View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1879_low_12 (Length: 334)
Name: NF1879_low_12
Description: NF1879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1879_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 35901021 - 35900799
Alignment:
| Q |
17 |
caatattaatatggccccaatcttttgcctgtcaccttcgggagcgtaagaacagtcaagaacacaaata-----ttcaccacattcaaacctcaataac |
111 |
Q |
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| T |
35901021 |
caatattaatatggctccaatcttttgcctgtcaccttcgggagcgtaagaacagtcaagaacacaaatacagtattcaccacattcaaacctcaataac |
35900922 |
T |
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| Q |
112 |
agatctttgaattgaaatactgaattattcagacaaagaggatcagacgcacnnnnnnntaagaacaaaatgttcatactttttcactgatcccaacaat |
211 |
Q |
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| T |
35900921 |
agatctttgaattgaaatactgaattattcagtcaaagaggatcagacgcacaaaaaaataagaacaaaatgttcatactttttcactgatcccaacaat |
35900822 |
T |
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| Q |
212 |
ttgggatataaaccaagcaaaaa |
234 |
Q |
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| T |
35900821 |
ttgggatataaaccaagcaaaaa |
35900799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 48 - 202
Target Start/End: Complemental strand, 35884770 - 35884617
Alignment:
| Q |
48 |
tcaccttcgggagcgtaagaacagtcaagaacacaaatattcaccacattcaaacctcaataacagatctttgaattgaaatactgaattattcagacaa |
147 |
Q |
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| T |
35884770 |
tcaccttcaggagcgtaagaacagtcaagaacacaaatatttaccacgttcaaacctcaataacaaatctttgaattgaaatacttaattattcagtcag |
35884671 |
T |
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| Q |
148 |
agaggatcagacgcacnnnnnnntaagaacaaaatgttcatactttttcactgat |
202 |
Q |
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| T |
35884670 |
agaggatcagacgcac-agaaaataagaacaaaacattcatactttttcactgat |
35884617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 35900734 - 35900696
Alignment:
| Q |
286 |
attttgctacttgtactgcattatttaccaccacctatg |
324 |
Q |
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| T |
35900734 |
attttgccacttgtactgcattatttaccaccacttatg |
35900696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 10209712 - 10209763
Alignment:
| Q |
112 |
agatctttgaattgaaatactgaattattcagacaaagaggatcagacgcac |
163 |
Q |
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| T |
10209712 |
agatctttgaattgaaatactgaattattcagtcagagaggatcagatgcac |
10209763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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