View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1879_low_13 (Length: 307)

Name: NF1879_low_13
Description: NF1879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1879_low_13
NF1879_low_13
[»] chr6 (1 HSPs)
chr6 (11-307)||(2240014-2240300)


Alignment Details
Target: chr6 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 2240014 - 2240300
Alignment:
Q  11 cacagaaaaagtttgaattataagtagcnnnnnnnnntgattgtttattatggatgagtgcattttttagaaaaataaatccattctattggtctttgag 110  Q
    ||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2240014 cacagaaaaagtttgaattataagtagcaaaaaaaa-tgattgtttattatggatgagtgcattttttagaaaaataaatcccttctattggtctttgag 2240112  T
Q  111 atctaactcaaagaacaaaactgaacttgttaagctaaatannnnnnngataagctatctatatacataaataaaataaaaaatccattccatcaagatg 210  Q
    ||||||||||||       ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2240113 atctaactcaaa-------actgaacttgttaagctaaatatttttgtgataagctatctatatacataaataaaataaaaaatccattccatcaagatg 2240205  T
Q  211 acttgtgtctatctactctctgagtatggacgtagatcatttacnnnnnnnnnnnttcaaattgtttcttttttattttatatataataatcttgtt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||| ||||||||||||||||||| ||||||    
T  2240206 acttgtgtctatctactctctgagtatggacgtagatcatttac--aaaaaaaaattcaaattgtttcttatttattttatatataataaacttgtt 2240300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University