, 26805286 - 26805244
Alignment:
Q  398 ttggttgggagg-agggggtgaggcgtggaggtggaggaggag 439  Q
    |||||||||||| ||| ||||||||||||||||||||||||||    
T  26805286 ttggttgggaggtaggtggtgaggcgtggaggtggaggaggag 26805244  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 440
Target Start/End: Complemental strand, 32332879 - 32332839
Alignment:
Q  400 ggttgggaggagggggtgaggcgtggaggtggaggaggagg 440  Q
    ||||||||||||||||||||||||||  ||||| |||||||    
T  32332879 ggttgggaggagggggtgaggcgtggcagtggacgaggagg 32332839  T

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