View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1879_low_10 (Length: 339)
Name: NF1879_low_10
Description: NF1879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1879_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 6281869 - 6281552
Alignment:
| Q |
19 |
tcatgttcttggatagtggtgttgaaagaacagagaaagaatttgaaaagttatgcaaatgttctggattttctagttttgaggttgtttgtcttgcctt |
118 |
Q |
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| T |
6281869 |
tcatgttcttggatagtggtgttgaaagaacagagaaagaatttgaaaagttatgcaaatgttctggattttctagttttgaggttgtttgtcttgcctt |
6281770 |
T |
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| Q |
119 |
ttctgccctaggagtgatggaattttctaaataaataagcaagtattatgtaaggaatataatagatagtatttataccataaatttggcttgtctaaaa |
218 |
Q |
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| T |
6281769 |
ttctgccctaggagtgatggaattttctaaataaataagcaagtattatgtaaggaatataatagatagtatttataccataaatttggcttgtctaaaa |
6281670 |
T |
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| Q |
219 |
gtgatcatagaataaagttataaaataaagggttcatatttcaatacatgtttataatttgttttgtaatgtatatatgatatctattattgaatattaa |
318 |
Q |
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| T |
6281669 |
gtgatcatagaataaagttataaaataaagggttcatatttcaatacatgtttataatttgttatgtaatgtatatatgatatctattattgaatattga |
6281570 |
T |
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| Q |
319 |
tttgttatgaataaataa |
336 |
Q |
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| T |
6281569 |
tttgttatgaataaataa |
6281552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 143
Target Start/End: Complemental strand, 6277492 - 6277390
Alignment:
| Q |
41 |
tgaaagaacagagaaagaatttgaaaagttatgcaaatgttctggattttctagttttgaggttgtttgtcttgccttttctgccctaggagtgatggaa |
140 |
Q |
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| T |
6277492 |
tgaaagaacaaagaaagaatttgagagtttgtgcaaaagctctggattttctagttttgaaattgtttgcttggctttttcttctttgggagtgatggaa |
6277393 |
T |
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| Q |
141 |
ttt |
143 |
Q |
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||| |
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| T |
6277392 |
ttt |
6277390 |
T |
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