View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1879_low_3 (Length: 484)
Name: NF1879_low_3
Description: NF1879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1879_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 5e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 6281089 - 6281283
Alignment:
| Q |
10 |
attattctacaccacatggttttgatttttgttgttaaattattattggtgcttttaattttatgagatgagattccgggtcaaattttatgagtacgtt |
109 |
Q |
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| T |
6281089 |
attattctacaccatatggttttgatttttgttgttaaattattattggtgcttttaattttataagatgcgattccgggtcaaattttatgagtacgtt |
6281188 |
T |
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| Q |
110 |
caattaattacttgaacacggcaatggtatattatattaaagagtcgtgtgttttttaaggaataataatgagttaggttaacgagtgtcctaag |
204 |
Q |
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| T |
6281189 |
caattaattacttgaacacggcaatggtatattatattaaagagtgatgtgttttttaaggaataataatgagttaggttaacgagtgtcctaag |
6281283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 259 - 484
Target Start/End: Original strand, 6281337 - 6281570
Alignment:
| Q |
259 |
ggggataaatgcaatccttcaaacaatgacaaccctatttggtaatcaccaattgttgcttgattctttggttgaacatggtatagtttacctaattttg |
358 |
Q |
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| T |
6281337 |
ggggataaatgcaatccttgaaataatgacaaccctatttggtaatcaccaattgttgcttgatgctttggtttaacatggtatagtttgcctaattttg |
6281436 |
T |
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| Q |
359 |
atagatacttcagatat------aattattttccgagttacggttttctttgagtttatggtataacaatttagatattttgtagtcgagatagaatttg |
452 |
Q |
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| T |
6281437 |
atagatacttgagatatgtcttcaattattttcctagttacgattttctttgagtttatggtataacaatttcgatattttgtagtcgagttagaatttg |
6281536 |
T |
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| Q |
453 |
--aaaaatgttacttttatttattcataacaaat |
484 |
Q |
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| T |
6281537 |
tagagaatgttactcttatttattcataacaaat |
6281570 |
T |
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