View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18800_low_6 (Length: 337)

Name: NF18800_low_6
Description: NF18800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18800_low_6
NF18800_low_6
[»] chr1 (42 HSPs)
chr1 (185-325)||(5033736-5033877)
chr1 (17-87)||(5033880-5033950)
chr1 (132-197)||(5995445-5995510)
chr1 (132-197)||(48993914-48993979)
chr1 (79-204)||(29371379-29371516)
chr1 (139-207)||(36290490-36290558)
chr1 (131-198)||(48993992-48994059)
chr1 (131-197)||(32540823-32540889)
chr1 (131-207)||(29179672-29179748)
chr1 (132-195)||(15220887-15220950)
chr1 (131-198)||(37155042-37155109)
chr1 (131-197)||(9157307-9157373)
chr1 (131-197)||(17127639-17127705)
chr1 (131-197)||(21630039-21630105)
chr1 (132-206)||(29179585-29179659)
chr1 (132-197)||(17127561-17127626)
chr1 (132-197)||(33219649-33219714)
chr1 (131-195)||(28395636-28395700)
chr1 (131-198)||(5995365-5995432)
chr1 (131-198)||(46931993-46932060)
chr1 (131-197)||(1091619-1091685)
chr1 (94-197)||(46932023-46932122)
chr1 (132-197)||(49444910-49444975)
chr1 (131-195)||(44706859-44706923)
chr1 (131-187)||(45728294-45728350)
chr1 (80-131)||(47303470-47303521)
chr1 (89-131)||(48604968-48605010)
chr1 (94-130)||(5694965-5695001)
chr1 (80-204)||(4608986-4609122)
chr1 (132-187)||(32540755-32540810)
chr1 (131-198)||(46334021-46334079)
chr1 (131-208)||(48498401-48498478)
chr1 (132-167)||(38674532-38674567)
chr1 (132-206)||(4609072-4609137)
chr1 (65-115)||(5694887-5694937)
chr1 (73-131)||(8337857-8337914)
chr1 (73-123)||(48823890-48823940)
chr1 (132-197)||(46333952-46334008)
chr1 (132-168)||(2573181-2573217)
chr1 (73-121)||(28928784-28928832)
chr1 (72-131)||(37155121-37155181)
chr1 (131-167)||(38674578-38674614)
[»] chr8 (24 HSPs)
chr8 (131-205)||(43844544-43844618)
chr8 (132-206)||(5033237-5033311)
chr8 (131-198)||(5033157-5033224)
chr8 (132-197)||(33841588-33841653)
chr8 (132-197)||(35440966-35441031)
chr8 (133-197)||(5667094-5667158)
chr8 (131-198)||(33841666-33841733)
chr8 (131-198)||(35441044-35441111)
chr8 (131-206)||(8796410-8796485)
chr8 (131-198)||(45191202-45191269)
chr8 (132-198)||(5667173-5667239)
chr8 (132-190)||(10086833-10086891)
chr8 (131-198)||(2581821-2581888)
chr8 (131-198)||(8243463-8243530)
chr8 (131-198)||(10086753-10086820)
chr8 (131-198)||(22649841-22649908)
chr8 (80-204)||(34229631-34229767)
chr8 (135-197)||(45191124-45191186)
chr8 (132-197)||(4958675-4958739)
chr8 (132-204)||(6296681-6296753)
chr8 (132-206)||(39851031-39851105)
chr8 (132-191)||(8796498-8796557)
chr8 (143-197)||(1880236-1880289)
chr8 (131-167)||(6296632-6296668)
[»] chr5 (27 HSPs)
chr5 (132-197)||(16971220-16971285)
chr5 (132-197)||(2953266-2953331)
chr5 (132-197)||(3899915-3899980)
chr5 (132-197)||(19655234-19655299)
chr5 (132-197)||(29699443-29699508)
chr5 (138-195)||(30117827-30117884)
chr5 (131-198)||(19655154-19655221)
chr5 (133-198)||(291093-291158)
chr5 (132-197)||(291173-291238)
chr5 (131-204)||(1638447-1638520)
chr5 (132-197)||(2093934-2093999)
chr5 (131-195)||(30117903-30117967)
chr5 (135-206)||(2356351-2356421)
chr5 (132-191)||(12913879-12913938)
chr5 (73-129)||(28818922-28818978)
chr5 (131-198)||(19598328-19598395)
chr5 (131-197)||(12913800-12913866)
chr5 (131-204)||(16439128-16439201)
chr5 (132-180)||(7009404-7009452)
chr5 (137-197)||(13312261-13312321)
chr5 (147-195)||(22082997-22083045)
chr5 (132-195)||(28818993-28819056)
chr5 (131-166)||(38134448-38134483)
chr5 (131-205)||(3180135-3180208)
chr5 (73-130)||(16802449-16802506)
chr5 (131-180)||(29699381-29699430)
chr5 (67-123)||(16439221-16439277)
[»] chr3 (28 HSPs)
chr3 (132-197)||(45103106-45103171)
chr3 (131-195)||(47492122-47492186)
chr3 (131-198)||(51046148-51046215)
chr3 (132-197)||(1801443-1801508)
chr3 (131-198)||(41752960-41753027)
chr3 (131-197)||(33689173-33689239)
chr3 (132-205)||(30734391-30734464)
chr3 (132-197)||(41753040-41753105)
chr3 (131-195)||(43139784-43139848)
chr3 (67-130)||(29031790-29031853)
chr3 (139-197)||(30580753-30580811)
chr3 (131-197)||(30734477-30734543)
chr3 (73-128)||(49414501-49414556)
chr3 (132-195)||(51046072-51046135)
chr3 (73-131)||(49418696-49418754)
chr3 (66-123)||(29031712-29031769)
chr3 (132-197)||(50524778-50524843)
chr3 (140-196)||(7977584-7977640)
chr3 (67-123)||(18321734-18321790)
chr3 (132-180)||(47492061-47492109)
chr3 (131-190)||(30580831-30580890)
chr3 (67-130)||(47677331-47677394)
chr3 (131-205)||(50549964-50550038)
chr3 (131-204)||(18321641-18321714)
chr3 (147-204)||(55223222-55223279)
chr3 (66-123)||(55223315-55223372)
chr3 (74-130)||(1801571-1801627)
chr3 (81-129)||(39385765-39385813)
[»] chr2 (27 HSPs)
chr2 (132-197)||(6722027-6722092)
chr2 (132-197)||(16514500-16514565)
chr2 (132-196)||(6217222-6217286)
chr2 (132-204)||(14470582-14470654)
chr2 (133-192)||(9173058-9173117)
chr2 (135-209)||(32545867-32545941)
chr2 (132-190)||(33018621-33018679)
chr2 (132-206)||(38933663-38933737)
chr2 (132-197)||(24115996-24116061)
chr2 (132-197)||(37961782-37961847)
chr2 (139-195)||(14892343-14892399)
chr2 (131-198)||(16514420-16514487)
chr2 (131-198)||(29508766-29508833)
chr2 (132-197)||(29508687-29508753)
chr2 (131-180)||(6721965-6722014)
chr2 (132-192)||(14229355-14229415)
chr2 (67-131)||(14464554-14464618)
chr2 (70-123)||(2893965-2894018)
chr2 (131-180)||(15011294-15011343)
chr2 (148-197)||(45213892-45213941)
chr2 (74-130)||(6217300-6217356)
chr2 (169-197)||(14229456-14229484)
chr2 (132-168)||(15011356-15011392)
chr2 (67-123)||(15011363-15011419)
chr2 (69-105)||(32545778-32545814)
chr2 (132-168)||(37762027-37762063)
chr2 (131-167)||(38933614-38933650)
[»] chr7 (21 HSPs)
chr7 (132-207)||(11016945-11017020)
chr7 (132-197)||(42628371-42628436)
chr7 (131-198)||(11016865-11016932)
chr7 (135-198)||(41018307-41018370)
chr7 (132-207)||(4290621-4290696)
chr7 (135-198)||(45231929-45231992)
chr7 (132-198)||(48000690-48000756)
chr7 (131-208)||(38975791-38975868)
chr7 (131-198)||(4290541-4290608)
chr7 (131-198)||(34854770-34854837)
chr7 (138-197)||(48000819-48000878)
chr7 (131-198)||(15027538-15027605)
chr7 (132-175)||(15027618-15027661)
chr7 (131-197)||(27028725-27028791)
chr7 (132-197)||(41945931-41945996)
chr7 (131-175)||(22764775-22764819)
chr7 (70-123)||(34854697-34854750)
chr7 (132-197)||(38975881-38975946)
chr7 (80-120)||(4649408-4649448)
chr7 (94-130)||(27028869-27028905)
chr7 (74-130)||(29053390-29053446)
[»] chr4 (34 HSPs)
chr4 (132-195)||(47661918-47661981)
chr4 (132-197)||(42375086-42375151)
chr4 (132-195)||(23444268-23444331)
chr4 (131-198)||(30861849-30861916)
chr4 (131-198)||(51265441-51265508)
chr4 (132-197)||(51265521-51265586)
chr4 (131-195)||(23444344-23444408)
chr4 (131-198)||(6271698-6271765)
chr4 (131-197)||(3862621-3862687)
chr4 (131-197)||(3871378-3871444)
chr4 (132-197)||(6271778-6271843)
chr4 (84-197)||(26186032-26186155)
chr4 (139-195)||(44380013-44380069)
chr4 (132-191)||(35682242-35682301)
chr4 (132-191)||(53954686-53954745)
chr4 (142-197)||(30709986-30710041)
chr4 (131-197)||(35682163-35682229)
chr4 (73-123)||(47404590-47404640)
chr4 (62-123)||(47404668-47404729)
chr4 (138-202)||(47762600-47762664)
chr4 (67-123)||(55089995-55090051)
chr4 (67-123)||(55090079-55090135)
chr4 (132-167)||(40789255-40789290)
chr4 (140-175)||(53937919-53937954)
chr4 (132-198)||(38714899-38714965)
chr4 (68-130)||(40789179-40789241)
chr4 (73-123)||(50384110-50384160)
chr4 (74-123)||(42375016-42375065)
chr4 (131-180)||(47661856-47661905)
chr4 (74-123)||(53954616-53954665)
chr4 (169-205)||(24006166-24006202)
chr4 (67-131)||(28693922-28693986)
chr4 (135-167)||(31430488-31430520)
chr4 (79-123)||(55089888-55089932)
[»] scaffold0016 (2 HSPs)
scaffold0016 (132-206)||(49691-49765)
scaffold0016 (74-123)||(49786-49835)
[»] scaffold0161 (2 HSPs)
scaffold0161 (132-197)||(27217-27282)
scaffold0161 (135-198)||(27299-27362)
[»] chr6 (13 HSPs)
chr6 (131-197)||(24587458-24587524)
chr6 (132-197)||(7384485-7384550)
chr6 (70-195)||(551167-551304)
chr6 (132-198)||(24975748-24975814)
chr6 (135-197)||(24618598-24618660)
chr6 (132-188)||(12343176-12343232)
chr6 (133-204)||(17750893-17750963)
chr6 (65-123)||(10521846-10521904)
chr6 (132-197)||(17750978-17751043)
chr6 (132-195)||(13043533-13043596)
chr6 (131-161)||(24618676-24618706)
chr6 (166-198)||(12343105-12343137)
chr6 (131-167)||(31654332-31654368)
[»] scaffold0586 (2 HSPs)
scaffold0586 (132-191)||(7050-7109)
scaffold0586 (131-197)||(7122-7187)
[»] scaffold0180 (1 HSPs)
scaffold0180 (132-191)||(19125-19184)
[»] scaffold0481 (1 HSPs)
scaffold0481 (132-167)||(2914-2949)
[»] scaffold0047 (1 HSPs)
scaffold0047 (74-130)||(63763-63819)


Alignment Details
Target: chr1 (Bit Score: 114; Significance: 9e-58; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 5033877 - 5033736
Alignment:
Q  185 atgtcacccaagtactatccgtatcaagaacctagtaccaattcgttagaaatatatttttgcaataaaatattaatcaaatctaagaacattcaaaaac 284  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5033877 atgtcacccaagtgctacccgtatcaagaacctagtaccaattcgatagaaatatatttttacaataaaatattaatcaaatctaagaacattcaaaaac 5033778  T
Q  285 taatt-ttttccttccaagcaaacaaccaatgccacaggttc 325  Q
    ||||| |||||||||||||||||||||||||||| |||||||    
T  5033777 taatttttttccttccaagcaaacaaccaatgcctcaggttc 5033736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 5033950 - 5033880
Alignment:
Q  17 aaggagctcataaccacctttaattgaataaacatcattggtatcaagtcggataacactttggtgacata 87  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||    
T  5033950 aaggagctcataaccacctttaattgaataaacatcattggtattaagtcggatagcacttgggtgacata 5033880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 5995445 - 5995510
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  5995445 cacaagcattgtggcattgtgattggtcaatgtcaccaatgtcatccaactctatgtcacccaagt 5995510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 48993979 - 48993914
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||    
T  48993979 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 48993914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 29371379 - 29371516
Alignment:
Q  79 ggtgacataaagttaggtgacattggtcaattacaatgtcacaatatttgtga------------cacaagcattgtgacattgtgattggtcaatatca 166  Q
    ||||||||| |||||||||||||||| |||| ||||||||||||| ||||||             |||||||||||||||||||||||||||||||||||    
T  29371379 ggtgacatagagttaggtgacattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatatca 29371478  T
Q  167 ctaatgtcatccaactctatgtcacccaagtactatcc 204  Q
    | ||||||| | | ||||||||||| ||||| ||||||    
T  29371479 ccaatgtcacctagctctatgtcacacaagtgctatcc 29371516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 36290490 - 36290558
Alignment:
Q  139 attgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatccgta 207  Q
    ||||||||||||||||||||||||  ||| ||||||| |||||||||||||||||||||||||||||||    
T  36290490 attgtgacattgtgattggtcaatgccaccaatgtcacccaactctatgtcacccaagtactatccgta 36290558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 48993992 - 48994059
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||||||||||| ||||||||||||||||| |||| ||||||| ||||||||||||||||||||||    
T  48993992 acacaagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagta 48994059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 32540823 - 32540889
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||||| |||||||||||||||||| |||| |||||||||||| ||||||||||||||||    
T  32540823 acacaagcattgtaacattgtgattggtcaatgtcaccaatgtcatccaattctatgtcacccaagt 32540889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 29179672 - 29179748
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatccgta 207  Q
    |||||||||||||| |||||||||||| |||| |||| ||||||| |||||||||||||||||||||| | ||||||    
T  29179672 acacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttccgta 29179748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 15220887 - 15220950
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaa 195  Q
    |||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||    
T  15220887 cacaagcattgtgagattgtgattggccaatatcaccaatgtcacccaactctatgtcacccaa 15220950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 37155109 - 37155042
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    ||||||||||||||||||||||||||| |||| |||| ||||||| | ||||||||||||||||||||    
T  37155109 acacaagcattgtgacattgtgattggccaatgtcaccaatgtcaccaaactctatgtcacccaagta 37155042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 9157373 - 9157307
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    |||||||||||||||||||||||||||||||| | || ||||||| ||||||||||||||| |||||    
T  9157373 acacaagcattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagt 9157307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 17127639 - 17127705
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||||||||||| |||||||||||| |||||||||||| | |||||||| ||||||||||    
T  17127639 acacaagcattgtgacattttgattggtcaatgtcactaatgtcacctaactctatatcacccaagt 17127705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 21630105 - 21630039
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    |||||||||||||||||||||||||||||||| |||| ||||||| |||||| |||||||| |||||    
T  21630105 acacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactttatgtcacgcaagt 21630039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 29179659 - 29179585
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatccgt 206  Q
    ||||||||||||||||||||||||||||| | |||| ||||||| |||||||||||||| |||||| ||| ||||    
T  29179659 cacaagcattgtgacattgtgattggtcagtgtcaccaatgtcacccaactctatgtcatccaagtgctacccgt 29179585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 17127626 - 17127561
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||||||||||||||||||||||| |||||||||||| | |||||||| |||| |||||    
T  17127626 cacaagcattgtgacattgtgattggtcaatgtcactaatgtcacctaactctatatcacacaagt 17127561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 33219649 - 33219714
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    |||||||||| |||||||||||||| ||||| |||| |||||||||||||||||||| ||||||||    
T  33219649 cacaagcattatgacattgtgattgatcaatgtcaccaatgtcatccaactctatgttacccaagt 33219714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 28395700 - 28395636
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaa 195  Q
    |||||||||||||||||||||||||||||||| |||| |||||||  ||||||||||| ||||||    
T  28395700 acacaagcattgtgacattgtgattggtcaatgtcaccaatgtcactcaactctatgttacccaa 28395636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 5995432 - 5995365
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||||||||||| |||||||||||| |||| | || ||||||||| ||||||||||||||||||||    
T  5995432 acacaagcattgtggcattgtgattggccaatgttaccaatgtcatcaaactctatgtcacccaagta 5995365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 46932060 - 46931993
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||| ||||||| |||||||||||| |||| |||| ||||||| ||||||||||||||||||||||    
T  46932060 acacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagta 46931993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 1091619 - 1091685
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    |||||| ||||||||||||||||||||||||  |||| ||| ||| |||||||||||||||||||||    
T  1091619 acacaaacattgtgacattgtgattggtcaaagtcaccaatatcacccaactctatgtcacccaagt 1091685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 46932023 - 46932122
Alignment:
Q  94 ggtgacattggtcaattacaatgtcacaatatttgtgacacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcaccc 193  Q
    ||||||||||| |||| |||||| |||||| ||||||  |    ||||||| ||||||||||||||||| |||| ||||||| |||||||||||||||||    
T  46932023 ggtgacattggccaatcacaatgccacaatgtttgtgttaa---cattgtggcattgtgattggtcaatgtcaccaatgtca-ccaactctatgtcaccc 46932118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 49444975 - 49444910
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    |||||||||||| |||||||||||| || || |||| ||||||| |||||||||||||||||||||    
T  49444975 cacaagcattgtaacattgtgattgatcgatgtcaccaatgtcacccaactctatgtcacccaagt 49444910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 44706859 - 44706923
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaa 195  Q
    |||||||||||| | |||||||||||| |||| |||| ||||||| |||||||||||||||||||    
T  44706859 acacaagcattgcggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaa 44706923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 45728350 - 45728294
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatg 187  Q
    ||||||||||||||| ||||||||||||||||||||| ||| ||| |||||||||||    
T  45728350 acacaagcattgtgatattgtgattggtcaatatcaccaatatcacccaactctatg 45728294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 47303521 - 47303470
Alignment:
Q  80 gtgacataaagttaggtgacattggtcaattacaatgtcacaatatttgtga 131  Q
    |||||||| ||||||||||||||||||||| ||||||||||||| |||||||    
T  47303521 gtgacatagagttaggtgacattggtcaatcacaatgtcacaatgtttgtga 47303470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 131
Target Start/End: Original strand, 48604968 - 48605010
Alignment:
Q  89 agttaggtgacattggtcaattacaatgtcacaatatttgtga 131  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  48604968 agttaggtgacattggtcaatcacaatgtcacaatatttgtga 48605010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 5695001 - 5694965
Alignment:
Q  94 ggtgacattggtcaattacaatgtcacaatatttgtg 130  Q
    |||||||||||||||||||||||||||||||||||||    
T  5695001 ggtgacattggtcaattacaatgtcacaatatttgtg 5694965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 204
Target Start/End: Complemental strand, 4609122 - 4608986
Alignment:
Q  80 gtgacataaagttaggtgacattggtcaattacaatgtcacaatatttgtga------------cacaagcattgtgacattgtgattggtcaatatcac 167  Q
    |||||||| |||| |||||||||||||||| |||||||||||||  ||||||            ||||| ||||||||||||||||| ||||||| ||||    
T  4609122 gtgacatagagttgggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgatgggtcaatgtcac 4609023  T
Q  168 taatgtcatccaactctatgtcacccaagtactatcc 204  Q
      |||||| ||||||| || |||| ||||| ||||||    
T  4609022 cgatgtcacccaactccatatcacacaagtgctatcc 4608986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 32540810 - 32540755
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatg 187  Q
    |||||||||||||||||||||||||| ||||  ||| ||||||| |||||||||||    
T  32540810 cacaagcattgtgacattgtgattggccaatgccaccaatgtcacccaactctatg 32540755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 46334021 - 46334079
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  46334021 acacaagcattgtgacattgtgattggtc---------aatgtcatccaactctatgtcacccaagta 46334079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 48498478 - 48498401
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatccgtat 208  Q
    |||||| |||||||  ||| ||||||  |||| |||| ||||||| |||||||||||||||||||||| | |||||||    
T  48498478 acacaaacattgtggtattatgattgaccaatgtcacaaatgtcacccaactctatgtcacccaagtattttccgtat 48498401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 167
Target Start/End: Complemental strand, 38674567 - 38674532
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcac 167  Q
    |||||||||||||||||||||||||| |||||||||    
T  38674567 cacaagcattgtgacattgtgattggccaatatcac 38674532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 4609072 - 4609137
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatccgt 206  Q
    |||||||||||||||||||||||||         || ||||||| ||||||||||||||| ||||||||||||||    
T  4609072 cacaagcattgtgacattgtgattg---------accaatgtcacccaactctatgtcacacaagtactatccgt 4609137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 5694887 - 5694937
Alignment:
Q  65 tcggataacactttggtgacataaagttaggtgacattggtcaattacaat 115  Q
    |||||||||||||  |||||||| |||| |||||||||||||||| |||||    
T  5694887 tcggataacacttgagtgacatagagtttggtgacattggtcaatcacaat 5694937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 8337857 - 8337914
Alignment:
Q  73 cactttggtgacataaagttaggtgacattggtcaattacaatgtcacaatatttgtga 131  Q
    ||||| ||||| ||| |||| |||||||||||||||| ||||||||||||| |||||||    
T  8337857 cacttaggtgatatagagtt-ggtgacattggtcaatcacaatgtcacaatgtttgtga 8337914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 48823890 - 48823940
Alignment:
Q  73 cactttggtgacataaagttaggtgacattggtcaattacaatgtcacaat 123  Q
    ||||| ||||||||| |||| ||||||||||| |||| |||||||||||||    
T  48823890 cacttgggtgacatagagttgggtgacattggccaatcacaatgtcacaat 48823940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 46334008 - 46333952
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    |||||||||||||||||||||||||| ||||         ||||||||||||||||||||||||||    
T  46334008 cacaagcattgtgacattgtgattggccaat---------gtcatccaactctatgtcacccaagt 46333952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 2573217 - 2573181
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcact 168  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  2573217 cacaagcattgtgatattgtgattagtcaatatcact 2573181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 28928784 - 28928832
Alignment:
Q  73 cactttggtgacataaagttaggtgacattggtcaattacaatgtcaca 121  Q
    ||||| ||||||||| |||| ||||||||||| |||| |||||||||||    
T  28928784 cacttgggtgacatagagtttggtgacattggccaatcacaatgtcaca 28928832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 37155181 - 37155121
Alignment:
Q  72 acactttggtgaca-taaagttaggtgacattggtcaattacaatgtcacaatatttgtga 131  Q
    |||||| ||||||| || |||| ||||||||||| |||| |||||||||||||| ||||||    
T  37155181 acacttgggtgacaatagagttgggtgacattggccaatcacaatgtcacaatacttgtga 37155121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 38674578 - 38674614
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcac 167  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  38674578 acacaagcattgtgacattatgattggccaatatcac 38674614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 43844544 - 43844618
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatccg 205  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| | |||||||    
T  43844544 acacaagcattgtgacattgtgattgatcaatatcaccaatgtcatccaactctatgtcacccaattgctatccg 43844618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 5033237 - 5033311
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatccgt 206  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||| ||| ||||    
T  5033237 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctacccgt 5033311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 5033224 - 5033157
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||||||||||| ||||||||||||||||| |||| ||||||| ||||||||||||||||||||||    
T  5033224 acacaagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagta 5033157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 33841653 - 33841588
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    |||||||||||||||| |||||||||||||| |||| ||||||| |||||||||||||||||||||    
T  33841653 cacaagcattgtgacaatgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 33841588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 35441031 - 35440966
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| |||||||||||    
T  35441031 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagt 35440966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 5667158 - 5667094
Alignment:
Q  133 acaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||||||||||||||||  |||| |||| |||||||||||||||||||||||||||||    
T  5667158 acaagcattgtgacattgtgattgaccaatgtcaccaatgtcatccaactctatgtcacccaagt 5667094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 33841666 - 33841733
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||||||||||| |||| |||||||||||| |||| ||||||| ||||||||||||||||||||||    
T  33841666 acacaagcattgtggcattctgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagta 33841733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 35441044 - 35441111
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||||||||||| |||||||||||| |||| |||| ||||||| ||||||||||||||||||||||    
T  35441044 acacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagta 35441111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 8796485 - 8796410
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatccgt 206  Q
    ||||||||||||||||||||||||||  ||||||||| ||| ||| | |||||||||||||||||||  |||||||    
T  8796485 acacaagcattgtgacattgtgattgaccaatatcacaaatatcacctaactctatgtcacccaagtgttatccgt 8796410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 45191202 - 45191269
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||| |||||| ||||| |||||||||||| |||| ||| ||||||||||||||||||||||||||    
T  45191202 acacaaacattgtaacattttgattggtcaatgtcaccaatatcatccaactctatgtcacccaagta 45191269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 5667173 - 5667239
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||||||| ||||||||| ||||| |||| |||| ||||||||| ||||||||||||||||||||    
T  5667173 cacaagcattatgacattgtaattggccaatgtcaccaatgtcatcaaactctatgtcacccaagta 5667239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 10086833 - 10086891
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtca 190  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||| ||||||||||||||    
T  10086833 cacaaacattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtca 10086891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 2581888 - 2581821
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||||||||||| |||||||||||| |||| |||  ||||||| |||| |||||||||||||||||    
T  2581888 acacaagcattgtggcattgtgattggccaatgtcaacaatgtcacccaattctatgtcacccaagta 2581821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 8243463 - 8243530
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||||||||||| |||||||||||  |||  |||| ||||||| ||||||||||||||||||||||    
T  8243463 acacaagcattgtggcattgtgattgaccaacgtcaccaatgtcacccaactctatgtcacccaagta 8243530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 10086820 - 10086753
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||| |||| ||||||||||||||  |||| |||||||||||| |||| |||||||||||||||||    
T  10086820 acacaaacattatgacattgtgattgaccaatgtcactaatgtcacccaattctatgtcacccaagta 10086753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 22649908 - 22649841
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||||||||||| |||||||||| | |||| |||| |||||||  |||||||||||||||||||||    
T  22649908 acacaagcattgtggcattgtgattagccaatgtcaccaatgtcactcaactctatgtcacccaagta 22649841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 204
Target Start/End: Complemental strand, 34229767 - 34229631
Alignment:
Q  80 gtgacataaagttaggtgacattggtcaattacaatgtcacaatatttgtga------------cacaagcattgtgacattgtgattggtcaatatcac 167  Q
    |||||||| ||||||||||||||||||||| ||||| |||||||  ||||||            |||||||||| ||||||||||||||    || ||||    
T  34229767 gtgacatagagttaggtgacattggtcaatcacaatatcacaatgcttgtgaaagagagagaaacacaagcattctgacattgtgattgactcatgtcac 34229668  T
Q  168 taatgtcatccaactctatgtcacccaagtactatcc 204  Q
    |||||||| ||||||||||||||| ||||| ||||||    
T  34229667 taatgtcacccaactctatgtcacacaagtgctatcc 34229631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 45191186 - 45191124
Alignment:
Q  135 aagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    |||||||||| ||||||||||  ||||| |||| ||| |||||||||||||||||||||||||    
T  45191186 aagcattgtggcattgtgattaatcaatgtcaccaatatcatccaactctatgtcacccaagt 45191124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 4958675 - 4958739
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    |||||| |||||||| ||||||||||||||| |||||||| ||||| ||||||||||||| |||||    
T  4958675 cacaagtattgtgac-ttgtgattggtcaatgtcactaatatcatctaactctatgtcacgcaagt 4958739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 6296681 - 6296753
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatcc 204  Q
    |||||| ||||||||||| | ||||   ||| ||||||||||||||||||||||| |||||||| ||||||||    
T  6296681 cacaagtattgtgacattataattgactaatgtcactaatgtcatccaactctatatcacccaaatactatcc 6296753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 39851031 - 39851105
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatccgt 206  Q
    |||||||||| | | |||||||||||||||| |||| |||||||  ||||| ||||||| |||||| ||||||||    
T  39851031 cacaagcattataatattgtgattggtcaatgtcaccaatgtcactcaactttatgtcatccaagtgctatccgt 39851105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 8796498 - 8796557
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcac 191  Q
    |||||||||||||||||| |||||||||||| |||| ||| ||| | | |||||||||||    
T  8796498 cacaagcattgtgacattttgattggtcaatgtcaccaatatcacctagctctatgtcac 8796557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 1880289 - 1880236
Alignment:
Q  143 tgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    |||||||||||||||||||| |||| | ||||| |||| ||||||||||||||||    
T  1880289 tgacattgtgattggtcaatgtcaccagtgtca-ccaattctatgtcacccaagt 1880236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 6296668 - 6296632
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcac 167  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  6296668 acacaagcattatgacattgtgattggtcaatgtcac 6296632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 16971220 - 16971285
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||    
T  16971220 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 16971285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 2953266 - 2953331
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    |||||||||||||||||||||||||| |||| |||| ||||||| |||||||||||||||||||||    
T  2953266 cacaagcattgtgacattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 2953331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 3899915 - 3899980
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| |||||||||||    
T  3899915 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagt 3899980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 19655234 - 19655299
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    |||||||||||||||||||||||||| |||| |||| |||||||  ||||||||||||||||||||    
T  19655234 cacaagcattgtgacattgtgattggacaatgtcaccaatgtcactcaactctatgtcacccaagt 19655299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 29699443 - 29699508
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    |||||||||||||||||||||||||| |||| |||| ||| ||| |||||||||||||||||||||    
T  29699443 cacaagcattgtgacattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagt 29699508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 30117884 - 30117827
Alignment:
Q  138 cattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaa 195  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  30117884 cattgtgacattgtgattggtcaatatcaccaatgtcacccaactctatatcacccaa 30117827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 19655221 - 19655154
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||| ||||||| |||||||||||| |||| |||| ||||||| ||||||||||||||||||||||    
T  19655221 acacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagta 19655154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 291158 - 291093
Alignment:
Q  133 acaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||||||||| |||||||||||| |||| |||| ||||||| ||||||||||||||| ||||||    
T  291158 acaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcactcaagta 291093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 291173 - 291238
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||| ||||||||||||||||||| ||||| |||| ||||||| |||||||||| ||||||||||    
T  291173 cacaaacattgtgacattgtgattgatcaatgtcaccaatgtcacccaactctatatcacccaagt 291238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 1638520 - 1638447
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatcc 204  Q
    |||||| |||||||||||||||||||| ||||||||| ||| ||| |||||||||| ||||| |||| ||||||    
T  1638520 acacaaacattgtgacattgtgattggccaatatcacaaatatcacccaactctatatcacctaagtgctatcc 1638447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 2093999 - 2093934
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    |||||||||| |||||||||||||| ||||| |||| ||| ||| |||||||||||||||||||||    
T  2093999 cacaagcattatgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 2093934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 30117903 - 30117967
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaa 195  Q
    |||||||||||||| |||| ||||||  ||||||||| |||||||||||||||||||||| ||||    
T  30117903 acacaagcattgtggcattatgattgaccaatatcaccaatgtcatccaactctatgtcatccaa 30117967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 206
Target Start/End: Original strand, 2356351 - 2356421
Alignment:
Q  135 aagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatccgt 206  Q
    |||||||||||||| |||||||| |||| |||| ||||||||||||||||||||||| ||||| ||| ||||    
T  2356351 aagcattgtgacat-gtgattggccaatgtcaccaatgtcatccaactctatgtcacacaagtgctacccgt 2356421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 12913879 - 12913938
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcac 191  Q
    |||||||||| ||||||||||||||  ||||||||| ||||||| |||||||||||||||    
T  12913879 cacaagcattatgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 12913938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 28818922 - 28818978
Alignment:
Q  73 cactttggtgacataaagttaggtgacattggtcaattacaatgtcacaatatttgt 129  Q
    ||||| ||||||||| |||| |||||||||||||||| |||||||||||||| ||||    
T  28818922 cacttgggtgacatagagttgggtgacattggtcaatcacaatgtcacaatacttgt 28818978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 19598395 - 19598328
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    ||||||||||||||  ||||||||||  |||| |||| ||||| | ||||||||||||||||||||||    
T  19598395 acacaagcattgtggtattgtgattgaccaatgtcaccaatgttacccaactctatgtcacccaagta 19598328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 12913866 - 12913800
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||| ||||||||||||||||||| |||| |||| |||||||  ||||| |||||||| |||||    
T  12913866 acacaagaattgtgacattgtgattggccaatgtcaccaatgtcactcaactatatgtcacacaagt 12913800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 16439201 - 16439128
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatcc 204  Q
    ||||||||||||||||||||||||||  |||| |||| ||| | | |||||||||| ||| |||||| ||||||    
T  16439201 acacaagcattgtgacattgtgattgaccaatgtcaccaatattacccaactctatatcatccaagtgctatcc 16439128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 7009404 - 7009452
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaa 180  Q
    |||||||||||||| ||||||||||  ||||||||| ||||||||||||    
T  7009404 cacaagcattgtgatattgtgattgaccaatatcaccaatgtcatccaa 7009452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 13312321 - 13312261
Alignment:
Q  137 gcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    |||||||||||||||||||| ||||| |||  ||||||| | |||||||||||||| ||||    
T  13312321 gcattgtgacattgtgattgatcaatgtcatcaatgtcacctaactctatgtcacctaagt 13312261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 22083045 - 22082997
Alignment:
Q  147 attgtgattggtcaatatcactaatgtcatccaactctatgtcacccaa 195  Q
    |||||||||||||||| ||| ||||||||  ||||||||||||||||||    
T  22083045 attgtgattggtcaatgtcattaatgtcacacaactctatgtcacccaa 22082997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 28818993 - 28819056
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaa 195  Q
    |||||||||||||||||| ||||||  |||| |||| ||| |||  ||||||||||||||||||    
T  28818993 cacaagcattgtgacattatgattgaccaatgtcaccaatatcactcaactctatgtcacccaa 28819056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 166
Target Start/End: Original strand, 38134448 - 38134483
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatca 166  Q
    ||||||||||||||||||||||||||| ||||||||    
T  38134448 acacaagcattgtgacattgtgattggccaatatca 38134483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 3180135 - 3180208
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatccg 205  Q
    |||||||||||||| |||||||||||  |||| |||| ||||| | |||||||||||| || ||||| |||||||    
T  3180135 acacaagcattgtggcattgtgattgaccaatgtcaccaatgtta-ccaactctatgtgacacaagtgctatccg 3180208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 16802449 - 16802506
Alignment:
Q  73 cactttggtgacataaagttaggtgacattggtcaattacaatgtcacaatatttgtg 130  Q
    ||||| ||| ||||||| || ||||||||||| |||| ||||||| ||||||||||||    
T  16802449 cacttaggtaacataaatttgggtgacattggccaatcacaatgtaacaatatttgtg 16802506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 29699430 - 29699381
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaa 180  Q
    |||||||||||||| |||||||||||| |||| |||| ||||||| ||||    
T  29699430 acacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 29699381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 16439277 - 16439221
Alignment:
Q  67 ggataacactttggtgacataaagttaggtgacattggtcaattacaatgtcacaat 123  Q
    |||||||| ||  |||||||| |||| |||||||||| ||||| |||||||||||||    
T  16439277 ggataacatttgtgtgacatagagttgggtgacattgatcaatcacaatgtcacaat 16439221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 45103171 - 45103106
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||    
T  45103171 cacaagcattgtgacattgtgattgatcaatatcaccaatgtcacccaactctatgtcacccaagt 45103106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 47492122 - 47492186
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaa 195  Q
    ||||||||||||||||||||||||||| |||||| || ||||||| |||||||||||||||||||    
T  47492122 acacaagcattgtgacattgtgattggccaatatgaccaatgtcacccaactctatgtcacccaa 47492186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 51046148 - 51046215
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    ||||||||||| || |||||||||||| |||| |||| ||||||||||||||||||||||||||||||    
T  51046148 acacaagcattatggcattgtgattggccaatgtcaccaatgtcatccaactctatgtcacccaagta 51046215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 1801508 - 1801443
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||||| |||||||||||| |||| |||| ||||||| |||||||||||||||||||||    
T  1801508 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 1801443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 41753027 - 41752960
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||| ||||||| |||||||||||| |||| |||| ||||||| ||||||||||||||||||||||    
T  41753027 acacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagta 41752960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 33689239 - 33689173
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||||||||||||||||||  ||||||||  ||||||| ||||||||||||||| |||||    
T  33689239 acacaagcattgtgacattgtgattgaccaatatcatcaatgtcacccaactctatgtcacacaagt 33689173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 30734464 - 30734391
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatccg 205  Q
    ||||||||||||||||||||||| ||||||| |||  ||||||| | ||||||||||||| ||||| |||||||    
T  30734464 cacaagcattgtgacattgtgatcggtcaatgtcatcaatgtcaccaaactctatgtcacacaagttctatccg 30734391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 41753040 - 41753105
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||||| |||||||||||| |||| |||| |||||||  ||||||||||||||||||||    
T  41753040 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcactcaactctatgtcacccaagt 41753105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 43139784 - 43139848
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaa 195  Q
    |||||||||||||| |||||| ||||| |||| |||| ||||||| |||||||||||||||||||    
T  43139784 acacaagcattgtggcattgttattggccaatgtcaccaatgtcacccaactctatgtcacccaa 43139848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 29031853 - 29031790
Alignment:
Q  67 ggataacactttggtgacataaagttaggtgacattggtcaattacaatgtcacaatatttgtg 130  Q
    ||||| |||||  |||||||| |||||||||| |||||||||||||||||||||||| ||||||    
T  29031853 ggatagcacttgtgtgacatagagttaggtgatattggtcaattacaatgtcacaatgtttgtg 29031790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 30580811 - 30580753
Alignment:
Q  139 attgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||| ||||||||||||||||| ||||||| |||| |||||||||| |||||    
T  30580811 attgtgacattatgattggtcaatatcaccaatgtcacccaattctatgtcactcaagt 30580753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 30734477 - 30734543
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||| ||| ||||||||||||||| |||| |||| ||||||| | |||||||||||||||||||    
T  30734477 acacaagtattatgacattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 30734543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 49414556 - 49414501
Alignment:
Q  73 cactttggtgacataaagttaggtgacattggtcaattacaatgtcacaatatttg 128  Q
    ||||| ||||||||| |||| ||||||||||| |||||||||||||||||| ||||    
T  49414556 cacttgggtgacatagagttgggtgacattggccaattacaatgtcacaatgtttg 49414501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 51046135 - 51046072
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaa 195  Q
    ||||| |||||||||||| |||||| ||||| |||| ||| |||||||||||||||||| ||||    
T  51046135 cacaaacattgtgacattatgattgatcaatgtcaccaatatcatccaactctatgtcatccaa 51046072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 49418696 - 49418754
Alignment:
Q  73 cactttggtgacataaagttaggtgacattggtcaattacaatgtcacaatatttgtga 131  Q
    ||||| ||||||||| |||| ||||| |||||||||| ||||||||| |||||||||||    
T  49418696 cacttgggtgacatagagttgggtgatattggtcaatcacaatgtcataatatttgtga 49418754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 29031712 - 29031769
Alignment:
Q  66 cggataacactttggtgacataaagttaggtgacattggtcaattacaatgtcacaat 123  Q
    ||||||||||||   ||||||| |||||||||| |||||||||| |||||||||||||    
T  29031712 cggataacacttgcatgacatagagttaggtgatattggtcaatcacaatgtcacaat 29031769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 50524778 - 50524843
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||| || ||||||||||||   |||||||| |||||||  ||||||||||||||||||||    
T  50524778 cacaagcatcgtaacattgtgattgactaatatcaccaatgtcactcaactctatgtcacccaagt 50524843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 7977584 - 7977640
Alignment:
Q  140 ttgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaag 196  Q
    ||||||||||||| |||| ||||||||  ||||||||| || |||||||||||||||    
T  7977584 ttgtgacattgtggttggccaatatcatcaatgtcatcaaattctatgtcacccaag 7977640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 18321790 - 18321734
Alignment:
Q  67 ggataacactttggtgacataaagttaggtgacattggtcaattacaatgtcacaat 123  Q
    ||||||||||| | ||||||| |||| | |||||||||||||| |||||||||||||    
T  18321790 ggataacacttggatgacatagagttggatgacattggtcaatcacaatgtcacaat 18321734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 47492109 - 47492061
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaa 180  Q
    |||||||||||||||||||||||||| |||| |||| ||||||| ||||    
T  47492109 cacaagcattgtgacattgtgattggccaatgtcaccaatgtcacccaa 47492061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 30580831 - 30580890
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtca 190  Q
    ||||||||| ||||||||||||||||  |||| |||| ||||||| |||| |||||||||    
T  30580831 acacaagcactgtgacattgtgattgaccaatgtcacaaatgtcacccaattctatgtca 30580890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 47677394 - 47677331
Alignment:
Q  67 ggataacactttggtgacataaagttaggtgacattggtcaattacaatgtcacaatatttgtg 130  Q
    ||||| |||||  |||||||| |||| |||||||||| ||||| ||||||||||||| ||||||    
T  47677394 ggatagcacttgtgtgacatagagttgggtgacattgatcaatcacaatgtcacaatgtttgtg 47677331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 50550038 - 50549964
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatccg 205  Q
    ||||||||||||| | |||||||||||||||| |||| ||| ||| ||| || ||| |||| |||||| ||||||    
T  50550038 acacaagcattgtaatattgtgattggtcaatgtcaccaatatcacccagctttatatcactcaagtattatccg 50549964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 18321714 - 18321641
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatcc 204  Q
    |||||| | |||||||||||||||||  |||| |||| ||| ||| ||||||||||||  ||||||| ||||||    
T  18321714 acacaaactttgtgacattgtgattgaccaatgtcaccaatatcacccaactctatgttgcccaagtgctatcc 18321641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 55223279 - 55223222
Alignment:
Q  147 attgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatcc 204  Q
    ||||||||||  ||||||||| ||||||| | ||||||||||||| ||||| ||||||    
T  55223279 attgtgattgaccaatatcaccaatgtcacctaactctatgtcacacaagtgctatcc 55223222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 55223372 - 55223315
Alignment:
Q  66 cggataacactttggtgacataaagttaggtgacattggtcaattacaatgtcacaat 123  Q
    |||||| ||||| ||||||||| ||||| |||| |||||||||| | |||||||||||    
T  55223372 cggatagcacttgggtgacatagagttaagtgatattggtcaatcataatgtcacaat 55223315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 1801627 - 1801571
Alignment:
Q  74 actttggtgacataaagttaggtgacattggtcaattacaatgtcacaatatttgtg 130  Q
    |||| ||||||||| |||| ||||||||||| |||| |||||| |||||| ||||||    
T  1801627 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgtttgtg 1801571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 39385813 - 39385765
Alignment:
Q  81 tgacataaagttaggtgacattggtcaattacaatgtcacaatatttgt 129  Q
    ||||||| |||| ||||||||||| |||| ||||||| |||||||||||    
T  39385813 tgacatagagttgggtgacattggccaatcacaatgttacaatatttgt 39385765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 6722027 - 6722092
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  6722027 cacaaacattgtgacattgtgattggccaatatcactaatgtcaaccaactctatgtcacccaagt 6722092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 16514500 - 16514565
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||||||||||    
T  16514500 cacaagcattgtgacattgtgattggtcaatgtcaccaatctcacccaactctatgtcacccaagt 16514565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 6217286 - 6217222
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaag 196  Q
    ||||||||||||| |||||||||||| |||| |||| ||||||| ||||||||||||||||||||    
T  6217286 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaag 6217222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 14470654 - 14470582
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatcc 204  Q
    |||||||||||  |||||||||||||||||| |||| ||||||| ||||||||||||||| ||||| ||||||    
T  14470654 cacaagcattgcaacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacacaagtgctatcc 14470582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 9173058 - 9173117
Alignment:
Q  133 acaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacc 192  Q
    |||||||||||| |||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  9173058 acaagcattgtggcattgtgattggccaatatcaccaatgtcacccaactctatgtcacc 9173117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 32545867 - 32545941
Alignment:
Q  135 aagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatccgtatc 209  Q
    ||||||||||||||| ||||||| |||| |||| |||||||   ||||||||||||||||||| |||||||||||    
T  32545867 aagcattgtgacattatgattggccaatgtcaccaatgtcactaaactctatgtcacccaagtgctatccgtatc 32545941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 33018621 - 33018679
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtca 190  Q
    |||||||||||||||||||||||||  ||||||||| ||||||| ||||||||||||||    
T  33018621 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtca 33018679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 38933663 - 38933737
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatccgt 206  Q
    |||||||||||||||||| ||||||| |||  |||| ||||||| ||||||||||||||||||||| ||| ||||    
T  38933663 cacaagcattgtgacattatgattggccaacgtcaccaatgtcacccaactctatgtcacccaagtgctacccgt 38933737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 24115996 - 24116061
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||| |||||||||||||  |||||||||||||| || ||||||||||||||| |||||    
T  24115996 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 24116061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 37961782 - 37961847
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||||| ||||||||||||||||| |||| ||| |||  ||||||||||||||||||||    
T  37961782 cacaagcattgtggcattgtgattggtcaatgtcacaaatatcactcaactctatgtcacccaagt 37961847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 14892343 - 14892399
Alignment:
Q  139 attgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaa 195  Q
    ||||| |||||||||||| ||||| |||| |||||||||||||||||||||||||||    
T  14892343 attgtaacattgtgattgatcaatgtcaccaatgtcatccaactctatgtcacccaa 14892399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 16514487 - 16514420
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    ||||||||||| || ||| |||||||| |||| |||| ||||||| ||||||||||||||||||||||    
T  16514487 acacaagcattatggcatagtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagta 16514420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 29508766 - 29508833
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||||||||| | |||||||||||| |||| |||| ||| ||| ||||||||||||||||||||||    
T  29508766 acacaagcattgcggcattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagta 29508833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 29508753 - 29508687
Alignment:
Q  132 cacaagcattgtgacatt-gtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||||| |||| ||||||||||||| |||| ||||||| |||||||||||||||| ||||    
T  29508753 cacaagcattgtggcatttgtgattggtcaatgtcaccaatgtcacccaactctatgtcacctaagt 29508687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 6722014 - 6721965
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaa 180  Q
    ||||||||||||||| |||||||||||||||| |||| ||||||||||||    
T  6722014 acacaagcattgtgatattgtgattggtcaatgtcaccaatgtcatccaa 6721965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 14229415 - 14229355
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacc 192  Q
    |||||||||||||||||||||||||  |||| |||| ||||||| | ||||||||||||||    
T  14229415 cacaagcattgtgacattgtgattgaccaatgtcaccaatgtcaccgaactctatgtcacc 14229355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 14464554 - 14464618
Alignment:
Q  67 ggataacactttggtgacataaagttaggtgacattggtcaattacaatgtcacaatatttgtga 131  Q
    ||||| |||||  |||||||| ||||  ||||||||||||||| |||||||||||||| ||||||    
T  14464554 ggatagcacttgtgtgacatagagttgagtgacattggtcaatcacaatgtcacaatacttgtga 14464618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 2893965 - 2894018
Alignment:
Q  70 taacactttggtgacataaagttaggtgacattggtcaattacaatgtcacaat 123  Q
    |||||||| ||||||||| |||| ||||||||||| |||| ||||| |||||||    
T  2893965 taacacttgggtgacatagagttgggtgacattggccaatcacaatctcacaat 2894018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 15011343 - 15011294
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaa 180  Q
    |||||| ||||||| |||||||||||| ||||||||| ||||||| ||||    
T  15011343 acacaaacattgtggcattgtgattggccaatatcaccaatgtcacccaa 15011294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 45213892 - 45213941
Alignment:
Q  148 ttgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||||||| |||  ||||||| ||||||||||||||| |||||    
T  45213892 ttgtgattggtcaatgtcatcaatgtcacccaactctatgtcacacaagt 45213941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 6217356 - 6217300
Alignment:
Q  74 actttggtgacataaagttaggtgacattggtcaattacaatgtcacaatatttgtg 130  Q
    |||| ||||||||| |||| ||||||||||| |||| |||||| |||||| ||||||    
T  6217356 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgtttgtg 6217300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 197
Target Start/End: Original strand, 14229456 - 14229484
Alignment:
Q  169 aatgtcatccaactctatgtcacccaagt 197  Q
    |||||||||||||||||||||||||||||    
T  14229456 aatgtcatccaactctatgtcacccaagt 14229484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 15011356 - 15011392
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcact 168  Q
    |||||||||||||||||||||||||| |||| |||||    
T  15011356 cacaagcattgtgacattgtgattggccaatgtcact 15011392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 15011419 - 15011363
Alignment:
Q  67 ggataacactttggtgacataaagttaggtgacattggtcaattacaatgtcacaat 123  Q
    |||||| |||| ||||||||| ||||  |||||||||| |||| |||||||||||||    
T  15011419 ggataatacttgggtgacatagagttgagtgacattggccaatcacaatgtcacaat 15011363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 32545778 - 32545814
Alignment:
Q  69 ataacactttggtgacataaagttaggtgacattggt 105  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  32545778 ataacacttaggtgacatagagttaggtgacattggt 32545814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 37762063 - 37762027
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcact 168  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  37762063 cacaagcattgcgacattgtgattggtcaatgtcact 37762027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 38933650 - 38933614
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcac 167  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  38933650 acacaagcattgtggcattgtgattggtcaatgtcac 38933614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 11016945 - 11017020
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatccgta 207  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||| ||| |||||    
T  11016945 cacaaacattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctacccgta 11017020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 42628371 - 42628436
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||| |||||||||||||| ||||||||| ||||||| |||||||||||||||||||||    
T  42628371 cacaagcattgggacattgtgattggccaatatcaccaatgtcacccaactctatgtcacccaagt 42628436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 11016932 - 11016865
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||||||||||| |||||||||||| |||| |||| ||||||| ||||||||||||||||||||||    
T  11016932 acacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagta 11016865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 41018307 - 41018370
Alignment:
Q  135 aagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||||||| ||||||||||||||||| |||| ||||||| ||||||||||||||||||||||    
T  41018307 aagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagta 41018370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 4290621 - 4290696
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatccgta 207  Q
    |||||| ||||||||||||||||||| |||| |||| ||||||| |||||| |||||||||||||| ||| |||||    
T  4290621 cacaagaattgtgacattgtgattggccaatgtcaccaatgtcacccaactgtatgtcacccaagtgctacccgta 4290696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 45231929 - 45231992
Alignment:
Q  135 aagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    ||||||||| ||||||||||||| |||| |||| ||||||| ||||||||||||||||||||||    
T  45231929 aagcattgtaacattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagta 45231992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 48000756 - 48000690
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    ||||||||||||| ||||||||||| ||||| |||| ||||||| ||||||| ||||||||||||||    
T  48000756 cacaagcattgtggcattgtgattgatcaatgtcaccaatgtcacccaactcaatgtcacccaagta 48000690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 38975868 - 38975791
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatccgtat 208  Q
    |||||||||||||| |||||||||||  |||| | || ||||||| |||||||||||||||||||||| | |||||||    
T  38975868 acacaagcattgtggcattgtgattgaccaatgttaccaatgtcacccaactctatgtcacccaagtattttccgtat 38975791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 4290608 - 4290541
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||| ||||||||| |||||||||||  ||||||||| ||| ||| ||||||||||||||||||||||    
T  4290608 acacgagcattgtggcattgtgattgaccaatatcaccaatatcacccaactctatgtcacccaagta 4290541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 34854770 - 34854837
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||| ||||||| |||||||||||  |||| |||| ||||||| ||||||||||||||||||||||    
T  34854770 acacaaacattgtggcattgtgattgaccaatgtcaccaatgtcacccaactctatgtcacccaagta 34854837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 48000819 - 48000878
Alignment:
Q  138 cattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||| ||||||||||||||||| |||| ||||||| |||||||||||| ||||||||    
T  48000819 cattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtgacccaagt 48000878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 15027605 - 15027538
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||| |||||||  |||||||||||||||| |||| |||||||  ||||||||||| |||||||||    
T  15027605 acacaaacattgtggtattgtgattggtcaatgtcaccaatgtcaaacaactctatgttacccaagta 15027538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 15027618 - 15027661
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtca 175  Q
    ||||||||||||||||||||||||||||||| |||| |||||||    
T  15027618 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtca 15027661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 27028791 - 27028725
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||||||||||||||||||  |||| |||| |||||||  ||||| ||||||||| ||||    
T  27028791 acacaagcattgtgacattgtgattgtccaatgtcaccaatgtcactcaactatatgtcaccaaagt 27028725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 41945931 - 41945996
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    |||||||||||| ||||||||||||  |||||| || |||||||  ||||| ||||||||||||||    
T  41945931 cacaagcattgtaacattgtgattgaccaatattaccaatgtcactcaactttatgtcacccaagt 41945996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 22764775 - 22764819
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtca 175  Q
    |||||| |||||||||||||||||||| ||||||||| |||||||    
T  22764775 acacaaacattgtgacattgtgattggccaatatcaccaatgtca 22764819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 34854697 - 34854750
Alignment:
Q  70 taacactttggtgacataaagttaggtgacattggtcaattacaatgtcacaat 123  Q
    |||||||| ||||||||| |||| ||||||||||| |||| |||||| ||||||    
T  34854697 taacacttgggtgacatagagtttggtgacattggccaatcacaatgccacaat 34854750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 38975881 - 38975946
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||||| |||| | |||| ||||| |||| ||||||| | |||||||||||||| ||||    
T  38975881 cacaagcattgtggcattataattgatcaatgtcaccaatgtcacctaactctatgtcacctaagt 38975946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 4649448 - 4649408
Alignment:
Q  80 gtgacataaagttaggtgacattggtcaattacaatgtcac 120  Q
    |||||||| |||| |||||||||||||||| ||||||||||    
T  4649448 gtgacatagagtttggtgacattggtcaatcacaatgtcac 4649408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 27028905 - 27028869
Alignment:
Q  94 ggtgacattggtcaattacaatgtcacaatatttgtg 130  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  27028905 ggtgacattggtcaatcacaatgtcacaatgtttgtg 27028869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 29053446 - 29053390
Alignment:
Q  74 actttggtgacataaagttaggtgacattggtcaattacaatgtcacaatatttgtg 130  Q
    |||| ||||||||| |||| ||||||||||| |||| |||||| |||||| ||||||    
T  29053446 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgtttgtg 29053390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 47661918 - 47661981
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaa 195  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||    
T  47661918 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaa 47661981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 42375086 - 42375151
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||||||||||||||||| ||||| |||| ||||||| |||||||||||||||||||||    
T  42375086 cacaagcattgtgacattgtgattgatcaatgtcaccaatgtcacccaactctatgtcacccaagt 42375151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 23444331 - 23444268
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaa 195  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| ||||||    
T  23444331 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgttacccaa 23444268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 30861849 - 30861916
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||||||||||| |||||||||||| |||| |||| ||| ||||||||||||||||||||||||||    
T  30861849 acacaagcattgtggcattgtgattggccaatgtcaccaatatcatccaactctatgtcacccaagta 30861916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 51265508 - 51265441
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||||||||||| |||||||||||| |||| |||| ||||||| ||||||||||||||||||||||    
T  51265508 acacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagta 51265441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 51265521 - 51265586
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    |||||||||||||||||| |||||||||||| |||| ||||||| ||||||||| |||||||||||    
T  51265521 cacaagcattgtgacattatgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagt 51265586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 23444344 - 23444408
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaa 195  Q
    |||||||||||||| |||||||||||| |||| |||| ||||||| |||||||||||||||||||    
T  23444344 acacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaa 23444408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 6271765 - 6271698
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||||||||||| |||||||||||| |||| |||| ||| ||| ||||||||||||||||||||||    
T  6271765 acacaagcattgtggcattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagta 6271698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 3862621 - 3862687
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    |||||||||||||| |||||||||||| |||| |||| ||||||| |||||||||||||||| ||||    
T  3862621 acacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacctaagt 3862687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 3871378 - 3871444
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    |||||||||||||| |||||||||||| |||| |||| ||||||| |||||||||||||||| ||||    
T  3871378 acacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacctaagt 3871444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 6271778 - 6271843
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    |||||||||||||||||||||||||| |||| |||| ||| |||  ||||||||||||||||||||    
T  6271778 cacaagcattgtgacattgtgattggccaatgtcaccaatatcactcaactctatgtcacccaagt 6271843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 197
Target Start/End: Original strand, 26186032 - 26186155
Alignment:
Q  84 cataaagttaggtgacattggtcaattacaatgtcacaatatttgtga----------cacaagcattgtgacattgtgattggtcaatatcactaatgt 173  Q
    |||||| || |||||||||||||||| |||||||||||||  ||||||          |||||||||||||| ||||||||||| |||| |||  |||||    
T  26186032 cataaacttgggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagaaacacaagcattgtgaaattgtgattggccaatgtcatcaatgt 26186131  T
Q  174 catccaactctatgtcacccaagt 197  Q
     | |||||||||||||||||||||    
T  26186132 tacccaactctatgtcacccaagt 26186155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 44380013 - 44380069
Alignment:
Q  139 attgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaa 195  Q
    ||||| ||||||||||||||||||||||| |||||||  ||||||||||||||||||    
T  44380013 attgtaacattgtgattggtcaatatcaccaatgtcactcaactctatgtcacccaa 44380069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 35682242 - 35682301
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcac 191  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||| | |||||||||||||    
T  35682242 cacaagcattgtgacattgtgatcggtcaatgtcaccaatgtcacctaactctatgtcac 35682301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 53954686 - 53954745
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcac 191  Q
    |||||||||||||||||||| ||||| |||| |||| ||||||| |||||||||||||||    
T  53954686 cacaagcattgtgacattgtaattggacaatgtcaccaatgtcacccaactctatgtcac 53954745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 30709986 - 30710041
Alignment:
Q  142 gtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    |||||||||||||||| |||| |||| ||||||| | |||||||||||||||||||    
T  30709986 gtgacattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 30710041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 35682229 - 35682163
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||| ||| ||||||||||||||| |||| |||| ||| ||| | |||||||||||||||||||    
T  35682229 acacaagtattatgacattgtgattggccaatgtcaccaatatcacctaactctatgtcacccaagt 35682163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 47404590 - 47404640
Alignment:
Q  73 cactttggtgacataaagttaggtgacattggtcaattacaatgtcacaat 123  Q
    ||||| ||||||||| |||| |||||||||||||||| |||||||||||||    
T  47404590 cacttgggtgacatagagttgggtgacattggtcaatcacaatgtcacaat 47404640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 47404729 - 47404668
Alignment:
Q  62 aagtcggataacactttggtgacataaagttaggtgacattggtcaattacaatgtcacaat 123  Q
    |||||||| || |||| ||||||||| |||| |||||||||||||||| |||||| ||||||    
T  47404729 aagtcggaaaatacttgggtgacatagagttgggtgacattggtcaatcacaatgccacaat 47404668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 47762664 - 47762600
Alignment:
Q  138 cattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactat 202  Q
    |||||| |||||||||||||||||| |||| ||| |||  || ||||||||||||||| ||||||    
T  47762664 cattgtaacattgtgattggtcaatgtcacaaatatcactcagctctatgtcacccaaatactat 47762600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 55089995 - 55090051
Alignment:
Q  67 ggataacactttggtgacataaagttaggtgacattggtcaattacaatgtcacaat 123  Q
    ||||| ||||| ||||||||| ||||  ||||||||||||||| |||||||||||||    
T  55089995 ggatatcacttgggtgacatagagttgagtgacattggtcaatcacaatgtcacaat 55090051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 55090135 - 55090079
Alignment:
Q  67 ggataacactttggtgacataaagttaggtgacattggtcaattacaatgtcacaat 123  Q
    ||||| ||||| ||||||||| ||||  ||||||||||||||| |||||||||||||    
T  55090135 ggatatcacttgggtgacatagagttgagtgacattggtcaatcacaatgtcacaat 55090079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 167
Target Start/End: Original strand, 40789255 - 40789290
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcac 167  Q
    |||||||||||||||||||||||||| |||||||||    
T  40789255 cacaagcattgtgacattgtgattggccaatatcac 40789290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 175
Target Start/End: Complemental strand, 53937954 - 53937919
Alignment:
Q  140 ttgtgacattgtgattggtcaatatcactaatgtca 175  Q
    ||||||||||||| ||||||||||||||||||||||    
T  53937954 ttgtgacattgtggttggtcaatatcactaatgtca 53937919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 38714899 - 38714965
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    ||||| ||||||||||||| ||||||  |||||||| ||||||| ||| || ||||||| |||||||    
T  38714899 cacaaacattgtgacattgagattgggtaatatcaccaatgtcacccatctatatgtcatccaagta 38714965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 40789179 - 40789241
Alignment:
Q  68 gataacactttggtgacataaagttaggtgacattggtcaattacaatgtcacaatatttgtg 130  Q
    ||||||||||   ||||||| |||| ||||||||||| |||| ||||||||||||| ||||||    
T  40789179 gataacacttgaatgacatagagtttggtgacattggccaatcacaatgtcacaatgtttgtg 40789241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 50384110 - 50384160
Alignment:
Q  73 cactttggtgacataaagttaggtgacattggtcaattacaatgtcacaat 123  Q
    ||||| ||||||||| |||| ||||||||||| |||| |||||||||||||    
T  50384110 cacttgggtgacatagagttgggtgacattggccaatcacaatgtcacaat 50384160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 42375016 - 42375065
Alignment:
Q  74 actttggtgacataaagttaggtgacattggtcaattacaatgtcacaat 123  Q
    |||| ||||||||| |||| |||||||||||||||| |||||| ||||||    
T  42375016 acttgggtgacatagagttgggtgacattggtcaatcacaatgccacaat 42375065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 47661905 - 47661856
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaa 180  Q
    |||||||||||||| |||||||||||| |||| |||| ||||||| ||||    
T  47661905 acacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 47661856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 53954616 - 53954665
Alignment:
Q  74 actttggtgacataaagttaggtgacattggtcaattacaatgtcacaat 123  Q
    |||| ||||| |||||||| ||||||||||| |||| |||||||||||||    
T  53954616 acttgggtgatataaagttgggtgacattggccaatcacaatgtcacaat 53954665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 24006166 - 24006202
Alignment:
Q  169 aatgtcatccaactctatgtcacccaagtactatccg 205  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  24006166 aatgtcacccaactctatgtcacccaagtgctatccg 24006202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 28693922 - 28693986
Alignment:
Q  67 ggataacactttggtgacataaagttaggtgacattggtcaattacaatgtcacaatatttgtga 131  Q
    ||||| ||||| |||||||||||||| | ||||||||  |||| ||||| ||||||| |||||||    
T  28693922 ggatagcacttgggtgacataaagttggatgacattgaccaatcacaatatcacaatgtttgtga 28693986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 31430520 - 31430488
Alignment:
Q  135 aagcattgtgacattgtgattggtcaatatcac 167  Q
    |||||||||||||||||||||||||||| ||||    
T  31430520 aagcattgtgacattgtgattggtcaatgtcac 31430488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 55089888 - 55089932
Alignment:
Q  79 ggtgacataaagttaggtgacattggtcaattacaatgtcacaat 123  Q
    ||||||||| ||||  ||||||||||||||| |||||||||||||    
T  55089888 ggtgacatagagttgagtgacattggtcaatcacaatgtcacaat 55089932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 49765 - 49691
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatccgt 206  Q
    ||||||||||||||||||||||||||||||| |||  ||||||| ||||||||||||||||||||| ||| ||||    
T  49765 cacaagcattgtgacattgtgattggtcaatgtcatcaatgtcacccaactctatgtcacccaagtgctacccgt 49691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 49835 - 49786
Alignment:
Q  74 actttggtgacataaagttaggtgacattggtcaattacaatgtcacaat 123  Q
    |||| ||||||||| |||||||||||||||| |||| |||||| ||||||    
T  49835 acttcggtgacatagagttaggtgacattggccaatcacaatgccacaat 49786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 27282 - 27217
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    |||||| ||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  27282 cacaagaattatgacattgtgattggccaatatcactaatgtcacccaactctatgtcacccaagt 27217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 27299 - 27362
Alignment:
Q  135 aagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    |||||||||| |||||||||||| ||||||||| ||||||| |||||||||| |||||||||||    
T  27299 aagcattgtggcattgtgattggccaatatcaccaatgtcacccaactctatatcacccaagta 27362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 24587524 - 24587458
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||||||||||||||||||  |||| |||||||||||| |||||||||||||||| ||||    
T  24587524 acacaagcattgtgacattgtgattgaccaatgtcactaatgtcacccaactctatgtcacctaagt 24587458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 7384550 - 7384485
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||    
T  7384550 cacaaacattatgacattgtgattggtcaatgtcactaatgtcatccaactctatatcacctaagt 7384485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 195
Target Start/End: Original strand, 551167 - 551304
Alignment:
Q  70 taacactttggtgacataaagttaggtgacattggtcaattacaatgtcacaatatttgtga------------cacaagcattgtgacattgtgattgg 157  Q
    |||||||| |||| |||| |||| |||||||||||||||| |||||| |||||| |||||||            ||||||||||||| ||||||||||||    
T  551167 taacacttgggtggcatagagttgggtgacattggtcaatcacaatgccacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattgg 551266  T
Q  158 tcaatatcactaatgtcatccaactctatgtcacccaa 195  Q
     |||| |||| ||| |||||||| ||||||||||||||    
T  551267 ccaatgtcaccaatatcatccaattctatgtcacccaa 551304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 24975814 - 24975748
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagta 198  Q
    ||||||||||||| |||||||||||  |||| |||| ||||||| ||||||||||||||||||||||    
T  24975814 cacaagcattgtggcattgtgattgaccaatgtcaccaatgtcagccaactctatgtcacccaagta 24975748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 24618660 - 24618598
Alignment:
Q  135 aagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||| |||||||||||||| ||||| |||| ||||||| ||||||||||||||| |||||    
T  24618660 aagcattatgacattgtgattgatcaatgtcaccaatgtcacccaactctatgtcactcaagt 24618598  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 12343176 - 12343232
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgt 188  Q
    |||||||||||||||||||||||||| |||| |||| ||| ||| ||||||||||||    
T  12343176 cacaagcattgtgacattgtgattggccaatgtcaccaatctcacccaactctatgt 12343232  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 17750963 - 17750893
Alignment:
Q  133 acaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagtactatcc 204  Q
    |||| |||||||||||||||||||  |||| |||| |||||||| |||||||||||||| ||||| ||||||    
T  17750963 acaaacattgtgacattgtgattgaccaatgtcaccaatgtcat-caactctatgtcacacaagtgctatcc 17750893  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 10521846 - 10521904
Alignment:
Q  65 tcggataacactttggtgacataaagttaggtgacattggtcaattacaatgtcacaat 123  Q
    ||||||| ||||| ||||||||| |||| ||||||||||| |||| |||||||||||||    
T  10521846 tcggatagcacttgggtgacatagagtttggtgacattggccaatcacaatgtcacaat 10521904  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 17750978 - 17751043
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||||||||||||||| || |||| |||  ||| ||| ||||||||||||||| |||||    
T  17750978 cacaagcattgtgacattgtgatcggccaatgtcatcaatatcacccaactctatgtcacacaagt 17751043  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 13043533 - 13043596
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaa 195  Q
    |||||||||||||| ||||||||| | |||| |||| ||| |||  ||||||||||||||||||    
T  13043533 cacaagcattgtgatattgtgattagccaatgtcaccaatatcactcaactctatgtcacccaa 13043596  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 161
Target Start/End: Original strand, 24618676 - 24618706
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaa 161  Q
    |||||||||||||||||||||||||||||||    
T  24618676 acacaagcattgtgacattgtgattggtcaa 24618706  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 12343137 - 12343105
Alignment:
Q  166 actaatgtcatccaactctatgtcacccaagta 198  Q
    |||||||||| ||||||||||||||||||||||    
T  12343137 actaatgtcacccaactctatgtcacccaagta 12343105  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 31654368 - 31654332
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcac 167  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  31654368 acacaagcattgtgacattgtgattggccaatgtcac 31654332  T

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Target: scaffold0586 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 7109 - 7050
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcac 191  Q
    ||||||||||||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  7109 cacaagcattgtgacattgtgattggctaatatcaccaatgtcacccaactctatgtcac 7050  T

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Target: scaffold0586; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 7122 - 7187
Alignment:
Q  131 acacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcacccaagt 197  Q
    ||||||||||||||||||||||||||| |||| |||| ||||||| ||||||||||||||| |||||    
T  7122 acacaagcattgtgacattgtgattggccaatgtcaccaatgtca-ccaactctatgtcacacaagt 7187  T

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Target: scaffold0180 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 19184 - 19125
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcactaatgtcatccaactctatgtcac 191  Q
    ||||||||||||||||||||||||| |||||||||  ||||||| |||||||||||||||    
T  19184 cacaagcattgtgacattgtgattgatcaatatcatcaatgtcacccaactctatgtcac 19125  T

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Target: scaffold0481 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 167
Target Start/End: Complemental strand, 2949 - 2914
Alignment:
Q  132 cacaagcattgtgacattgtgattggtcaatatcac 167  Q
    ||||| ||||||||||||||||||||||||||||||    
T  2949 cacaaacattgtgacattgtgattggtcaatatcac 2914  T

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Target: scaffold0047 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 63763 - 63819
Alignment:
Q  74 actttggtgacataaagttaggtgacattggtcaattacaatgtcacaatatttgtg 130  Q
    |||| ||||||||| |||| ||||||||||| |||| |||||| |||||| ||||||    
T  63763 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgtttgtg 63819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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