View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1879_low_15 (Length: 265)
Name: NF1879_low_15
Description: NF1879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1879_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 28 - 252
Target Start/End: Original strand, 14435940 - 14436162
Alignment:
| Q |
28 |
tgattacttaacaagatatttttacattgaatcacaaggtctccaaaattatttaggggagtagtagtagagtagagtgtattcaccaaggatctactgt |
127 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||| | ||| |||||||||||||||||||| |||| ||||||||||||||||| || |
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| T |
14435940 |
tgattacttaacaagatatttttacattgaaccacaaggtctccaaattcattgaggggagtagtagtagagtaaagtgcattcaccaaggatctaccgt |
14436039 |
T |
|
| Q |
128 |
cagtttcaaatataacattatgcatgccattggagttattgccatcttcatagcttctagctgcccaatggtttccacttcaagaacagtagcagaaaat |
227 |
Q |
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|||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
14436040 |
cagtttcaaatataacattatgcacaccattggag--attgtcatcttcatagcttctagcaacccaatggtttccacttcaagaacagtagcagaaatt |
14436137 |
T |
|
| Q |
228 |
tgcatgtaatctaatttttcaagta |
252 |
Q |
| |
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|||| ||||| | ||||| |||||| |
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|
| T |
14436138 |
tgcaagtaatatgattttccaagta |
14436162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 40 - 157
Target Start/End: Complemental strand, 30928208 - 30928091
Alignment:
| Q |
40 |
aagatatttttacattgaatcacaaggtctccaaaattatttaggggagtagtagtagagtagagtgtattcaccaaggatctactgtcagtttcaaata |
139 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
30928208 |
aagatatttttacattgaatcacaagatctccaaattcattgaggggagtagtagtagactagagtgtattcaccaaggatctactttcagtttcaaata |
30928109 |
T |
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| Q |
140 |
taacattatgcatgccat |
157 |
Q |
| |
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|||||||||||||||||| |
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| T |
30928108 |
taacattatgcatgccat |
30928091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 131 - 252
Target Start/End: Complemental strand, 30928088 - 30927971
Alignment:
| Q |
131 |
tttcaaatataacattatgcatgccattggagttattgccatcttcatagcttctagctgcccaatggtttccacttcaagaacagtagcagaaaattgc |
230 |
Q |
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||||||| | |||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||| |
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| T |
30928088 |
tttcaaaaaaaacattatgcatgccattggag--attgccatcttcatagcttctagcagcccaatagtttccacttcaaga--agtagcagaaaattgc |
30927993 |
T |
|
| Q |
231 |
atgtaatctaatttttcaagta |
252 |
Q |
| |
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||||||| | ||||| |||||| |
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| T |
30927992 |
atgtaatatgattttccaagta |
30927971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 21 - 252
Target Start/End: Complemental strand, 2333640 - 2333409
Alignment:
| Q |
21 |
aaagtcatgattacttaacaagatatttttacattgaatcacaa--ggtctccaaaattatttaggggagtagtagtagagtagagtgtattcaccaagg |
118 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||| |||||||||| | ||| |||||||| |||||||||||||||| |||| ||| || |
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| T |
2333640 |
aaagtcgtgattacttaacaagatgtttttacattgaatcacaaaaggtctccaaattcattgaggggagtggtagtagagtagagtgcattctccatgg |
2333541 |
T |
|
| Q |
119 |
atctactgtcagtttcaaatataacattatgcatgccattggagttattgccatcttcatagcttctagctgcccaatggtttccacttcaagaacagta |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| | ||||| |||| |
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| T |
2333540 |
atctactgtcagtttcaaatataacattatgcatgccattggag--attgccatctccatagcttctagcagcccaatggtttccaccttaagaatagta |
2333443 |
T |
|
| Q |
219 |
gcagaaaattgcatgtaatctaatttttcaagta |
252 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||| |
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| T |
2333442 |
gcagaattttgcatgtaatctgatttttcaagta |
2333409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 252
Target Start/End: Original strand, 34297537 - 34297766
Alignment:
| Q |
21 |
aaagtcatgattacttaacaagatatttttacattgaatcacaaggtctccaaaattatttaggggagtagtagtagagtagagtgtattcaccaaggat |
120 |
Q |
| |
|
|||||| ||||||||| |||| ||||||||||| ||||||||| |||| |||| | ||| ||| |||||||||||| |||||||| |||||| || ||| |
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| T |
34297537 |
aaagtcgtgattacttgacaaaatatttttacaccgaatcacaaagtcttcaaattcattgaggagagtagtagtagtgtagagtgcattcactaaagat |
34297636 |
T |
|
| Q |
121 |
ctactgtcagtttcaaatataacattatgcatgccattggagttattgccatcttcatagcttctagctgcccaatggtttccacttcaagaacagtagc |
220 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| |||||| | | |||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
34297637 |
ctactgtcagtttcaaagataacatcatgcataccattgaa--aactgccatcttcatttcttctagccatccaatggtttccacttcaagaacagtagc |
34297734 |
T |
|
| Q |
221 |
agaaaattgcatgtaatctaatttttcaagta |
252 |
Q |
| |
|
|||| ||||| ||||| | ||||| |||||| |
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| T |
34297735 |
ggaaatttgcaagtaatatgattttccaagta |
34297766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 42 - 244
Target Start/End: Complemental strand, 55641146 - 55640946
Alignment:
| Q |
42 |
gatatttttacattgaatcacaaggtctccaaaattatttaggggagtagtagtagagtagagtgtattcaccaaggatctactgtcagtttcaaatata |
141 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| | ||| | ||||||| |||||| ||| |||| ||| | || |||||| |||| |||||||||||| |
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|
| T |
55641146 |
gatatttttacattgaatcacaaggtttttaaattcattgaagggagtattagtagtgtatagtgcattttctaaagatctattgtccgtttcaaatata |
55641047 |
T |
|
| Q |
142 |
acattatgcatgccattggagttattgccatcttcatagcttctagctgcccaatggtttccacttcaagaacagtagcagaaaattgcatgtaatctaa |
241 |
Q |
| |
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|| | |||||| |||||| | |||||||||||||||||||||||| ||||||||| |||||||||||||| |||| |||| | ||| ||||||| | |
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| T |
55641046 |
acttcatgcataccattgaaa--attgccatcttcatagcttctagcaatccaatggttcccacttcaagaacaatagcggaaattcgcaagtaatctga |
55640949 |
T |
|
| Q |
242 |
ttt |
244 |
Q |
| |
|
||| |
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|
| T |
55640948 |
ttt |
55640946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 220
Target Start/End: Complemental strand, 42661508 - 42661333
Alignment:
| Q |
42 |
gatatttttacattgaatcacaaggtctccaaaattatttaggggagtagtagtagagtagagtgtattcaccaaggatctactgtcagtttcaaatata |
141 |
Q |
| |
|
||||||||||||| |||||||||||| | ||| | ||| | |||||||||||||| ||| |||| ||| || || |||||| |||| ||| |||||||| |
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| T |
42661508 |
gatatttttacatggaatcacaaggtttttaaattcattgaagggagtagtagtagtgtatagtgcatttactaaagatctagtgtccgtt-caaatata |
42661410 |
T |
|
| Q |
142 |
acattatgcatgccattggagttattgccatcttcatagcttctagctgcccaatggtttccacttcaagaacagtagc |
220 |
Q |
| |
|
|| | |||||| |||||| | ||||||||||| |||||||||||| |||||||||||||||||||||||| |||| |
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|
| T |
42661409 |
acttcatgcataccattgaaa--attgccatctttatagcttctagcaatccaatggtttccacttcaagaacaatagc |
42661333 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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