View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18800_high_3 (Length: 343)
Name: NF18800_high_3
Description: NF18800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18800_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 328
Target Start/End: Complemental strand, 14515460 - 14515148
Alignment:
| Q |
16 |
atattttaaaatagctcagggttccgatccttgaaagatgttagtcaaagtcggattgaatttttctaaggatgcatttgatttattaaaaattgaagat |
115 |
Q |
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| T |
14515460 |
atattttaaaatagctcagggttccgatctttgaaagacgttagtcaaagtcgggttgaatttctctaaggatgcatttgatttgttaaaaattgaaaat |
14515361 |
T |
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| Q |
116 |
tttgtcgaagaaattcccgcgaatctggtgcatttgacagtaggagttaatatatattaccggtgattgagattggcagtttttggattgtttaccaagg |
215 |
Q |
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| T |
14515360 |
tttgtcgaagaaattcctgcgaatctggtgcatttgacagtagtagttaatatatattaccggtgattgagattggcagtttttggattgtttaccaagg |
14515261 |
T |
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| Q |
216 |
gatatcaaaaagaatattcactctatattatgccacctcatcatgagttgggagatgatttgaatttgtggcctagttatagagttgatacatttacagc |
315 |
Q |
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| T |
14515260 |
gatatcaaaaagaatattcactctatattatgccacctcatcatgagttgggagatgatttgaatttgtggcctagttatagagttgatacatttacagc |
14515161 |
T |
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| Q |
316 |
tgcaagtgcattt |
328 |
Q |
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| T |
14515160 |
tgcaagtgcattt |
14515148 |
T |
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