View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1879_low_5 (Length: 428)
Name: NF1879_low_5
Description: NF1879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1879_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 8467702 - 8467380
Alignment:
| Q |
1 |
caaaaaacttgacttaataatttgtttggtaaagtaaagaaaaatagaaaactaatttcccccaacctcgctgatctgatcaccatagatataatatgag |
100 |
Q |
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| T |
8467702 |
caaaaaacttgacttaataatttgtttggtaaagtaaagaaaaatagaaaactaatttcccccaacctcgctgatctgatcaccatagatataagatgag |
8467603 |
T |
|
| Q |
101 |
cctcttctaatgtaaacctagcctcatccaagaataaattactagaaaataaaggcatgggaaagtaggaaaacataaaccagctgctagctagggtttt |
200 |
Q |
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| T |
8467602 |
cctcttctaatgtaaacctagcctcatccaagaataaattactagaaaataaaggcatgggaaagtaggaaaacataaaccagctgctagctagggtttt |
8467503 |
T |
|
| Q |
201 |
catcaaacaagatggattatatgcatacaatggtgattgtatgaaataataaatgaattattaataaaatagaacaagctattttcacaaattaagctct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8467502 |
catcaaacaagatggattatatgcatacaatggtgattgtatgaaataataaatgaattattaataaaatagaacaagctattttcacaaattaagctct |
8467403 |
T |
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| Q |
301 |
gacactgcacacaagcatactag |
323 |
Q |
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|||||||||||||| |||||||| |
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| T |
8467402 |
gacactgcacacaaccatactag |
8467380 |
T |
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