View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1879_low_7 (Length: 388)
Name: NF1879_low_7
Description: NF1879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1879_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 13 - 371
Target Start/End: Original strand, 31577263 - 31577620
Alignment:
| Q |
13 |
aatattaagtgtgttaccaaaatcatacaggaattagttgataagctactattacttgatcaaaattagcttagatattttttgaagtgatttttataga |
112 |
Q |
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| T |
31577263 |
aatattaagtgtgttaccaaaatcatacaggaattagttgataagctactattacttgatcaaaattagcttagatatttttttaagtgatttttataga |
31577362 |
T |
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| Q |
113 |
gttgctctcttgtaggagactttggtccccattctaaaactcagaaaacctactcatgaaagtgcaattaagttaggtcacatttattcagcaggtttgc |
212 |
Q |
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| T |
31577363 |
gttgctctcttgtaggagactttggtccccattctaaaactcagaaa-cctactcatgaaagtgcaattaagttaggtcacatttattcagcaggtttgc |
31577461 |
T |
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| Q |
213 |
ctcttttagtatcttggctagcattcaattactcaacaatacacaagctcaacatatggaccaaccatcatttaagtttgatgattcacattggacccga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31577462 |
ctcttttagtatcttggctagcattcaattactcaacaatacacaagctcaacatatggaccaaccatcatttaagtttgatgattcacattggacccga |
31577561 |
T |
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| Q |
313 |
cacaactataagttcttggttcttttgaattcatcaataccttagtggaactactatat |
371 |
Q |
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| T |
31577562 |
cacaactataagttcttggttcttttgaattcatcaataccttagtggaactactatat |
31577620 |
T |
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