View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18800_low_7 (Length: 287)

Name: NF18800_low_7
Description: NF18800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18800_low_7
NF18800_low_7
[»] chr4 (14 HSPs)
chr4 (15-270)||(2519090-2519345)
chr4 (84-253)||(2486181-2486350)
chr4 (84-253)||(2491002-2491171)
chr4 (84-212)||(2525672-2525800)
chr4 (84-215)||(5035534-5035665)
chr4 (71-209)||(2477486-2477624)
chr4 (71-211)||(5106317-5106461)
chr4 (71-184)||(2467473-2467586)
chr4 (87-216)||(5102106-5102235)
chr4 (87-205)||(2621180-2621298)
chr4 (143-211)||(2534231-2534299)
chr4 (87-136)||(2547523-2547572)
chr4 (71-109)||(548271-548309)
chr4 (84-120)||(2536592-2536628)
[»] chr5 (1 HSPs)
chr5 (89-185)||(39252924-39253020)
[»] chr1 (1 HSPs)
chr1 (87-155)||(15837982-15838050)
[»] chr7 (1 HSPs)
chr7 (87-210)||(2576415-2576537)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 270
Target Start/End: Complemental strand, 2519345 - 2519090
Alignment:
Q  15 aatattaatgactatgggatgctaggttttaaccgtcaccatggcattttaaggtttctctctgttgtgtcaaaacagtttctgtccatcaccaaccgtt 114  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2519345 aatattaatgagtatgggatgctaggttttaaccgtcaccatggcattttaaggtttctctctgttgtttcaaaacagtttctgtccatcaccaaccgtt 2519246  T
Q  115 ttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttccccaacgttacatcactcaacatcactctctcttc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2519245 ttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttccccaacgttacatcactcaacatcactctctcttc 2519146  T
Q  215 ccaagacaggctccgagaaggcgacctcagcgagcttctaaccaaaatatgcactt 270  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  2519145 ccaagacaggctccgagaagacaacctcagcgagcttctaaccaaaatatgcactt 2519090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 84 - 253
Target Start/End: Complemental strand, 2486350 - 2486181
Alignment:
Q  84 tcaaaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttcccca 183  Q
    |||||||||||||||||||||||||||||| | |||| ||| ||||||||||| ||  ||||||||||||||||||||||||||||| || ||||||| |    
T  2486350 tcaaaacagtttctgtccatcaccaaccgtctccgattctcggtcacaatctccgagaaaacaatccctttccttcatcgtctcttttatgggttcccta 2486251  T
Q  184 acgttacatcactcaacatcactctctcttcccaagacaggctccgagaaggcgacctcagcgagcttct 253  Q
    | |||||||| | ||| ||||||||||||||||||||||||  | ||||| | |||||| ||||||||||    
T  2486250 atgttacatcccacaatatcactctctcttcccaagacaggaacagagaaagtgacctcggcgagcttct 2486181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 84 - 253
Target Start/End: Complemental strand, 2491171 - 2491002
Alignment:
Q  84 tcaaaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttcccca 183  Q
    ||||||||||||||||||||||| |||||| | ||||  || ||||||||||| |||  |||||||||||||||| ||||||||||||| |||||||| |    
T  2491171 tcaaaacagtttctgtccatcacaaaccgtctccgattttcggtcacaatctccgatgcaacaatccctttccttaatcgtctctttgaaaggttcccta 2491072  T
Q  184 acgttacatcactcaacatcactctctcttcccaagacaggctccgagaaggcgacctcagcgagcttct 253  Q
    || |||||||| |||| ||||| |||||||||| | |||||  || |||||  |||||||||||||||||    
T  2491071 acattacatcaatcaatatcaccctctcttcccgatacaggaacctagaagttgacctcagcgagcttct 2491002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 84 - 212
Target Start/End: Complemental strand, 2525800 - 2525672
Alignment:
Q  84 tcaaaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttcccca 183  Q
    ||||||||||||||||||||||||||| || |||||| ||  |||||||||||  ||  ||| |||||||| ||| ||||||||||||| |||||||| |    
T  2525800 tcaaaacagtttctgtccatcaccaacagtcttcgattcttggtcacaatctccaatgcaactatcccttttcttaatcgtctctttgaaaggttcccta 2525701  T
Q  184 acgttacatcactcaacatcactctctct 212  Q
    || || |||||||||| ||||||||||||    
T  2525700 acattgcatcactcaatatcactctctct 2525672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 5035665 - 5035534
Alignment:
Q  84 tcaaaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttcccca 183  Q
    |||||||||||||| ||||||||||||||| |||||| ||  |||| |||||| ||   ||||||||||||||||  |||||||||||| |||||||| |    
T  5035665 tcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctctgaggcaacaatccctttccttagtcgtctctttgaaaggttcccta 5035566  T
Q  184 acgttacatcactcaacatcactctctcttcc 215  Q
    |  ||||||||||||| ||||||||| |||||    
T  5035565 atattacatcactcaatatcactctcacttcc 5035534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 2477624 - 2477486
Alignment:
Q  71 tctctctgttgtgtcaaaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctcttt 170  Q
    |||||| ||||| |||||| ||||||||||||| |||||| || |||||| ||| || ||||| || |||||||| ||||||| |||||||| |||||||    
T  2477624 tctctcggttgtctcaaaagagtttctgtccataaccaacagtcttcgattctctgtgacaatttccgatcaaaccatcccttcccttcatcctctcttt 2477525  T
Q  171 gataggttccccaacgttacatcactcaacatcactctc 209  Q
     | |||||||| ||||| ||||| || ||||||||||||    
T  2477524 caaaggttccctaacgtcacatccctaaacatcactctc 2477486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 211
Target Start/End: Original strand, 5106317 - 5106461
Alignment:
Q  71 tctctctgttgtgtcaaaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctcttt 170  Q
    ||||||||  || |||||||||||| |||||||||||||||||  ||||| ||| ||||||||| |  ||||||| ||||||||| ||||||| |||||     
T  5106317 tctctctgccgtctcaaaacagtttttgtccatcaccaaccgtcctcgattctcggtcacaatcactaatcaaaccatccctttcattcatcgcctcttc 5106416  T
Q  171 gataggttccccaacgttacatcac----tcaacatcactctctc 211  Q
     | ||||||||  |||| |||||||    ||||||||||||||||    
T  5106417 aaaaggttcccttacgtcacatcactcactcaacatcactctctc 5106461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 2467586 - 2467473
Alignment:
Q  71 tctctctgttgtgtcaaaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctcttt 170  Q
    |||||| || || |||||||||||| ||||||| |||||| || |||||| ||| ||| | || || ||   |||||||||||| |||||||||||||||    
T  2467586 tctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgattctccgtctcgatttccgacggaacaatccctttacttcatcgtctcttt 2467487  T
Q  171 gataggttccccaa 184  Q
    || |||||||||||    
T  2467486 gaaaggttccccaa 2467473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 87 - 216
Target Start/End: Original strand, 5102106 - 5102235
Alignment:
Q  87 aaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttccccaacg 186  Q
    ||||||||| |||| ||||| ||  || |||||| ||| ||||||||| | |||| ||| ||||||||| ||| ||  || || || |||||||| ||||    
T  5102106 aaacagtttttgtctatcactaatagtcttcgattctcggtcacaatcactgatcgaaccatccctttcattcctctccttttcgaaaggttccctaacg 5102205  T
Q  187 ttacatcactcaacatcactctctcttccc 216  Q
    | ||||||||||||||||| ||||||||||    
T  5102206 tcacatcactcaacatcaccctctcttccc 5102235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 2621180 - 2621298
Alignment:
Q  87 aaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttccccaacg 186  Q
    ||||||||| ||||||||||||||||| | || | |||  |||||||||| ||| |||| ||||||||| ||| ||| ||||| || |||||||| ||      
T  2621180 aaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaata 2621279  T
Q  187 ttacatcactcaacatcac 205  Q
    | ||||| |||||||||||    
T  2621280 tcacatccctcaacatcac 2621298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 2534299 - 2534231
Alignment:
Q  143 aacaatccctttccttcatcgtctctttgataggttccccaacgttacatcactcaacatcactctctc 211  Q
    |||||||||||||||| | || |||||||| |||||||| ||  ||||||||||||| |||||||||||    
T  2534299 aacaatccctttccttaaccgcctctttgaaaggttccctaatattacatcactcaatatcactctctc 2534231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 2547572 - 2547523
Alignment:
Q  87 aaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctc 136  Q
    ||||||||||||||||||||||||||| | || | |||||||||||||||    
T  2547572 aaacagtttctgtccatcaccaaccgtctccggttctcagtcacaatctc 2547523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 548309 - 548271
Alignment:
Q  71 tctctctgttgtgtcaaaacagtttctgtccatcaccaa 109  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  548309 tctctctgttgtctcaaaacagtttctctccatcaccaa 548271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 2536628 - 2536592
Alignment:
Q  84 tcaaaacagtttctgtccatcaccaaccgttttcgat 120  Q
    |||||||||||||||||||||||||||| | ||||||    
T  2536628 tcaaaacagtttctgtccatcaccaaccttcttcgat 2536592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 39252924 - 39253020
Alignment:
Q  89 acagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttccccaac 185  Q
    ||||||||| ||||||| ||||||| | ||||||||  || ||||| | |||||||||||||||| ||||| || ||||||||| ||||||||||||    
T  39252924 acagtttctctccatcagcaaccgtctccgatcctccctcgcaatcaccgatcaaacaatcccttcccttcctcttctctttgaaaggttccccaac 39253020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 15837982 - 15838050
Alignment:
Q  87 aaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttc 155  Q
    ||||||||||| ||||||||||||||| | |||| |||  ||| ||||  |||||||||||||||||||    
T  15837982 aaacagtttctctccatcaccaaccgtctccgattctccctcaaaatcatagatcaaacaatccctttc 15838050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 210
Target Start/End: Original strand, 2576415 - 2576537
Alignment:
Q  87 aaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttccccaacg 186  Q
    ||||||||| | ||||||||||| ||| |||||| ||| ||||||||| | |||  ||| ||||||||| ||  ||| ||||| || ||| |||| ||||    
T  2576415 aaacagtttttatccatcaccaatcgtcttcgattctcggtcacaatcaccgattgaaccatccctttcatttgtcgcctcttcgaaaggatccctaacg 2576514  T
Q  187 ttacatcactcaacatcactctct 210  Q
    | | ||||||||||| ||||||||    
T  2576515 tca-atcactcaacaacactctct 2576537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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