View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1879_low_14 (Length: 271)
Name: NF1879_low_14
Description: NF1879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1879_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 29333880 - 29333634
Alignment:
| Q |
15 |
aaagctgacgtggaacgccgccataacagaatgaaactgaaattcacttttccctccaaaaaccgccaccgaacctccacttccgcctccgtcacatctc |
114 |
Q |
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| T |
29333880 |
aaagctgacgtggaacgccgccataacagaatgaaactgaaattcacttttccctccaaaaaccgccaccgaacctccacttccgcctccgtcacctctc |
29333781 |
T |
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| Q |
115 |
cgccaccgccgcc---acctccaccactagaatcttcacttcgcaaccctttcgaaccggatataaacccgccaccgcgcaactacttggaagaaatagt |
211 |
Q |
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| T |
29333780 |
caccaccgccgccgccacctccaccgctagaatcttcccttcgcaaccctttcgaaccggatataaacccgccaccgcgcaactacttggaagaaatagt |
29333681 |
T |
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| Q |
212 |
caacaaacgaagacgcatcgaagaaaaccaagacgaatcactcctcc |
258 |
Q |
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| T |
29333680 |
caacaaacgaagacgcatcgaagaaaaccaagacgaatcactcctcc |
29333634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 254
Target Start/End: Complemental strand, 29322533 - 29322447
Alignment:
| Q |
168 |
ccggatataaacccgccaccgcgcaactacttggaagaaatagtcaacaaacgaagacgcatcgaagaaaaccaagacgaatcactc |
254 |
Q |
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| T |
29322533 |
ccggatataaacccaccactgcgcaatcacttggaagaaataatgaacaagagaaggcgcatcgaacacaaccaagataaatcactc |
29322447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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