View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1879_low_9 (Length: 344)
Name: NF1879_low_9
Description: NF1879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1879_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 6e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 97 - 295
Target Start/End: Complemental strand, 32400312 - 32400108
Alignment:
| Q |
97 |
aatgaatatcgtatgtaaattttaaaaataaatgaatat---aatttatatatgcacactgat---tcggttctaaaatttaatttgatttgagtggttt |
190 |
Q |
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| T |
32400312 |
aatgaatatcgtatgtaaattttaaaaataaatgaatattataatttatatatgcacactgataattcggttctaaaatttaatttgatttgagtggttt |
32400213 |
T |
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| Q |
191 |
ccacaaaaggaaatccgaaaaattcaactatattttgttttatgtggatttcaaacttgtgtcggtatgtgatttttatcgggatctttttggatatgaa |
290 |
Q |
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| T |
32400212 |
ccacaaaaggaaatccgaaaaattcaactatattttgttttatgtggatttcaaacttgtgtcggtatgtgatttttatcggaatctttttggatatgaa |
32400113 |
T |
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| Q |
291 |
acatc |
295 |
Q |
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||||| |
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| T |
32400112 |
acatc |
32400108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 32400708 - 32400635
Alignment:
| Q |
15 |
tggactggtagggcaatttcaattaaaaagcatacgatcttaggatgcattcatttaaaaaatatctcatgcaa |
88 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32400708 |
tggactggtagggcaatttcaattaaaaaacatacgatcttaggatgcattcatttaaaaaatatctcatgcaa |
32400635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 344
Target Start/End: Complemental strand, 32400121 - 32400091
Alignment:
| Q |
314 |
ggatatgaaacatcttattaagtggtaatat |
344 |
Q |
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| T |
32400121 |
ggatatgaaacatcttattaagtggtaatat |
32400091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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