View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1879_low_21 (Length: 237)
Name: NF1879_low_21
Description: NF1879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1879_low_21 |
 | |
|
| [»] scaffold0172 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41260712 - 41260931
Alignment:
| Q |
1 |
aagtcaatgctattatgattgaaaactttcaatttcatgaattatattgaaatttcgttaattttatcgataagttatccgacacttataatttaagttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
41260712 |
aagtcaatgctattatgattgaaaactttcaatttcatgaattatattgaaatttcgttaattttctcgacaagttatccgacacttataatttaagttt |
41260811 |
T |
|
| Q |
101 |
tgatcgttcannnnnnnnccaggtactggtgcataggagagtgcactgacaaatacaatgtctcctggggatcgtactatatcttttctaattggccaat |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41260812 |
tgatcgttca-tttttttccaggtactggtgcataggagagtgcactgacaaatacaatgtctcctgggtatcgtactatatcttttctaattggccaat |
41260910 |
T |
|
| Q |
201 |
tcagtttgctttggattgaac |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
41260911 |
tcagtttgctttggattgaac |
41260931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 39189436 - 39189218
Alignment:
| Q |
14 |
tatgattgaaaactttcaatttcatgaattatattgaaatttcgttaattttatcgataagttatccgacacttataatttaagttttgatcgttcannn |
113 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||| | | |||||||||||||| ||| |||||||||| |
|
|
| T |
39189436 |
tatgattgaaaactttcaatttcataaattatattgaaattttgttaattttatagataagtttttcaacacttataatttatgttatgatcgttcattt |
39189337 |
T |
|
| Q |
114 |
nnnnncc-----------aggtactggtgcataggagagtgcactgacaaatacaatgtctcctggggatcgtactatatcttttctaattggccaattc |
202 |
Q |
| |
|
| |||||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39189336 |
atttttctttttcatctcaggtaccggtgcatgggagagtgcattgacaaatacattgtctcctggggatcgtaccgtatcttttctaattggccaattc |
39189237 |
T |
|
| Q |
203 |
agtttgctttggattgaac |
221 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
39189236 |
agcttgctttggattgaac |
39189218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 28460384 - 28460176
Alignment:
| Q |
14 |
tatgattgaaaactttcaatttcatgaattatattgaaatttcgttaattttatcgat-aagttatccgacacttataatttaagttttgatcgttca-- |
110 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||| ||| |||| |
|
|
| T |
28460384 |
tatgattgaaa-ctttcaatttcatgaattatattgaaatttcgttaattttatagatcaagttgtccgacacttataatttaagttatgactcttcatt |
28460286 |
T |
|
| Q |
111 |
-nnnnnnnnccaggtactggtgcataggagagtgcactgacaaatacaatgtctcctggggatcgtactatatcttttctaattggccaattcagtttgc |
209 |
Q |
| |
|
|||||| ||||||| |||||||||| ||||||||||| |||||| ||||||||||| | || |||| ||||||||||||||||||||| |
|
|
| T |
28460285 |
tgttttgtttcaggtatcggtgcatgggagagtgcattgacaaatacattgtctcttggggatcgtagtgta--ttttttaattggccaattcagtttgc |
28460188 |
T |
|
| Q |
210 |
tttggattgaac |
221 |
Q |
| |
|
|||||||||||| |
|
|
| T |
28460187 |
tttggattgaac |
28460176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 219
Target Start/End: Original strand, 16790885 - 16790984
Alignment:
| Q |
120 |
caggtactggtgcataggagagtgcactgacaaatacaatgtctcctggggatcgtactatatcttttctaattggccaattcagtttgctttggattga |
219 |
Q |
| |
|
||||||| ||||| | ||||||||| |||||||| ||| |||| ||||| ||||||| | ||||||| | |||||||||||||||||||||||| |||| |
|
|
| T |
16790885 |
caggtaccggtgcttgggagagtgctctgacaaacacattgtcacctggagatcgtattgtatctttcgtgattggccaattcagtttgctttgggttga |
16790984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 21574 - 21620
Alignment:
| Q |
21 |
gaaaactttcaatttcatgaattatattgaaatttcgttaattttat |
67 |
Q |
| |
|
||||| || ||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
21574 |
gaaaatttccaatttcatgaatcattttgaaatttcgttaattttat |
21620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University