View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18800_high_4 (Length: 339)
Name: NF18800_high_4
Description: NF18800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18800_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 320
Target Start/End: Complemental strand, 37749169 - 37748858
Alignment:
| Q |
13 |
atcaactaaacaacaaggcagatgtggtaatggtttatgcatatgagattggcacttggttattgata-------tgtcaataatggcttttgaaaagga |
105 |
Q |
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| T |
37749169 |
atcaactaaacaacaaggcagatgtggtaatggtttatgcatatgagattggcacttggttattaatacatgtggtgtcaataatggcttttgaaaagga |
37749070 |
T |
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| Q |
106 |
gttttctcatgtcaagaaatgggagaagtgggtagtgaggatacaagaaatctttggtttgcagatattgctagaaaagatccaaagtggtattcaaaaa |
205 |
Q |
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| T |
37749069 |
gttttctcaagtcaagaaatgggagaagtgggtagtgaggatacaagaaatctttggtttgcagatattgctagaaaagatccaaagtggtattcaaaaa |
37748970 |
T |
|
| Q |
206 |
gaggaagagaaggcttcctgcgagaaacccatgaaaggagatnnnnnnngttcttttcaagatccatgagagtgtggataaagtgaattcagaagaaaga |
305 |
Q |
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| T |
37748969 |
gaggaagag-aggcttcctgcgagaaatccatgaaaggagataaaaaaagctcttttcaagatccat--gagtgtggataaagtgaattcagaagaaaga |
37748873 |
T |
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| Q |
306 |
gataataaggctctg |
320 |
Q |
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| T |
37748872 |
gataataaggctctg |
37748858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 324
Target Start/End: Original strand, 43039663 - 43039980
Alignment:
| Q |
13 |
atcaactaaacaacaaggcagatgtggtaatggtttatgcatatgagattggcacttggttattgata-------tgtcaataatggcttttgaaaagga |
105 |
Q |
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| T |
43039663 |
atcaactaagcaacaaggcagaggtggtaatggtttatgcatatgttattagcacttggttattgatacatgtggtgtcaataatggcttttgaaaagga |
43039762 |
T |
|
| Q |
106 |
gttttctcatgtcaagaaatgggagaagtgggtagtgaggatacaagaaatctttggtttgcagatattgctagaaaagatccaaagtggtattcaaaaa |
205 |
Q |
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| T |
43039763 |
gttttctcaagtcaagaaatgggagaagtgggtagtgaggatacaagaaatctttggtttgcagagattgctagaaaagatccaaagtggtattcaaaaa |
43039862 |
T |
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| Q |
206 |
gaggaagagaaggcttcctgcgagaaacccatgaaaggagatnnnnnnngttcttttcaagatccatgagagtgtggataaagtgaattcagaagaaaga |
305 |
Q |
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| T |
43039863 |
gaggaagagaaggcttcctgcgagaaatccatgaaaggagat-aaaaaggctcttttcaagatccatgagagtgtggataaagcgaattcagaagaaaga |
43039961 |
T |
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| Q |
306 |
gataataaggctctgttct |
324 |
Q |
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| T |
43039962 |
gataataaggctctgttct |
43039980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 81 - 247
Target Start/End: Complemental strand, 13108920 - 13108758
Alignment:
| Q |
81 |
tgtcaataatggcttttgaaaaggagttttctcatgtcaagaaatgggagaagtgggtagtgaggatacaagaaatctttggtttgcagatattgctaga |
180 |
Q |
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||||||||||| || ||||||| ||||||||| | || ||||| |||| ||||| ||| |||||||||||||||||||||||||||| | ||||||||| |
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| T |
13108920 |
tgtcaataatgtctattgaaaatgagttttcttaagttaagaatcgggaaaagtgtgtactgaggatacaagaaatctttggtttgcaaagattgctaga |
13108821 |
T |
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| Q |
181 |
aaagatccaaagtggtattcaaaaagaggaagagaaggcttcctgcgagaaacccatgaaaggagat |
247 |
Q |
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| T |
13108820 |
aaagatccaaagacgtat----aaagaggaagagaaggcttcctgcgagaaatccatggaaagagat |
13108758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 168
Target Start/End: Complemental strand, 43379352 - 43379269
Alignment:
| Q |
85 |
aataatggcttttgaaaaggagttttctcatgtcaagaaatgggagaagtgggtagtgaggatacaagaaatctttggtttgca |
168 |
Q |
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| T |
43379352 |
aataatggcttttgaaaaagagttttctcaagtcaagaattgagagaaatggatagtgaggaagaaaaaaatctttggtctgca |
43379269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 13108718 - 13108653
Alignment:
| Q |
257 |
tcttttcaagatccatgagagtgtggataaagtgaattcagaagaaagagataataaggctctgttct |
324 |
Q |
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| T |
13108718 |
tcttttcaagatccatgag--tgtggatgaagtgaattcaaaggagagacatcagaaggctctgttct |
13108653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 192
Target Start/End: Complemental strand, 50329485 - 50329377
Alignment:
| Q |
83 |
tcaataatggcttttgaaaaggagttttctcatgtcaagaaatgggagaagtgggtagtgaggatacaagaaatctttggtttgcagatattgctagaaa |
182 |
Q |
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||||||||| ||||| || | ||||||||||| |||||||| || |||||||| |||||||||| | ||||||| |||||||||| | | ||||||||| |
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| T |
50329485 |
tcaataatgactttttaagaagagttttctcaggtcaagaattgtgagaagtgtctagtgaggatgcgagaaatc-ttggtttgcaaagaatgctagaaa |
50329387 |
T |
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| Q |
183 |
agatccaaag |
192 |
Q |
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|||||||||| |
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| T |
50329386 |
agatccaaag |
50329377 |
T |
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