View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1879_low_2 (Length: 514)
Name: NF1879_low_2
Description: NF1879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1879_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 75 - 512
Target Start/End: Original strand, 35900288 - 35900726
Alignment:
| Q |
75 |
tgtcattgtgaaaaatgttttggctccagagtacaaggtcgt-tggtacatgaatttttgttctctgtttttatattattcttaattatgatatacacct |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35900288 |
tgtcattgtgaaaaatgttttggctccagagtacaaggtcgtctggtacatgaatttttgttctctgtttttatattattcttaactatgatatacacct |
35900387 |
T |
|
| Q |
174 |
tttaaaatcaatgtaaaaagcatctagtccaagggagaaagattctggtcatatttggcattaattaactctacttttggctagcagtacaaatctttta |
273 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35900388 |
tttaaaatcaatgtaaaaaacatctagtccaagggagaaagattctggtcatatttggcattaattaactctacttttggctagcagtacaaatctttta |
35900487 |
T |
|
| Q |
274 |
ggctcattatgttaaaatgatgatgttttcggtgtttgatttatcttgaactaaagatggatttcatttctaatttgaagcttatgttagttcactggtt |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35900488 |
ggctcattatgttaaaatgatgatgttttcggtgtttgatttatcttgaactaaagatggatttcatttctaatttgaagcttatgttagttcactggtt |
35900587 |
T |
|
| Q |
374 |
ctattattttatggtattataaaattagtaaagggtcagagtgaaaaccttatctacttgaatatgtaaaatgtaagtgtcaatcattgtacatcttagt |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35900588 |
gtattattttatggtattataaaattagtaaagggtcagagtgaaaaccttatctacttgaatatgtaaaatgtaagtgtcaatcattgtacatcttagt |
35900687 |
T |
|
| Q |
474 |
ggcaaaatcataagtggcggtaaataatgcagtacaagt |
512 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35900688 |
ggcaaaatcataagtggtggtaaataatgcagtacaagt |
35900726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 292 - 469
Target Start/End: Original strand, 35882821 - 35882999
Alignment:
| Q |
292 |
gatgatgttttcggtgtttgatttatcttgaactaaagatggatttcatttctaatttgaagcttatgttagttcactggttctattattttatggtatt |
391 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
35882821 |
gatgatgttttcactgttcgatttatcttgaactaaagatggatttcatttctaatttgaagcttatgttagttcactggctgtattattttatggtatt |
35882920 |
T |
|
| Q |
392 |
ataaaattagtaaagggtcagagtgaaaa-ccttatctacttgaatatgtaaaatgtaagtgtcaatcattgtacatct |
469 |
Q |
| |
|
||||||||||||||| |||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
35882921 |
gtaaaattagtaaaggatcagagtgaaaatctttatctacttgaatacgtataatgtaagtgtcaatcattgtacatct |
35882999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 10 - 176
Target Start/End: Original strand, 35882315 - 35882478
Alignment:
| Q |
10 |
agatgaattaatgagcgatatggggggagctctacacactaaaccgtgtcatcaaatttaaactctgtcattgtgaaaaatgttttggctccagagtaca |
109 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35882315 |
agatgaattaatgattgaaatggggggagctctacacactacaccgt--catcagatttaaactctgtcattgtgaaaaatgtttgggctccagagtaca |
35882412 |
T |
|
| Q |
110 |
aggtcgttggtacatga-atttttgttctctgtttttatattattcttaattatgatatacacctttt |
176 |
Q |
| |
|
||||| |||||||||| |||||||||| ||||||||||||||||||| || ||||||||| |||| |
|
|
| T |
35882413 |
aggtc--tggtacatgatgtttttgttctatgtttttatattattcttagctaggatatacacttttt |
35882478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 339 - 468
Target Start/End: Original strand, 33311177 - 33311305
Alignment:
| Q |
339 |
atttctaatttgaagcttatgttagttcactggttctattattttatggtattataaaattagtaaagggtcagagtgaaaacctt-atctacttgaata |
437 |
Q |
| |
|
|||| |||||||||||||||||| | | ||||||| |||||||||||||| || |||||||||| |||| |||||||||||| ||| |||||| | |||| |
|
|
| T |
33311177 |
atttataatttgaagcttatgttggct-actggttgtattattttatggt-ttgtaaaattagtgaaggatcagagtgaaaatctttatctacgtaaata |
33311274 |
T |
|
| Q |
438 |
tgtaaaatgtaagtgtcaatcattgtacatc |
468 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| |
|
|
| T |
33311275 |
tgtataatgtaagggtcaatcattgtacatc |
33311305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 175 - 257
Target Start/End: Original strand, 35882635 - 35882717
Alignment:
| Q |
175 |
ttaaaatcaatgtaaaaagcatctagtccaagggagaaagattctggtcatatttggcattaattaactctacttttggctag |
257 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||| ||||||||||| || ||||| ||||||| |||||||||||||||| |
|
|
| T |
35882635 |
ttaaaatcaatctaaaaagcatctagttcaagggaggaagattctggttatggttggcgttaattagctctacttttggctag |
35882717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 279 - 474
Target Start/End: Complemental strand, 10211529 - 10211334
Alignment:
| Q |
279 |
attatgttaaaatgatgatgtttt-cggtgtttgatttatcttgaactaaagatggatttcatttctaatttgaagcttatgttagttcactggttctat |
377 |
Q |
| |
|
||||||||||| ||||||||||| | |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
10211529 |
attatgttaaa--gatgatgtttttcagtgtttgatttatcttgaaccaaaggtggatttcatttctaatttgaagcttatgttggttcactggttataa |
10211432 |
T |
|
| Q |
378 |
tattttatggtattataaaattagtaaagggtcagagtgaaaa-ccttatctacttgaatatgtaaaatgtaagtgtcaatcattgtacatcttagtg |
474 |
Q |
| |
|
| |||||||||| | ||||||||||||| |||||| ||||| | |||| ||| | |||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
10211431 |
tgttttatggtagtgtaaaattagtaaataatcagagcgaaaatctttatgtacgtaaatatgtaaaatgtaagtgtcaatcattgtgcatctcagtg |
10211334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 10211953 - 10211850
Alignment:
| Q |
65 |
atttaaactctgtcattgtgaaaaatgttttggctccagagtacaaggtcgttggtacatgaa-tttttgttctctgtttttatattattcttaattatg |
163 |
Q |
| |
|
|||| |||| |||||| ||||||||||||||||||| | ||||||||||| |||||| |||| |||||||||| | |||||||||||||| || |||| |
|
|
| T |
10211953 |
atttgaactttgtcatcgtgaaaaatgttttggctcaaaagtacaaggtc--tggtacctgaagtttttgttctgtacttttatattattctcaactatg |
10211856 |
T |
|
| Q |
164 |
atatac |
169 |
Q |
| |
|
| |||| |
|
|
| T |
10211855 |
acatac |
10211850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University