View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1879_low_18 (Length: 239)
Name: NF1879_low_18
Description: NF1879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1879_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 12039063 - 12039271
Alignment:
| Q |
12 |
cagagaggagctaaacttaacttctgcaatgatgtttttgaccatgttggggatattgaattccttgtcttgaaaataccgattgttatgttggatccaa |
111 |
Q |
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| T |
12039063 |
cagagaggagctaaacttaacttctgcaatgatgtttttgaccatgttggggatattgaattccttgtcttgaaaataccgattgttatgttggatccaa |
12039162 |
T |
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| Q |
112 |
atttgccatatgctatgaatgatgacagaaatcagaatctgatgagtgaatttgctccctttgctgatgccggtgtgtaacagatttagacagttggaag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12039163 |
atttgccatatgctatgaatgatgacagaaatcagaatctgatgagtgaatttgctccctttgctgatgccggtgtgtgacagatttagacagttggaag |
12039262 |
T |
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| Q |
212 |
tgtccaggt |
220 |
Q |
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||||||||| |
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| T |
12039263 |
tgtccaggt |
12039271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 12057367 - 12057575
Alignment:
| Q |
12 |
cagagaggagctaaacttaacttctgcaatgatgtttttgaccatgttggggatattgaattccttgtcttgaaaataccgattgttatgttggatccaa |
111 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
12057367 |
cagagaggagctaaacttagcttctgcaatgatgtttctgaccatgttggggatattgagttccttgtcttgaaaataccgattgttatgttcgatccag |
12057466 |
T |
|
| Q |
112 |
atttgccatatgctatgaatgatgacagaaatcagaatctgatgagtgaatttgctccctttgctgatgccggtgtgtaacagatttagacagttggaag |
211 |
Q |
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| T |
12057467 |
atttgccatatgctatgaatgatgacagaaatcagaatctgatgagtgaatttgctccctttgctgatgtcggtgtgtaacagatttagacagttggaag |
12057566 |
T |
|
| Q |
212 |
tgtccaggt |
220 |
Q |
| |
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||||||||| |
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| T |
12057567 |
tgtccaggt |
12057575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 19122269 - 19122065
Alignment:
| Q |
15 |
agaggagctaaacttaacttctgcaatgatgtttttgaccatgttggggatattgaattccttgtcttgaaaataccgattgttatgttggatccaaatt |
114 |
Q |
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||||||||||||||||||||| | |||||| ||| |||| |||| || ||||||| |||||| ||||||||||| ||||||||| ||| |||| | ||| |
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| T |
19122269 |
agaggagctaaacttaacttcggaaatgatttttctgacgatgtgggatatattgagttccttatcttgaaaatatcgattgttacgttcgatcaagatt |
19122170 |
T |
|
| Q |
115 |
tgccatatgctatgaatgatgacagaaatcagaatctgatgagtgaatttgctccctttgctgatgccggtgtgtaacagatttagacagttggaagtgt |
214 |
Q |
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| T |
19122169 |
tgccatatgctatgaatgatgacagaaatcagaatctaatgcgtgaacttgctccc-ttgcagatgatgatgtgtaacagatttagacaagtggaaatgt |
19122071 |
T |
|
| Q |
215 |
ccaggt |
220 |
Q |
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|||||| |
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|
| T |
19122070 |
ccaggt |
19122065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 26228837 - 26228947
Alignment:
| Q |
15 |
agaggagctaaacttaacttctgcaat---gatgtttttgaccatgttggggatattgaattccttgtcttgaaaataccgattgttatgttggatccaa |
111 |
Q |
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||||||||||||||||||| || |||| ||||||| |||||||| | ||||||||| ||||||||||||||||| |||||||||||||| |||||| |
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| T |
26228837 |
agaggagctaaacttaactgctacaataatgatgtttgtgaccatgatagggatattgggttccttgtcttgaaaatgccgattgttatgttcgatccag |
26228936 |
T |
|
| Q |
112 |
atttgccatat |
122 |
Q |
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||||||||||| |
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| T |
26228937 |
atttgccatat |
26228947 |
T |
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