View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18802_high_1 (Length: 684)
Name: NF18802_high_1
Description: NF18802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18802_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 616; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 16 - 666
Target Start/End: Original strand, 39580310 - 39580961
Alignment:
| Q |
16 |
atgaagcctgaggtaatgatcaatattcttttgcacaggaacactccaacttatgtttaaaccgtttgaaccatttttactctctttgccactattataa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
39580310 |
atgaagcctgaggtaatgatcaatattcttttccacaggaacactccaacttatgtttaaaccgtttgaaccatttttactctctttggcacttttataa |
39580409 |
T |
|
| Q |
116 |
agagcgtctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtataatatcacctccaaagtaaccattcttagcgttat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39580410 |
agagcgtctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtttaatatcacctccaaagaaaccattcttagcgttat |
39580509 |
T |
|
| Q |
216 |
gtggattagtgatgtaactgtcatctggtagccactttcttgataagctatcgttttcccctgtgatggcttctccaccgacggtaagacggtgaatggt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39580510 |
gtggattagtgatgtaactgtcatctggtaaccactttcttgataagctattgttttcccctgtgatggcttctccaccgacggtaagacggtgaatggt |
39580609 |
T |
|
| Q |
316 |
ttccaaggctcgcgagaataaaccgccagtgtaagaagataagccttgaccagtagaattaatgtaattgaaatgtgtgactgattcggggatgaaatga |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39580610 |
ttccaaggctcgcgagaataaaccgccagtgtaagaagataagccttgaccagtagaattaatgtaattgaaatgtgtgactgattcggggatgaaatga |
39580709 |
T |
|
| Q |
416 |
gtggggagtataaagagttccattgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatcttttacgggtgattttaaagaaat |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39580710 |
gtggggagtataaagagttccattgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatcttttacgggtgattttaaagaaat |
39580809 |
T |
|
| Q |
516 |
attctttaattgaaag-ggagtttatatcaaaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaag |
614 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39580810 |
attctttaattgaaagcggagtttatatcaaaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaag |
39580909 |
T |
|
| Q |
615 |
agaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacggtttt |
666 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39580910 |
agaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacggtttt |
39580961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 121 - 666
Target Start/End: Original strand, 39521227 - 39521787
Alignment:
| Q |
121 |
gtctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtataatatcacctccaaagtaaccattcttagcgttatgtgga |
220 |
Q |
| |
|
||||||| |||||| | |||||||||||||||||||||| |||| |||||||||| ||||| | | ||||| | | |||||||||||| |||||| |
|
|
| T |
39521227 |
gtctggagcaatatattgatttgaatttggaccatcagatgtatcatttgcagtgcgtggaatatgaacgtcaaaggagcgattcttagcgttttgtgga |
39521326 |
T |
|
| Q |
221 |
ttagtgatgtaactgtcatctggtagccactttcttgataagctatcgttttcccctgt-gatggcttctccaccgacggtaagacggtgaatggtttcc |
319 |
Q |
| |
|
||||| | ||||||||||||| || ||| | ||| ||||| ||||| || || || | || | || |||||||| |||||||| | |||||||| |
|
|
| T |
39521327 |
ttagttacataactgtcatctgctaaccattctctcgataatgtatcggtt-cctctatcgacagtttggtcaccgacgttaagacggagtttggtttcc |
39521425 |
T |
|
| Q |
320 |
aaggctcgc---gagaataaaccgccagtgtaagaagataagccttgaccagtagaattaatgtaattgaaatgtgtgactgattcggggatgaaatgag |
416 |
Q |
| |
|
|| | ||| ||| |||||||||| | |||| || |||||| ||||||||||| |||||||||||| ||| ||||| |||||||| |||||| |
|
|
| T |
39521426 |
aacgatcgttgtgagtgtaaaccgccactataagtagttaagccccgaccagtagaaccgatgtaattgaaacgtgctactgaatcggggattaaatgaa |
39521525 |
T |
|
| Q |
417 |
tggggagtataaagagttccattgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatcttttacgggtgattttaaagaaata |
516 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | | ||||||||| | |||| |
|
|
| T |
39521526 |
gagggagcataaagagttcaattgcattaacaaacgcaaatgatgatgtttgaggtgtgaaagtgattgtgaatctttttctgatgattttaacgtaata |
39521625 |
T |
|
| Q |
517 |
ttctttaattgaaagggagt------ttatatca------aaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagatta |
604 |
Q |
| |
|
||||| | | || | |||| | | ||| ||||| ||||||||| |||||| |||| |||||| |||||||||||| |||||| ||| |
|
|
| T |
39521626 |
ctcttttactaaaggagagttggtggtgttttcagcgttgaaattatgtaacagaaggaaaccaggaactgaaacggtgaattttgcagaggaaaggtta |
39521725 |
T |
|
| Q |
605 |
gttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacggtttt |
666 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
39521726 |
gttggtgaagagaatgaaaagaaatggaaacgtaccatgtaagtgttgcttggaacggtttt |
39521787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 16 - 666
Target Start/End: Original strand, 39510879 - 39511541
Alignment:
| Q |
16 |
atgaagcctgaggtaatgatcaatattcttttgcacaggaacactccaacttatgtttaaaccgtttgaaccatttttactctctttgccactattataa |
115 |
Q |
| |
|
||||||||||||| ||||||| | | | ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||| |||| | |||||| |
|
|
| T |
39510879 |
atgaagcctgaggaaatgatctacagttttttgcacaggaacactccaacttatgtttaaaccttttgaaccgtttgcactctcttggccagttttataa |
39510978 |
T |
|
| Q |
116 |
agagcgtctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtataatatcacctccaaagtaaccattcttagcgttat |
215 |
Q |
| |
|
| | ||||||||||||| |||| |||||||||||||||||||||||||| ||||| | || |||||||| |||||| ||||| |||| || || | |
|
|
| T |
39510979 |
acaatatctggaccaatatatatacttgaatttggaccatcagattcatcatttgcagcgtgtttaatatca---ccaaaggaaccaatcttcgcatttt |
39511075 |
T |
|
| Q |
216 |
gtggattagtgatgtaactgtcatctggtagccactttcttgataagctatcgttttcccctgtgatggcttctccaccgacggtaagacggtgaatggt |
315 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||| ||| | ||||||||| ||||| ||| | |||| || || || ||| ||||||| || | || |
|
|
| T |
39511076 |
gtggattagttatgtatctgtcatctcgtaaccattctcttgataatgtatcggcttctctagtgacattatcaccgcctacgttaagacgatgtttcgt |
39511175 |
T |
|
| Q |
316 |
ttccaaggctc---gcgagaataaaccgccagtgtaagaagataagccttgaccagtagaattaatgtaattgaaatgtgtgactgattcggggatgaaa |
412 |
Q |
| |
|
|||||| |||| | ||| |||||||||| | ||| |||||||||| || | |||| | ||||| | ||| | ||||| || ||||| ||| |
|
|
| T |
39511176 |
ttccaaagctcgttgtgagtttaaaccgccactataattagataagcctggagaactagattctttgtaagtaaaacgcaacactgaatcagggattaaa |
39511275 |
T |
|
| Q |
413 |
tgagtggggagtataaagagttccattgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatcttttacgggtgattttaaaga |
512 |
Q |
| |
|
||| |||||| | ||||||||| ||||| |||||||| || | |||||| ||||||||||||||||||||||||||||||| | | |||||| || | |
|
|
| T |
39511276 |
tgaacggggagcacaaagagttctattgcgttaacaaatgcgagtgatgatttttgaggtgtgaaagtgattttgaatctttttctgatgatttgaacgt |
39511375 |
T |
|
| Q |
513 |
aatattctttaattgaaagggagt------ttatatca------aaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaag |
600 |
Q |
| |
|
| |||||||| | | || | |||| | | ||| ||||||||||||||| |||||| |||| ||||| ||||||||||||||||||| |
|
|
| T |
39511376 |
agtattcttttactaaaggagagttggtggtgttttcagcgttgaaattttgtaacagaatgaaaccaggaactgaaacagtgaattttgcagtggaaag |
39511475 |
T |
|
| Q |
601 |
attagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacggtttt |
666 |
Q |
| |
|
||||||||| ||||||| || |||||||||||||||||| || ||||||||||| | |||||| |
|
|
| T |
39511476 |
tttagttggtgtagagaatgaaaggaaatggaaacgtaccatataggtgttgtttgggatggtttt |
39511541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 39543918 - 39544147
Alignment:
| Q |
16 |
atgaagcctgaggtaatgatcaatattcttttgcacaggaacactccaacttatgtttaaaccgtttgaaccatttttactctctttgccactattataa |
115 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||| ||||||||||||||||||||||||||||| || ||||| |||| ||||||||| || | | |||| |
|
|
| T |
39543918 |
atgaagcctaaggaaatgatcaatactcttttcaacaggaacactccaacttatgtttaaacctttagaaccgcttttgctctctttggcagtttcataa |
39544017 |
T |
|
| Q |
116 |
agagcgtctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtataatatcacctccaaagtaaccattcttagcgttat |
215 |
Q |
| |
|
| |||||| ||| |||||| |||||||||||||||||| ||| || || | |||||||||| |||| ||| || ||||| |||||||||||||||| | |
|
|
| T |
39544018 |
acagcgtccggagcaatatatatatttgaatttggaccttcatatgtattatttgcagtgcgtttaatttcatctgcaaaggaaccattcttagcgtttt |
39544117 |
T |
|
| Q |
216 |
gtggattagtgatgtaactgtcatctggta |
245 |
Q |
| |
|
|||||||||| || |||||||||||||||| |
|
|
| T |
39544118 |
gtggattagttatataactgtcatctggta |
39544147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 39524622 - 39524866
Alignment:
| Q |
16 |
atgaagcctgaggtaatgatcaatattcttttgcacaggaacactccaacttatgtttaaaccgtttgaaccatttttactctctttgccactattataa |
115 |
Q |
| |
|
||||||| | ||| ||||||| |||||||| | ||||||||||||||||||||||||||||||| |||||||||| |||| ||||| || | |||||| |
|
|
| T |
39524622 |
atgaagcataaggaaatgatctatattcttctccacaggaacactccaacttatgtttaaaccgattgaaccattaacactcactttggcagttttataa |
39524721 |
T |
|
| Q |
116 |
agagcgtctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtataatatcacctccaaagtaaccattcttagcgttat |
215 |
Q |
| |
|
| | |||||||| || | | |||||||||||| | || ||||||||||| |||||||||| ||||||||||| ||||| |||||||||||||||| | |
|
|
| T |
39524722 |
acaatatctggacctatgtatttatttgaatttgaatcaacagattcatcatttgcagtgcgtttaatatcaccttcaaaggaaccattcttagcgtttt |
39524821 |
T |
|
| Q |
216 |
gtggattagtgatgtaactgtcatctggtagccactttcttgata |
260 |
Q |
| |
|
| |||| ||| || || ||||||||||||| ||| | |||||||| |
|
|
| T |
39524822 |
ggggatcagttatatatctgtcatctggtaaccattctcttgata |
39524866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 401 - 666
Target Start/End: Original strand, 39525007 - 39525284
Alignment:
| Q |
401 |
tcggggatgaaatgagtggggagtataaagagttccattgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatcttttacggg |
500 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||||| ||||||||| |||| |||||||||| ||||||||||||| |||||||||||| |||| | | |
|
|
| T |
39525007 |
tcggggattaaatgaacagggagcataaagagttctattgcattagcaaaggcaaatgatgctttttgaggtgtgaacgtgattttgaatttttttctga |
39525106 |
T |
|
| Q |
501 |
tgattttaaagaaatattctttaattgaaagggagtttat------------atcaaaattttgtaacagagagaaacctggaaaggaaacgttgaattt |
588 |
Q |
| |
|
||||||||| | |||| ||||| | | || | ||||| | ||| ||||||||||||||| |||||| || | |||||| ||||||| |
|
|
| T |
39525107 |
tgattttaaggtaatactcttttactaaaggagagttggtggtgttttttgcatcgaaattttgtaacagaatgaaaccagggactgaaacggtgaattt |
39525206 |
T |
|
| Q |
589 |
tgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacggtttt |
666 |
Q |
| |
|
|||||||||||| ||| |||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39525207 |
tgcagtggaaaggttaagtggtgaagagaatgaaaagaaatggaaacgtaccatgtaggtgttgtttggtacggtttt |
39525284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 425 - 659
Target Start/End: Original strand, 39576179 - 39576425
Alignment:
| Q |
425 |
ataaagagttccattgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatcttttacgggtgattttaaagaaatattctttaa |
524 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| | ||||||||| | |||| ||||| | |
|
|
| T |
39576179 |
ataaagagttctattgcattaacaaacgcaaatgatgatgtttgaggtgtgaatatgattttgaatctttttctaatgattttaacgtaatactctttta |
39576278 |
T |
|
| Q |
525 |
ttgaa--ag-------ggagtttatatca---aaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaa |
612 |
Q |
| |
|
| || || || |||| | | ||||| ||||||||| |||||| |||| ||||| ||||||||||||||||||||| ||||||||| | |
|
|
| T |
39576279 |
ctaaagcagatttggtggtgttttcagcgttgaaattatgtaacagaaggaaaccaggaacggaaatgttgaattttgcagtggaaagtttagttggtga |
39576378 |
T |
|
| Q |
613 |
agagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggta |
659 |
Q |
| |
|
||||||| ||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
39576379 |
agagaatgaaaagaaacggaaacgtaccatataagtgttgtttggta |
39576425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 419 - 659
Target Start/End: Original strand, 39544321 - 39544573
Alignment:
| Q |
419 |
gggagtataaagagttccattgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatcttttacgggtgattttaaagaaatatt |
518 |
Q |
| |
|
||||| ||||||||||| | |||||||| |||||||||||| || ||||||||||||||||||||| |||||||||| | | ||||||||| | |||| | |
|
|
| T |
39544321 |
gggagaataaagagttcaaatgcattaaaaaacgcaaatgaagatgtttgaggtgtgaaagtgattgtgaatctttttctgatgattttaacgtaatact |
39544420 |
T |
|
| Q |
519 |
ctttaattgaaagggagtttata------tca------aaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagt |
606 |
Q |
| |
|
|||| | | || ||||| | ||| ||||||||||||||| |||||| || | ||||| ||||||||||||| |||||| ||||| |
|
|
| T |
39544421 |
cttttactaaagaagagttggtggtgttttcagagttgaaattttgtaacagaatgaaaccagggactgaaacattgaattttgcagaggaaaggttagt |
39544520 |
T |
|
| Q |
607 |
tggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggta |
659 |
Q |
| |
|
|||| |||||||| |||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
39544521 |
tggtgaagagaatgaaaagaaatggaaacataccatgtaggtgttgtttggta |
39544573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 93 - 245
Target Start/End: Original strand, 39575841 - 39575993
Alignment:
| Q |
93 |
tactctctttgccactattataaagagcgtctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtataatatcacctcc |
192 |
Q |
| |
|
|||||||||||||| | ||||||| | |||||| |||||| | ||||||||||||||||||||| |||| |||||||||| ||||||||| | |
|
|
| T |
39575841 |
tactctctttgccagttttataaacaatatctggagcaatatattgatttgaatttggaccatcagacgtatcatttgcagtgcgtggaatatcaccgtc |
39575940 |
T |
|
| Q |
193 |
aaagtaaccattcttagcgttatgtggattagtgatgtaactgtcatctggta |
245 |
Q |
| |
|
|||| | | |||||||||||| ||| ||||||| | || ||||||||||||| |
|
|
| T |
39575941 |
aaaggagcaattcttagcgttttgtagattagttacatatctgtcatctggta |
39575993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 587 - 657
Target Start/End: Complemental strand, 3331579 - 3331509
Alignment:
| Q |
587 |
tttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttgg |
657 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||| || ||||||||||||||||||||| ||||||||||| |
|
|
| T |
3331579 |
tttgcagtggaaaggttaattggtgaagagaatgaaaggaaatggaaacgtaccatgtaggtgttgtttgg |
3331509 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 437 - 481
Target Start/End: Complemental strand, 3331315 - 3331271
Alignment:
| Q |
437 |
attgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtg |
481 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
3331315 |
attgcattaacaaatgcaaatgatgatgtttgaggtgtgaaagtg |
3331271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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