View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18800_low_1 (Length: 523)
Name: NF18800_low_1
Description: NF18800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18800_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 19 - 517
Target Start/End: Original strand, 49942327 - 49942826
Alignment:
| Q |
19 |
acaaatagatcatgaaagtaaagaacttaggttagagaagcacctcaccacttgccctccctttagaccatgtaactggaatgtctaggatcctttcaaa |
118 |
Q |
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| T |
49942327 |
acaaatagatcatgaaagtaaagaacttaggttagagaagcacctcaccacttgccctccctttagaccatgtaactggaatgtctaggatcctttcaaa |
49942426 |
T |
|
| Q |
119 |
tagctgcatagaactcaagccagacataaactgtttaagcatcc-gtacaggatatatggcaaaatagaaagttgnnnnnnntttggaactttaagttac |
217 |
Q |
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| T |
49942427 |
tagctgcatagcactcaagccagacataaactgtttaagcatcccgtacaggatatatggcaaaatagaaagttgaaaaaaatttggaactttaagttac |
49942526 |
T |
|
| Q |
218 |
tatataccggaacataaagattgtcaactttcaaattagtatgccatttctcctcagtagtgtcaacagaaatatttgcagacaaccaaccaccatcttt |
317 |
Q |
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| T |
49942527 |
tatataccggaacataaagattgtcaactttcaaattagtatgccatttctcctcagtagtgtcaacaaaaatatttgcggacaaccaaccaccatcttt |
49942626 |
T |
|
| Q |
318 |
gcatgtaacatctgatctccacggtttacaatttccactcatctgtacattcatatggctgtagttgttatgaaacttcacatggccattgacattctcc |
417 |
Q |
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| T |
49942627 |
gcatgtaacatctgatctccacggtttacaatttccactcatctgtacattcatatggctgtagttgttatgaaacttcacatggccattgacattctcc |
49942726 |
T |
|
| Q |
418 |
atctccctgaaagtaaggcatatagaacatataaattcatgcagattaccatttttcaaataagatttcgggttccaaatgtcgaacatagaattatcta |
517 |
Q |
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| T |
49942727 |
atctccctgaaagtaagacatatagaacatataaattcatgcagattaccatttttcaaataagatttcgggttccaaatgtcgaacatagaagtatcta |
49942826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 432
Target Start/End: Complemental strand, 1905239 - 1905198
Alignment:
| Q |
391 |
aacttcacatggccattgacattctccatctccctgaaagta |
432 |
Q |
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| T |
1905239 |
aactttacatgcccattgacattctccatctccctggaagta |
1905198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 1905566 - 1905481
Alignment:
| Q |
59 |
cacctcaccacttgccctccctttagaccatgtaactggaatgtctaggatcctttcaaatagctgcatagaactcaagccagaca |
144 |
Q |
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| T |
1905566 |
cacctcgccactagccctccctttagaccacataattggaatctctaagagccgttcaaacagctgcacagcattcaagtcagaca |
1905481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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