View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18800_high_7 (Length: 256)

Name: NF18800_high_7
Description: NF18800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18800_high_7
NF18800_high_7
[»] chr4 (7 HSPs)
chr4 (3-240)||(53469730-53469967)
chr4 (7-96)||(53472622-53472710)
chr4 (11-98)||(9010892-9010979)
chr4 (10-94)||(13816904-13816988)
chr4 (10-96)||(29235206-29235291)
chr4 (3-54)||(27272572-27272623)
chr4 (3-65)||(10395953-10396015)
[»] chr7 (6 HSPs)
chr7 (34-240)||(1344924-1345129)
chr7 (54-171)||(1103003-1103119)
chr7 (129-240)||(1102890-1103003)
chr7 (3-84)||(1103129-1103210)
chr7 (3-65)||(7961767-7961829)
chr7 (3-69)||(11269943-11270009)
[»] chr1 (4 HSPs)
chr1 (10-132)||(24284746-24284868)
chr1 (3-65)||(22827104-22827166)
chr1 (28-101)||(24272702-24272774)
chr1 (3-65)||(22840959-22841021)
[»] chr3 (3 HSPs)
chr3 (1-100)||(31141359-31141458)
chr3 (8-98)||(30046375-30046467)
chr3 (3-69)||(25889610-25889676)
[»] chr6 (7 HSPs)
chr6 (3-98)||(14721666-14721760)
chr6 (3-69)||(11678826-11678892)
chr6 (8-65)||(13558057-13558114)
chr6 (9-66)||(27340686-27340743)
chr6 (9-66)||(27401426-27401483)
chr6 (4-65)||(2921920-2921981)
chr6 (3-62)||(2923235-2923295)
[»] chr2 (6 HSPs)
chr2 (4-103)||(37965559-37965658)
chr2 (3-98)||(8761249-8761345)
chr2 (3-98)||(10128458-10128553)
chr2 (4-84)||(15140779-15140859)
chr2 (54-98)||(15140725-15140769)
chr2 (3-43)||(25550091-25550131)
[»] chr5 (4 HSPs)
chr5 (1-69)||(32795605-32795673)
chr5 (3-69)||(32796371-32796437)
chr5 (10-53)||(26896582-26896625)
chr5 (3-69)||(19670656-19670722)
[»] chr8 (1 HSPs)
chr8 (3-83)||(33897182-33897262)
[»] scaffold0007 (1 HSPs)
scaffold0007 (55-101)||(260489-260535)


Alignment Details
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 53469730 - 53469967
Alignment:
Q  3 caagacttttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacattttcctaacattaattcaagacatatttcaacaaatc 102  Q
    ||||||||||||||||||| | || ||||||||||||||||| |||| || ||||| | ||||||||| |||||||||| ||| ||||||||||||||||    
T  53469730 caagacttttatttatatgaccaagtctttgcatatttcttcatattatctgatgtagaacattttcccaacattaattaaaggcatatttcaacaaatc 53469829  T
Q  103 tccactttaacttgaatcctctccggataatcaaatgcactagatgtactcgaagtaccagatgtgccagatgcattacacagaatacccaaatgagtac 202  Q
    ||||   | ||||||||| ||||| ||||| || |||||| ||||| ||| || |||||||||||| ||||||||||||||||||| |||| |||||       
T  53469830 tccatcgtgacttgaatcttctcctgataaccagatgcaccagatgcacttgacgtaccagatgtggcagatgcattacacagaatgcccagatgagcct 53469929  T
Q  203 gctctgcctcaggtcttgcccttacaagggcaatcaac 240  Q
     |||||||||||| ||||||| | | ||||||||||||    
T  53469930 actctgcctcaggccttgcccctcctagggcaatcaac 53469967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 53472622 - 53472710
Alignment:
Q  7 acttttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacattttcctaacattaattcaagacatatttcaa 96  Q
    ||||||||||||||||| || ||||||||||||||||| |||| |||||||||| ||||||||| |||| ||||||||| ||||||||||    
T  53472622 acttttatttatatggc-aagtctttgcatatttcttcgtattatccgatgtggaacattttcccaacactaattcaaggcatatttcaa 53472710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 9010892 - 9010979
Alignment:
Q  11 ttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacattttcctaacattaattcaagacatatttcaaca 98  Q
    ||||||||||||| || || | |||||||||||| |||  ||||||||||||||| ||||||||| |||||| || ||||||||||||    
T  9010892 ttatttatatggccaagtcatagcatatttcttcatatcatccgatgtgggacatattcctaacactaattccaggcatatttcaaca 9010979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 13816988 - 13816904
Alignment:
Q  10 tttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacattttcctaacattaattcaagacatatttc 94  Q
    |||||||||||| | || |||| |||||||||||| |||||| ||||||| ||| |||||| |||||||||||||  ||||||||    
T  13816988 tttatttatatgaccaagtcttcgcatatttcttcatattcttcgatgtgagactttttcccaacattaattcaatgcatatttc 13816904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 29235206 - 29235291
Alignment:
Q  10 tttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacattttcctaacattaattcaagacatatttcaa 96  Q
    |||||||||||||| || ||||||||||||| ||| |||  |||||||||||| ||||||| |||| |||||||||  |||||||||    
T  29235206 tttatttatatggccaagtctttgcatattttttcatataatccgatgtgggatattttcccaaca-taattcaaggaatatttcaa 29235291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 27272623 - 27272572
Alignment:
Q  3 caagacttttatttatatggctaaatctttgcatatttcttcctattctccg 54  Q
    ||||||||||||||||||| | ||| |||||||||||||||| |||| ||||    
T  27272623 caagacttttatttatatgaccaaacctttgcatatttcttcatattatccg 27272572  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 10396015 - 10395953
Alignment:
Q  3 caagacttttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacat 65  Q
    |||| ||||||||||||||||  | ||||||||||||||||| | ||||| |||||| |||||    
T  10396015 caaggcttttatttatatggccgagtctttgcatatttcttcatcttctctgatgtgagacat 10395953  T

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Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 34 - 240
Target Start/End: Complemental strand, 1345129 - 1344924
Alignment:
Q  34 catatttcttcctattctccgatgtgggacattttcctaacattaattcaagacatatttcaacaaatctccactttaacttgaatcctctccggataat 133  Q
    ||||||||||| |||||| ||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||| || |||||||||||||||| |||||    
T  1345129 catatttcttcttattcttcgatgtgagactttttc-taacactaattcaagacatatttcaacaaatctccaccttgacttgaatcctctccgaataat 1345031  T
Q  134 caaatgcactagatgtactcgaagtaccagatgtgccagatgcattacacagaatacccaaatgagtacgctctgcctcaggtcttgcccttacaagggc 233  Q
    || |||||| ||||||||||||| |||||||||||||| ||||||||||  |||| | || ||| |   ||||||||||||| ||||||| |   |||||    
T  1345030 cagatgcaccagatgtactcgaattaccagatgtgccaaatgcattacattgaatgctcatatgggcctgctctgcctcaggccttgcccctctgagggc 1344931  T
Q  234 aatcaac 240  Q
    |||||||    
T  1344930 aatcaac 1344924  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 171
Target Start/End: Complemental strand, 1103119 - 1103003
Alignment:
Q  54 gatgtgggacattttcctaacattaattcaagacatatttcaacaaatctccactttaacttgaatcctctccggataatcaaatgcactagatgtactc 153  Q
    |||||| |||||||||| |||| ||||||||| ||||||||| ||||||||||| || ||||||||| ||||| | ||| || |||||  |||||||||     
T  1103119 gatgtgagacattttcccaacactaattcaaggcatatttca-caaatctccaccttgacttgaatcttctccaggtaaccagatgcataagatgtactt 1103021  T
Q  154 gaagtaccagatgtgcca 171  Q
    ||||||||| ||||||||    
T  1103020 gaagtaccaaatgtgcca 1103003  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 240
Target Start/End: Complemental strand, 1103003 - 1102890
Alignment:
Q  129 ataatcaaatgcactagatgtactcgaagtaccagat--gtgccagatgcattacacagaatacccaaatgagtacgctctgcctcaggtcttgccctta 226  Q
    ||||||| |||||| |||| |||| ||||||||| ||  |||||||||||||||||||||||  ||| |||||   ||||||||||||| ||||||| |     
T  1103003 ataatcagatgcaccagatatacttgaagtaccatatatgtgccagatgcattacacagaatgtccagatgagcctgctctgcctcaggccttgcccctc 1102904  T
Q  227 caagggcaatcaac 240  Q
    | ||||||||||||    
T  1102903 ccagggcaatcaac 1102890  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 1103210 - 1103129
Alignment:
Q  3 caagacttttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacattttcctaacattaattcaa 84  Q
    |||| |||||||||||||||| || ||||| ||||||||||| |||| ||||||||||||| |||| | |||| ||||||||    
T  1103210 caaggcttttatttatatggccaagtctttacatatttcttcatattatccgatgtgggacgtttttccaacactaattcaa 1103129  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 7961829 - 7961767
Alignment:
Q  3 caagacttttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacat 65  Q
    |||| |||||||||||||| | ||| |||||||||||||||| |||| | |||||||||||||    
T  7961829 caaggcttttatttatatgaccaaacctttgcatatttcttcatattatgcgatgtgggacat 7961767  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 11270009 - 11269943
Alignment:
Q  3 caagacttttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacattttc 69  Q
    |||| |||||||||||||| | |||  |||  |||||||||| |||| |||||||||||||||||||    
T  11270009 caaggcttttatttatatgaccaaacttttttatatttcttcatattatccgatgtgggacattttc 11269943  T

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Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 132
Target Start/End: Complemental strand, 24284868 - 24284746
Alignment:
Q  10 tttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacattttcctaacattaattcaagacatatttcaacaaatctccactt 109  Q
    ||||||||||| || |||| ||||||||||| ||| ||||||| |||||||||| |||||| || ||||||||||| ||||||||||||||| ||||| |    
T  24284868 tttatttatatagccaaatatttgcatatttgttcatattctctgatgtgggactttttcccaatattaattcaaggcatatttcaacaaatttccacct 24284769  T
Q  110 taacttgaatcctctccggataa 132  Q
    | ||||||||||||||| |||||    
T  24284768 tgacttgaatcctctccagataa 24284746  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 22827104 - 22827166
Alignment:
Q  3 caagacttttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacat 65  Q
    |||| |||||||||||||| | ||| |||||||||||||||| |||| |||||||||||||||    
T  22827104 caaggcttttatttatatgaccaaacctttgcatatttcttcatattatccgatgtgggacat 22827166  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 24272774 - 24272702
Alignment:
Q  28 tctttgcatatttcttcctattctccgatgtgggacattttcctaacattaattcaagacatatttcaacaaat 101  Q
    ||||||||||||||||| || ||| ||||||| ||  |||||| |||| |||||||||||||||||||||||||    
T  24272774 tctttgcatatttcttcatactctacgatgtgagattttttcc-aacactaattcaagacatatttcaacaaat 24272702  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 22841021 - 22840959
Alignment:
Q  3 caagacttttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacat 65  Q
    |||| ||||||||| |||| | ||  |||||||||||||||| |||| |||||||||||||||    
T  22841021 caaggcttttatttttatgaccaagcctttgcatatttcttcatattatccgatgtgggacat 22840959  T

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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 31141458 - 31141359
Alignment:
Q  1 cgcaagacttttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacattttcctaacattaattcaagacatatttcaacaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||| |||||| || || |||  |||||||||||||    
T  31141458 cgcaagacttttatttatatggctaaatctttgcatatttcttcctattctctgatgtgagacttttttctaacaatattttaagttatatttcaacaaa 31141359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 30046467 - 30046375
Alignment:
Q  8 cttttatttatatggctaaatctttgcatatttctt--cctattctccgatgtgggacattttcctaacattaattcaagacatatttcaaca 98  Q
    |||||||||||||||  || ||||||||||||| ||  | |||| |||||| || |||||||||| |||||||||||||| ||||||||||||    
T  30046467 cttttatttatatggtcaagtctttgcatattttttttcatattatccgatatgagacattttcccaacattaattcaaggcatatttcaaca 30046375  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 25889676 - 25889610
Alignment:
Q  3 caagacttttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacattttc 69  Q
    ||||||||||||||||||| | ||| |||||||||  ||||| | || |||||||||||||||||||    
T  25889676 caagacttttatttatatgaccaaacctttgcataactcttcatgttatccgatgtgggacattttc 25889610  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 14721760 - 14721666
Alignment:
Q  3 caagacttttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacattttcctaacattaattcaagacatatttcaaca 98  Q
    |||| |||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| | ||||| ||||||    
T  14721760 caaggcttttatttata-ggccaaatctttgcatatttctttctattctccgatgtgggacattttcccaacattaattcatggcatatgtcaaca 14721666  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 11678892 - 11678826
Alignment:
Q  3 caagacttttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacattttc 69  Q
    ||||| ||||||||| ||| | ||  |||||||||||||||| |||| |||||||||||||||||||    
T  11678892 caagagttttatttacatgaccaagcctttgcatatttcttcatattatccgatgtgggacattttc 11678826  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 13558057 - 13558114
Alignment:
Q  8 cttttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacat 65  Q
    |||||||||||||| | ||  |||||||||||||||| |||| |||||||||||||||    
T  13558057 cttttatttatatgaccaagcctttgcatatttcttcatattatccgatgtgggacat 13558114  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 27340686 - 27340743
Alignment:
Q  9 ttttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacatt 66  Q
    ||||||||||||| | ||  |||||||||||||||| |||| ||||||||||||||||    
T  27340686 ttttatttatatgaccaagcctttgcatatttcttcatattatccgatgtgggacatt 27340743  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 27401426 - 27401483
Alignment:
Q  9 ttttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacatt 66  Q
    ||||||||||||| | ||  |||||||||||||||| |||| ||||||||||||||||    
T  27401426 ttttatttatatgaccaagcctttgcatatttcttcatattatccgatgtgggacatt 27401483  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 2921920 - 2921981
Alignment:
Q  4 aagacttttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacat 65  Q
    |||||||||||||||||  | || || |||||||||||||| |||| ||||||||| |||||    
T  2921920 aagacttttatttatattaccaagtcattgcatatttcttcatattatccgatgtgagacat 2921981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 2923235 - 2923295
Alignment:
Q  3 caagacttttatttatatggctaaatcttt-gcatatttcttcctattctccgatgtggga 62  Q
    ||||||||||||||||||| | ||  |||| |||||||||||| |||| ||||||||||||    
T  2923235 caagacttttatttatatgaccaagccttttgcatatttcttcatattatccgatgtggga 2923295  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 37965559 - 37965658
Alignment:
Q  4 aagacttttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacattttcctaacattaattcaagacatatttcaacaaatct 103  Q
    |||||||||||||||||  | || ||||||||||||||||| |||| ||||||||| |||||||||| |||| ||||||||| |||||||||||||||||    
T  37965559 aagacttttatttatatatccaagtctttgcatatttcttcatattatccgatgtgagacattttcccaacactaattcaaggcatatttcaacaaatct 37965658  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 8761249 - 8761345
Alignment:
Q  3 caagacttttatttatatggctaaa-tctttgcatatttcttcctattctccgatgtgggacattttcctaacattaattcaagacatatttcaaca 98  Q
    ||||||||||||||||||| | ||| | ||||||||||||||| |||| || ||||||||||||||||| ||||  |||||||||||||||||||||    
T  8761249 caagacttttatttatatgaccaaagtatttgcatatttcttcatattatctgatgtgggacattttcccaacacaaattcaagacatatttcaaca 8761345  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 10128553 - 10128458
Alignment:
Q  3 caagacttttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacattttcctaacattaattcaagacatatttcaaca 98  Q
    ||||||||||||||||||| | || ||||| ||||||||||| ||||||||||||||| | ||||| | |||| ||||||| ||||||||||||||    
T  10128553 caagacttttatttatatgaccaagtctttccatatttcttcatattctccgatgtggaatatttttccaacactaattcaggacatatttcaaca 10128458  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 15140859 - 15140779
Alignment:
Q  4 aagacttttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacattttcctaacattaattcaa 84  Q
    |||||||||||||||||| | |||||||| ||||||||||| | ||  ||||||||||||||  ||| |||| ||||||||    
T  15140859 aagacttttatttatatgaccaaatctttacatatttcttcattttaaccgatgtgggacataatcccaacactaattcaa 15140779  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 15140769 - 15140725
Alignment:
Q  54 gatgtgggacattttcctaacattaattcaagacatatttcaaca 98  Q
    ||||||||||||||| | |||| ||||||||||||||||||||||    
T  15140769 gatgtgggacatttttccaacactaattcaagacatatttcaaca 15140725  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 25550131 - 25550091
Alignment:
Q  3 caagacttttatttatatggctaaatctttgcatatttctt 43  Q
    ||||||||||||||||||||| |||||||| ||||||||||    
T  25550131 caagacttttatttatatggccaaatctttacatatttctt 25550091  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 32795605 - 32795673
Alignment:
Q  1 cgcaagacttttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacattttc 69  Q
    ||||||||||||||| ||||| |||| ||||||||||||||||| |||| |||||||||||||||||||    
T  32795605 cgcaagacttttattaatatgactaagtctttgcatatttcttcatattatccgatgtgggacattttc 32795673  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 32796371 - 32796437
Alignment:
Q  3 caagacttttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacattttc 69  Q
    |||| |||||||||||||| ||||  |||||||||||||||| |||| |||||| ||||||||||||    
T  32796371 caaggcttttatttatatgactaagcctttgcatatttcttcatattatccgatctgggacattttc 32796437  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 26896625 - 26896582
Alignment:
Q  10 tttatttatatggctaaatctttgcatatttcttcctattctcc 53  Q
    |||||||||||||| || ||||||||||||||||||||||||||    
T  26896625 tttatttatatggccaagtctttgcatatttcttcctattctcc 26896582  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 19670722 - 19670656
Alignment:
Q  3 caagacttttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacattttc 69  Q
    |||| |||||||||||||| ||||  |||||||||||||||| |||| ||  ||||| |||||||||    
T  19670722 caaggcttttatttatatgactaagcctttgcatatttcttcatattatcttatgtgagacattttc 19670656  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 33897262 - 33897182
Alignment:
Q  3 caagacttttatttatatggctaaatctttgcatatttcttcctattctccgatgtgggacattttcctaacattaattca 83  Q
    |||||||||||||||||| |  |||||||| |||||||||||||||| |  ||| | ||||||||||| |||| |||||||    
T  33897262 caagacttttatttatattgtcaaatctttacatatttcttcctattatatgatattggacattttcccaacactaattca 33897182  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 260489 - 260535
Alignment:
Q  55 atgtgggacattttcctaacattaattcaagacatatttcaacaaat 101  Q
    |||| ||||||||||| |||| |||||||| ||||||||||||||||    
T  260489 atgtaggacattttcccaacactaattcaaaacatatttcaacaaat 260535  T

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