View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1879_low_4 (Length: 445)
Name: NF1879_low_4
Description: NF1879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1879_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 3244452 - 3244017
Alignment:
| Q |
1 |
atctttcaatctattattaatcacaatccatattatatttattcattgatcaggtgttacattaatgcatccttatgttttgctccgaaatgttaaattt |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3244452 |
atctttcaatctattaataatcacaatccatattatatttattcattgatcaggtgttacattaatgcatcctcatgttttgctccgaaatgttaaattt |
3244353 |
T |
|
| Q |
101 |
caaaggacaatgataagtttcatttatttgaaaacaatgttcttaatagcagatcgcagaaaataacattttgttcaaattctgctacacaatagtacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
3244352 |
caaaggacaatgataagtttcatttatttgaaaacaatgttcttaatagcagatcgcagaaaataacattttgttcaaattctgctacaccatagcacta |
3244253 |
T |
|
| Q |
201 |
taatgccatcatagccactatttgacaatttttgcactaaatattatactgtggaaaaatgcnnnnnnnnnnngctgaggaaaaatgctatttgttcaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3244252 |
taatgccatcatagccactatttgacaatttttgcactaaatattatactgcagaaaaatgctttttttttt---tgaggaaaaatgctatttgttcaaa |
3244156 |
T |
|
| Q |
301 |
ttcaatcacgctacggcgttaaagcgcaattatctttttgatgacacatgcaaatatgagtttatttaccttgtaaaagttatgttgtggtcttgagagt |
400 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3244155 |
ttcaatcacgctatagcgttaaagtgcaattatctttgtgatgacacatgcaaatatgagtttatttaccttgtaaaagttatgttgtggtcttgagagt |
3244056 |
T |
|
| Q |
401 |
acaggttttccattataagcttgagttagcttcttctca |
439 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3244055 |
acaggttttccattataagcttgagctagcttcttctca |
3244017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 5744549 - 5744511
Alignment:
| Q |
149 |
gcagatcgcagaaaataacattttgttcaaattctgcta |
187 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
5744549 |
gcagattgcagaaaataacagtttgttcaaattctgcta |
5744511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 34081050 - 34081104
Alignment:
| Q |
173 |
gttcaaattctgctacacaatagtactataatgccatcatagccactatttgaca |
227 |
Q |
| |
|
||||||||||||| ||||||||| |||||| ||| | ||||||||||||||||| |
|
|
| T |
34081050 |
gttcaaattctgccacacaatagcactatagtgcagtaatagccactatttgaca |
34081104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 7277203 - 7277157
Alignment:
| Q |
145 |
aatagcagatcgcagaaaataacattttgttcaaattctgctacaca |
191 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||| |||||| |
|
|
| T |
7277203 |
aatagcagatcatagaaaataacagtttgttcaaattctgttacaca |
7277157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 2316932 - 2316989
Alignment:
| Q |
135 |
caatgttcttaatagcagatcgcagaaaataacattttgttcaaattctgctacacaa |
192 |
Q |
| |
|
||||||| | ||| |||||||||| |||||| || ||||||||||||| ||||||||| |
|
|
| T |
2316932 |
caatgttgtcaattgcagatcgcacaaaatagcagtttgttcaaattccgctacacaa |
2316989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 188
Target Start/End: Complemental strand, 1046690 - 1046658
Alignment:
| Q |
156 |
gcagaaaataacattttgttcaaattctgctac |
188 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
1046690 |
gcagaaaataacagtttgttcaaattctgctac |
1046658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 39032493 - 39032545
Alignment:
| Q |
150 |
cagatcgcagaaaataacattttgttcaaattctgctacacaatagtactata |
202 |
Q |
| |
|
||||| || |||||||||| |||||| |||||||||||| ||||||| ||||| |
|
|
| T |
39032493 |
cagattgcggaaaataacagtttgttgaaattctgctacgcaatagtgctata |
39032545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 7600430 - 7600463
Alignment:
| Q |
169 |
ttttgttcaaattctgctacacaatagtactata |
202 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
7600430 |
ttttgttcaaattctgctacacaatagtgctata |
7600463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University