View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18802_low_12 (Length: 240)

Name: NF18802_low_12
Description: NF18802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18802_low_12
NF18802_low_12
[»] chr4 (23 HSPs)
chr4 (17-219)||(39844280-39844483)
chr4 (16-69)||(51397892-51397945)
chr4 (14-70)||(53583147-53583203)
chr4 (14-68)||(4896519-4896573)
chr4 (14-68)||(46566927-46566981)
chr4 (14-67)||(2812612-2812665)
chr4 (14-67)||(17363229-17363282)
chr4 (14-67)||(29513715-29513768)
chr4 (14-67)||(31147230-31147283)
chr4 (14-67)||(46355312-46355365)
chr4 (14-67)||(56025255-56025308)
chr4 (14-66)||(1688447-1688499)
chr4 (16-68)||(10096763-10096815)
chr4 (14-66)||(25725713-25725765)
chr4 (18-70)||(36792328-36792380)
chr4 (14-70)||(38844509-38844565)
chr4 (14-66)||(46794520-46794572)
chr4 (14-70)||(48722065-48722121)
chr4 (14-70)||(49768888-49768944)
chr4 (14-66)||(51224857-51224909)
chr4 (14-70)||(51296208-51296264)
chr4 (18-66)||(52392248-52392296)
chr4 (14-69)||(55609184-55609239)
[»] chr2 (15 HSPs)
chr2 (14-66)||(36376868-36376920)
chr2 (14-66)||(5455472-5455524)
chr2 (14-69)||(6851678-6851733)
chr2 (14-69)||(7498010-7498065)
chr2 (14-69)||(30339990-30340045)
chr2 (17-68)||(32749996-32750047)
chr2 (14-68)||(11229340-11229394)
chr2 (14-68)||(42251939-42251993)
chr2 (14-68)||(42665831-42665885)
chr2 (14-67)||(546404-546457)
chr2 (14-70)||(1889143-1889199)
chr2 (14-70)||(4738591-4738647)
chr2 (14-66)||(34249580-34249632)
chr2 (14-66)||(42554776-42554828)
chr2 (14-66)||(43650568-43650620)
[»] chr8 (16 HSPs)
chr8 (14-70)||(28473564-28473620)
chr8 (14-67)||(35633988-35634041)
chr8 (14-67)||(40102022-40102075)
chr8 (14-78)||(27300334-27300398)
chr8 (14-70)||(45101392-45101448)
chr8 (32-74)||(13924014-13924056)
chr8 (14-68)||(21418611-21418665)
chr8 (14-68)||(34996379-34996433)
chr8 (14-63)||(6105455-6105504)
chr8 (18-67)||(7279978-7280027)
chr8 (14-62)||(3756905-3756953)
chr8 (14-70)||(7678728-7678784)
chr8 (14-66)||(12659052-12659104)
chr8 (14-66)||(21649187-21649239)
chr8 (14-70)||(27630893-27630949)
chr8 (14-66)||(29509266-29509318)
[»] chr6 (11 HSPs)
chr6 (14-71)||(23633342-23633399)
chr6 (14-66)||(18792451-18792503)
chr6 (14-68)||(3821376-3821430)
chr6 (14-68)||(8778891-8778945)
chr6 (14-68)||(19789095-19789149)
chr6 (14-68)||(28965859-28965913)
chr6 (14-68)||(29383555-29383609)
chr6 (32-72)||(2165326-2165366)
chr6 (32-72)||(2176959-2176999)
chr6 (14-66)||(8395342-8395394)
chr6 (14-66)||(25924883-25924935)
[»] chr7 (8 HSPs)
chr7 (14-74)||(5378619-5378679)
chr7 (14-71)||(28824498-28824555)
chr7 (14-65)||(34349046-34349097)
chr7 (14-68)||(24267666-24267720)
chr7 (18-68)||(48522154-48522204)
chr7 (14-66)||(40842405-40842457)
chr7 (14-70)||(47905135-47905191)
chr7 (14-66)||(48866949-48867001)
[»] chr3 (15 HSPs)
chr3 (16-67)||(5340100-5340151)
chr3 (14-67)||(43900776-43900829)
chr3 (14-67)||(44334820-44334873)
chr3 (14-67)||(46003704-46003757)
chr3 (14-69)||(22813069-22813124)
chr3 (14-69)||(26279881-26279936)
chr3 (14-70)||(1901945-1902001)
chr3 (14-70)||(1911391-1911447)
chr3 (14-70)||(5398914-5398970)
chr3 (14-66)||(8066355-8066407)
chr3 (14-69)||(16479629-16479684)
chr3 (14-66)||(32457774-32457826)
chr3 (16-68)||(37215252-37215304)
chr3 (14-66)||(37303093-37303145)
chr3 (14-66)||(41877688-41877740)
[»] scaffold0511 (1 HSPs)
scaffold0511 (14-66)||(11638-11690)
[»] scaffold0014 (1 HSPs)
scaffold0014 (14-70)||(199262-199318)
[»] chr5 (12 HSPs)
chr5 (14-66)||(34952425-34952477)
chr5 (14-68)||(3031832-3031886)
chr5 (32-74)||(12203150-12203192)
chr5 (14-68)||(14522983-14523037)
chr5 (14-68)||(20591493-20591547)
chr5 (14-67)||(39191853-39191906)
chr5 (14-70)||(3154998-3155054)
chr5 (14-70)||(10232495-10232551)
chr5 (14-66)||(12661966-12662018)
chr5 (14-66)||(34381012-34381064)
chr5 (14-70)||(39032623-39032679)
chr5 (14-66)||(39595272-39595324)
[»] chr1 (14 HSPs)
chr1 (14-66)||(24611844-24611896)
chr1 (32-74)||(11121484-11121526)
chr1 (14-68)||(43196108-43196162)
chr1 (14-68)||(44112452-44112506)
chr1 (14-68)||(50226898-50226952)
chr1 (14-67)||(4604419-4604472)
chr1 (14-67)||(44641922-44641975)
chr1 (16-69)||(49189229-49189282)
chr1 (14-70)||(366653-366709)
chr1 (14-66)||(8464532-8464584)
chr1 (14-66)||(30530418-30530470)
chr1 (14-66)||(33422238-33422290)
chr1 (14-66)||(34002339-34002391)
chr1 (14-66)||(39010814-39010866)
[»] scaffold0011 (1 HSPs)
scaffold0011 (16-69)||(219685-219738)
[»] scaffold0009 (1 HSPs)
scaffold0009 (14-71)||(190901-190958)
[»] scaffold0286 (1 HSPs)
scaffold0286 (32-72)||(17043-17083)
[»] scaffold0172 (1 HSPs)
scaffold0172 (14-66)||(16975-17027)
[»] scaffold0111 (1 HSPs)
scaffold0111 (14-66)||(36885-36937)
[»] scaffold0020 (1 HSPs)
scaffold0020 (14-66)||(155906-155958)


Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 39844280 - 39844483
Alignment:
Q  17 gaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctcttttctaaaacatgacataaaacatatgcatattgacaaatttattaatt 116  Q
    |||| ||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||| ||||||||||  ||||||||| |||||||||||||    
T  39844280 gaaaattgtcaaaatgttgtacaaaagtggttgtacagatatcatttctcttttctaaaacatggcataaaacat--gcatattgataaatttattaatt 39844377  T
Q  117 atgtcatat---gaaagactttaaatgtgtccacattttaaaaatagatataaataaaaatctctcgatcaattcatcaatggttaaacctaaacattta 213  Q
    |||||| ||   |||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||    
T  39844378 atgtcagataatgaaagactttaaatgtgttcacattttaaaaatagatataaataaagttctctcgatcaattcatcaatggttaaacctaaatattta 39844477  T
Q  214 aggaag 219  Q
    ||||||    
T  39844478 aggaag 39844483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 51397892 - 51397945
Alignment:
Q  16 agaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctcttt 69  Q
    ||||||||||||||| ||||||  ||||||| |||| |||||||||||||||||    
T  51397892 agaaagttgtcaaaaagttgtaataaagtggttgtacaaatatcatttctcttt 51397945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 53583147 - 53583203
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctttt 70  Q
    ||||||||||||||||| |||||   ||||||| |||| ||||||||||||||||||    
T  53583147 agagaaagttgtcaaaaagttgtgagaaagtggttgtacaaatatcatttctctttt 53583203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 4896519 - 4896573
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctt 68  Q
    ||||||||||||||||| |||||   ||||||| |||| ||||||||||||||||    
T  4896519 agagaaagttgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctctt 4896573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 46566981 - 46566927
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctt 68  Q
    ||||||||||||| ||| |||||   |||||||||||| ||||||||||||||||    
T  46566981 agagaaagttgtctaaaagttgtcacaaagtggatgtacaaatatcatttctctt 46566927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 2812612 - 2812665
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctct 67  Q
    ||||||||||||||||| ||||||  ||||||| |||| ||||| |||||||||    
T  2812612 agagaaagttgtcaaaaagttgtaataaagtggttgtataaataccatttctct 2812665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 17363282 - 17363229
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctct 67  Q
    ||||||||||||||||| ||||||  ||||||  |||| |||||||||||||||    
T  17363282 agagaaagttgtcaaaaagttgtaataaagtgattgtacaaatatcatttctct 17363229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 29513715 - 29513768
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctct 67  Q
    ||||||||||||||||| ||||||  ||| ||| |||| |||||||||||||||    
T  29513715 agagaaagttgtcaaaaagttgtagcaaaatggttgtacaaatatcatttctct 29513768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 31147283 - 31147230
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctct 67  Q
    |||||||||||||||||  |||||  ||||||| |||| |||||||||||||||    
T  31147283 agagaaagttgtcaaaaaattgtaataaagtggttgtacaaatatcatttctct 31147230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 46355312 - 46355365
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctct 67  Q
    |||||| |||||  ||| ||||||||||||||| |||| |||||||||||||||    
T  46355312 agagaatgttgtataaaagttgtacaaaagtggttgtacaaatatcatttctct 46355365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 56025308 - 56025255
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctct 67  Q
    ||||||||||||||||| ||||||  ||| ||| |||| |||||||||||||||    
T  56025308 agagaaagttgtcaaaaagttgtagcaaaatggttgtacaaatatcatttctct 56025255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 1688447 - 1688499
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    |||||||||||| |||| ||||||  ||||||| | |||||||||||||||||    
T  1688447 agagaaagttgtaaaaaagttgtaataaagtggttctagaaatatcatttctc 1688499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 10096763 - 10096815
Alignment:
Q  16 agaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctt 68  Q
    ||||| ||||||||| ||||||  ||||||| |||| ||||||||||||||||    
T  10096763 agaaaattgtcaaaaagttgtaataaagtggttgtacaaatatcatttctctt 10096815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 25725713 - 25725765
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||||||| |||||   ||||||| |||| ||||||||||||||    
T  25725713 agagaaagttgtcaaaaagttgttagaaagtggttgtacaaatatcatttctc 25725765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 36792380 - 36792328
Alignment:
Q  18 aaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctttt 70  Q
    |||||||| |||| |||||   |||||||||||| ||||||||||||||||||    
T  36792380 aaagttgtaaaaaagttgttataaagtggatgtacaaatatcatttctctttt 36792328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 38844509 - 38844565
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctttt 70  Q
    ||||||||||||||||| |||||   ||||||| |||| ||||||||||| ||||||    
T  38844509 agagaaagttgtcaaaaagttgtgagaaagtggttgtacaaatatcatttttctttt 38844565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 46794520 - 46794572
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||||||| |||||   ||||||| |||| ||||||||||||||    
T  46794520 agagaaagttgtcaaaaagttgtcagaaagtggttgtacaaatatcatttctc 46794572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 48722121 - 48722065
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctttt 70  Q
    ||||||| ||||||||| |||||   ||| |||||||| ||||||||||||||||||    
T  48722121 agagaaaattgtcaaaaagttgttgcaaaatggatgtacaaatatcatttctctttt 48722065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 49768888 - 49768944
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctttt 70  Q
    |||||||||||||||||  ||||   ||| |||||||| ||||||||||||||||||    
T  49768888 agagaaagttgtcaaaaaattgttgcaaaatggatgtacaaatatcatttctctttt 49768944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 51224857 - 51224909
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||||||| ||||||  ||| ||| |||| ||||||||||||||    
T  51224857 agagaaagttgtcaaaaagttgtagcaaaatggttgtacaaatatcatttctc 51224909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 51296208 - 51296264
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctttt 70  Q
    ||||||||||||||||| |||||   ||||||  |||| ||||||||||||||||||    
T  51296208 agagaaagttgtcaaaaagttgtcataaagtgattgtacaaatatcatttctctttt 51296264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 52392248 - 52392296
Alignment:
Q  18 aaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||| |||||   |||||||||||| ||||||||||||||    
T  52392248 aaagttgtcaaaaagttgtcacaaagtggatgtacaaatatcatttctc 52392296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 55609184 - 55609239
Alignment:
Q  14 agagaaagttgtca-aaatgttgtacaaaagtggatgtagaaatatcatttctcttt 69  Q
    |||||||||||||| ||| ||||||||||| ||| |||| |||||||||||||||||    
T  55609184 agagaaagttgtcacaaaagttgtacaaaa-tggttgtacaaatatcatttctcttt 55609239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 36376868 - 36376920
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  36376868 agagaaagttgtcaaaatgttgtacaaaagtggttgtacaaatatcatttctc 36376920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 5455472 - 5455524
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||||||| |||||   |||||||||||| ||||||||||||||    
T  5455472 agagaaagttgtcaaaaggttgtcacaaagtggatgtacaaatatcatttctc 5455524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 6851678 - 6851733
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctcttt 69  Q
    ||||||||||||||||| ||||||  ||| | |||||| |||||||||||||||||    
T  6851678 agagaaagttgtcaaaaagttgtagcaaaatagatgtacaaatatcatttctcttt 6851733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 7498010 - 7498065
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctcttt 69  Q
    ||||||||||||||||| ||||||  ||| ||| |||| |||||||||||||||||    
T  7498010 agagaaagttgtcaaaaagttgtaataaaatggttgtacaaatatcatttctcttt 7498065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 30340045 - 30339990
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctcttt 69  Q
    ||||||||||||  ||| ||||||||||| ||| |||| |||||||||||||||||    
T  30340045 agagaaagttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctcttt 30339990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 32750047 - 32749996
Alignment:
Q  17 gaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctt 68  Q
    |||||||||||||| |||||  |||||||| |||| ||||||||||||||||    
T  32750047 gaaagttgtcaaaaagttgtgaaaaagtggttgtacaaatatcatttctctt 32749996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 11229340 - 11229394
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctt 68  Q
    ||||||||||||||| | |||||   |||||||||||| ||||||||||||||||    
T  11229340 agagaaagttgtcaagaagttgtcacaaagtggatgtacaaatatcatttctctt 11229394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 42251939 - 42251993
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctt 68  Q
    |||||||||| |||||| ||||||| ||||||  |||| ||||||||||||||||    
T  42251939 agagaaagttatcaaaaagttgtactaaagtgattgtacaaatatcatttctctt 42251993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 42665831 - 42665885
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctt 68  Q
    ||||||||||||||||| ||||||  ||||||  |||| ||||||||||||||||    
T  42665831 agagaaagttgtcaaaaagttgtaataaagtgattgtacaaatatcatttctctt 42665885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 546404 - 546457
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctct 67  Q
    |||||||||||| |||| ||||||  ||||||| |||| |||||||||||||||    
T  546404 agagaaagttgttaaaaagttgtaataaagtggttgtacaaatatcatttctct 546457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 1889199 - 1889143
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctttt 70  Q
    |||||||||||||||||  ||||   ||||||| |||| ||||||||||||||||||    
T  1889199 agagaaagttgtcaaaaaattgtcagaaagtggttgtacaaatatcatttctctttt 1889143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 4738591 - 4738647
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctttt 70  Q
    |||| |||||||||||| |||||   ||||||| |||| ||||||||||||||||||    
T  4738591 agaggaagttgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctctttt 4738647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 34249632 - 34249580
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||||||| |||||   ||||||| |||| ||||||||||||||    
T  34249632 agagaaagttgtcaaaaagttgtgagaaagtggttgtacaaatatcatttctc 34249580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 42554828 - 42554776
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    |||||||||||| |||| ||||||  ||||||| |||| ||||||||||||||    
T  42554828 agagaaagttgtaaaaaagttgtaataaagtggttgtacaaatatcatttctc 42554776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 43650568 - 43650620
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||||||| ||||||  ||||||  |||| ||||||||||||||    
T  43650568 agagaaagttgtcaaaaagttgtattaaagtgattgtacaaatatcatttctc 43650620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 28473564 - 28473620
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctttt 70  Q
    |||||||||| ||||||| |||||||||||||| |||| ||||||||||||||||||    
T  28473564 agagaaagttatcaaaatattgtacaaaagtggttgtacaaatatcatttctctttt 28473620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 35633988 - 35634041
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctct 67  Q
    ||||||||||||||||| |||||   ||||||| ||||||||||||||||||||    
T  35633988 agagaaagttgtcaaaaagttgtcagaaagtggttgtagaaatatcatttctct 35634041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 40102075 - 40102022
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctct 67  Q
    ||||||||||||||||| |||||  |||||||| |||| |||||||||||||||    
T  40102075 agagaaagttgtcaaaaagttgtgaaaaagtggttgtacaaatatcatttctct 40102022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 27300398 - 27300334
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctcttttctaaaaca 78  Q
    ||||||||||||  ||| ||||||||||| ||| |||| |||||||||||||| ||| |||||||    
T  27300398 agagaaagttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctcatttttaaaaca 27300334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 45101448 - 45101392
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctttt 70  Q
    ||||||||||||||||| |||||   ||||||| |||| ||||||||||||||||||    
T  45101448 agagaaagttgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctctttt 45101392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 13924056 - 13924014
Alignment:
Q  32 gttgtacaaaagtggatgtagaaatatcatttctcttttctaa 74  Q
    ||||||||||| ||| |||| ||||||||||||||||||||||    
T  13924056 gttgtacaaaaatggttgtacaaatatcatttctcttttctaa 13924014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 21418611 - 21418665
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctt 68  Q
    ||||||||||||||||| |||||   ||||||| |||| ||||||||||||||||    
T  21418611 agagaaagttgtcaaaaggttgtcagaaagtggttgtacaaatatcatttctctt 21418665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 34996379 - 34996433
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctt 68  Q
    |||||||||||||||||  |||||  ||||||| |||| ||||||||||||||||    
T  34996379 agagaaagttgtcaaaaaattgtaataaagtggttgtacaaatatcatttctctt 34996433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 6105455 - 6105504
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcattt 63  Q
    ||||||||||||||||| |||||| |||| ||| |||| |||||||||||    
T  6105455 agagaaagttgtcaaaaagttgtaaaaaaatggttgtacaaatatcattt 6105504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 7279978 - 7280027
Alignment:
Q  18 aaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctct 67  Q
    |||||||| ||||||||||   |||||||||||| |||||||||||||||    
T  7279978 aaagttgttaaaatgttgtcacaaagtggatgtacaaatatcatttctct 7280027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 3756953 - 3756905
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatt 62  Q
    ||||||||||||||||| ||||||  ||||||| |||| ||||||||||    
T  3756953 agagaaagttgtcaaaaagttgtaataaagtggttgtacaaatatcatt 3756905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 7678784 - 7678728
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctttt 70  Q
    ||||||| |||||| || |||||  |||||||| |||| ||||||||||||||||||    
T  7678784 agagaaaattgtcacaaagttgtcaaaaagtggttgtacaaatatcatttctctttt 7678728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 12659104 - 12659052
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||||||| |||||  |||| ||| |||| ||||||||||||||    
T  12659104 agagaaagttgtcaaaaagttgttaaaaattggttgtacaaatatcatttctc 12659052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 21649187 - 21649239
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||  ||| ||||||||||| ||| |||| ||||||||||||||    
T  21649187 agagaaagttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctc 21649239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 27630949 - 27630893
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctttt 70  Q
    |||||||||||||||||  ||||   ||| |||||||| ||||||||||||||||||    
T  27630949 agagaaagttgtcaaaaaattgtcataaaatggatgtacaaatatcatttctctttt 27630893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 29509318 - 29509266
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||||||| ||||||  ||| ||| |||| ||||||||||||||    
T  29509318 agagaaagttgtcaaaaagttgtagcaaaatggttgtacaaatatcatttctc 29509266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 23633342 - 23633399
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctcttttc 71  Q
    ||||||||||||||||| ||| ||  ||||||| ||||||||||||||||||||||||    
T  23633342 agagaaagttgtcaaaaagttataataaagtggttgtagaaatatcatttctcttttc 23633399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 18792451 - 18792503
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    |||||||||||| |||| |||||  ||||||||||||||| ||||||||||||    
T  18792451 agagaaagttgttaaaaagttgtcaaaaagtggatgtagatatatcatttctc 18792503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 3821430 - 3821376
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctt 68  Q
    |||||||||||||||||  |||||  ||||||| |||| ||||||||||||||||    
T  3821430 agagaaagttgtcaaaaaattgtaataaagtggttgtacaaatatcatttctctt 3821376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 8778891 - 8778945
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctt 68  Q
    ||||||||||||||||| |||||  |||| ||| |||| ||||||||||||||||    
T  8778891 agagaaagttgtcaaaaagttgttaaaaaatggttgtacaaatatcatttctctt 8778945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 19789095 - 19789149
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctt 68  Q
    ||||||||||||||||| ||||||  ||| ||| |||| ||||||||||||||||    
T  19789095 agagaaagttgtcaaaaagttgtaataaaatggttgtacaaatatcatttctctt 19789149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 28965859 - 28965913
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctt 68  Q
    ||||||||||||||||| ||||||  ||| ||| |||| ||||||||||||||||    
T  28965859 agagaaagttgtcaaaaagttgtaacaaaatggttgtacaaatatcatttctctt 28965913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 29383609 - 29383555
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctt 68  Q
    ||||||||||||||||| |||||   ||||||| |||| ||||||||||||||||    
T  29383609 agagaaagttgtcaaaaagttgtcagaaagtggttgtacaaatatcatttctctt 29383555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 2165326 - 2165366
Alignment:
Q  32 gttgtacaaaagtggatgtagaaatatcatttctcttttct 72  Q
    ||||||||||| ||| |||| ||||||||||||||||||||    
T  2165326 gttgtacaaaaatggttgtacaaatatcatttctcttttct 2165366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 2176959 - 2176999
Alignment:
Q  32 gttgtacaaaagtggatgtagaaatatcatttctcttttct 72  Q
    ||||||||||| ||| |||| ||||||||||||||||||||    
T  2176959 gttgtacaaaaatggttgtacaaatatcatttctcttttct 2176999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 8395394 - 8395342
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||||||| |||||   ||||||| |||| ||||||||||||||    
T  8395394 agagaaagttgtcaaaaagttgtgagaaagtggttgtacaaatatcatttctc 8395342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 25924883 - 25924935
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||||||| ||||||  ||| ||| |||| ||||||||||||||    
T  25924883 agagaaagttgtcaaaaagttgtagcaaaatggttgtacaaatatcatttctc 25924935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 5378679 - 5378619
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctcttttctaa 74  Q
    ||||||||||||||||| |||||| |||| ||| |||| |||||||||||||||| |||||    
T  5378679 agagaaagttgtcaaaaagttgtataaaaatggttgtacaaatatcatttctcttctctaa 5378619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 28824555 - 28824498
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctcttttc 71  Q
    ||||||||||||||||| |||||   ||||||| |||| |||||||||||||||||||    
T  28824555 agagaaagttgtcaaaaagttgtcagaaagtggttgtacaaatatcatttctcttttc 28824498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 34349046 - 34349097
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttct 65  Q
    ||||||| ||||||||| ||||||||||| ||| |||| |||||||||||||    
T  34349046 agagaaaattgtcaaaaagttgtacaaaaatggttgtacaaatatcatttct 34349097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 24267666 - 24267720
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctt 68  Q
    ||||||||||||| ||| |||||  ||||||||||||| | ||||||||||||||    
T  24267666 agagaaagttgtctaaaagttgtcaaaaagtggatgtacatatatcatttctctt 24267720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 48522204 - 48522154
Alignment:
Q  18 aaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctt 68  Q
    ||||||||| ||| ||||||||||| ||| |||| ||||||||||||||||    
T  48522204 aaagttgtctaaaagttgtacaaaaatggttgtacaaatatcatttctctt 48522154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 40842457 - 40842405
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    |||||||||||||||||  ||||   |||||||||||| ||||||||||||||    
T  40842457 agagaaagttgtcaaaagattgtcacaaagtggatgtacaaatatcatttctc 40842405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 47905135 - 47905191
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctttt 70  Q
    ||||||||||||| |||| ||||  |||| ||| |||| ||||||||||||||||||    
T  47905135 agagaaagttgtctaaatattgtcaaaaaatggttgtacaaatatcatttctctttt 47905191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 48866949 - 48867001
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||||||| |||||   ||||||| |||| ||||||||||||||    
T  48866949 agagaaagttgtcaaaaagttgtcacaaagtggctgtacaaatatcatttctc 48867001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 5340151 - 5340100
Alignment:
Q  16 agaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctct 67  Q
    |||||||||||||||||| |||  ||||||| ||||||||||||||||||||    
T  5340151 agaaagttgtcaaaatgtagtaataaagtggttgtagaaatatcatttctct 5340100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 43900776 - 43900829
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctct 67  Q
    ||||||||||||||||| ||||||  ||||||| |||| |||||||||||||||    
T  43900776 agagaaagttgtcaaaaagttgtaataaagtggttgtacaaatatcatttctct 43900829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 44334820 - 44334873
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctct 67  Q
    ||||||||||||||||| ||||||  ||||||| |||| |||||||||||||||    
T  44334820 agagaaagttgtcaaaaagttgtaataaagtggttgtacaaatatcatttctct 44334873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 46003757 - 46003704
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctct 67  Q
    |||||||||||||||||  |||||  |||||||||||| |||||||||||||||    
T  46003757 agagaaagttgtcaaaagattgtaagaaagtggatgtacaaatatcatttctct 46003704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 22813124 - 22813069
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctcttt 69  Q
    ||||||||||||||||| |||||   ||||||| |||| |||||||||||||||||    
T  22813124 agagaaagttgtcaaaaagttgtcagaaagtggttgtacaaatatcatttctcttt 22813069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 26279936 - 26279881
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctcttt 69  Q
    ||||||||||||||||| |||||   ||||||| |||| |||||||||||||||||    
T  26279936 agagaaagttgtcaaaaagttgtcagaaagtggttgtacaaatatcatttctcttt 26279881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 1901945 - 1902001
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctttt 70  Q
    ||||||||||||| ||| |||||   ||||||| |||| ||||||||||||||||||    
T  1901945 agagaaagttgtctaaaagttgtcacaaagtggttgtacaaatatcatttctctttt 1902001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 1911391 - 1911447
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctttt 70  Q
    ||||||||||||| ||| |||||   ||||||| |||| ||||||||||||||||||    
T  1911391 agagaaagttgtctaaaagttgtcacaaagtggttgtacaaatatcatttctctttt 1911447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 5398970 - 5398914
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctttt 70  Q
    |||||||||||||||||  ||||   ||||||| |||| ||||||||||||||||||    
T  5398970 agagaaagttgtcaaaaaattgtcacaaagtggttgtacaaatatcatttctctttt 5398914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 8066407 - 8066355
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||||||| |||||   ||||||| |||| ||||||||||||||    
T  8066407 agagaaagttgtcaaaaagttgtgagaaagtggttgtacaaatatcatttctc 8066355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 16479684 - 16479629
Alignment:
Q  14 agagaaagttgtca-aaatgttgtacaaaagtggatgtagaaatatcatttctcttt 69  Q
    |||||||||||||| ||| ||||||||||| ||| |||| |||||||||||||||||    
T  16479684 agagaaagttgtcacaaaagttgtacaaaa-tggttgtacaaatatcatttctcttt 16479629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 32457774 - 32457826
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    |||||||||||||| || |||||  |||||||| |||| ||||||||||||||    
T  32457774 agagaaagttgtcacaaagttgtcaaaaagtggttgtacaaatatcatttctc 32457826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 37215252 - 37215304
Alignment:
Q  16 agaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctt 68  Q
    |||||||||||||||  |||||  ||||||| |||| ||||||||||||||||    
T  37215252 agaaagttgtcaaaaaattgtaagaaagtggttgtataaatatcatttctctt 37215304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 37303093 - 37303145
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||||||| |||||   ||||||| |||| ||||||||||||||    
T  37303093 agagaaagttgtcaaaaagttgtgagaaagtggttgtacaaatatcatttctc 37303145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 41877740 - 41877688
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||||||| ||||||  ||| ||| |||| ||||||||||||||    
T  41877740 agagaaagttgtcaaaaagttgtagcaaaatggttgtacaaatatcatttctc 41877688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 11690 - 11638
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    |||||||||||| |||| |||||  ||||||||||||||| ||||||||||||    
T  11690 agagaaagttgttaaaaagttgtcaaaaagtggatgtagatatatcatttctc 11638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 199318 - 199262
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctttt 70  Q
    |||||||||||||||||  |||||  ||||||| |||| ||||||||||||||||||    
T  199318 agagaaagttgtcaaaaaattgtaataaagtggttgtacaaatatcatttctctttt 199262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 34952425 - 34952477
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    |||||||||||| |||||||||||  ||||||| |||| ||||||||||||||    
T  34952425 agagaaagttgtgaaaatgttgtaataaagtggttgtacaaatatcatttctc 34952477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 3031886 - 3031832
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctt 68  Q
    ||||||||||||  ||| ||||||||||| ||| |||| ||||||||||||||||    
T  3031886 agagaaagttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctctt 3031832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 12203192 - 12203150
Alignment:
Q  32 gttgtacaaaagtggatgtagaaatatcatttctcttttctaa 74  Q
    ||||||||||| ||| |||| ||||||||||||||||||||||    
T  12203192 gttgtacaaaaatggttgtacaaatatcatttctcttttctaa 12203150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 14522983 - 14523037
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctt 68  Q
    ||||||| |||| |||| ||||||||||| ||| |||| ||||||||||||||||    
T  14522983 agagaaaattgtaaaaaagttgtacaaaaatggttgtacaaatatcatttctctt 14523037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 20591493 - 20591547
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctt 68  Q
    |||||||||||||||||  ||||  ||||||||||||| | ||||||||||||||    
T  20591493 agagaaagttgtcaaaaaattgtcaaaaagtggatgtacatatatcatttctctt 20591547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 39191853 - 39191906
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctct 67  Q
    |||||||||||||||||  ||||  ||||||||||||| | |||||||||||||    
T  39191853 agagaaagttgtcaaaaaattgttaaaaagtggatgtacatatatcatttctct 39191906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 3155054 - 3154998
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctttt 70  Q
    |||||||||| |||||| |||||  |||||||| | || ||||||||||||||||||    
T  3155054 agagaaagttatcaaaaggttgtcaaaaagtggttctataaatatcatttctctttt 3154998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 10232551 - 10232495
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctttt 70  Q
    ||||||||||||||||| ||| |   ||||| |||||| ||||||||||||||||||    
T  10232551 agagaaagttgtcaaaaggttatcacaaagttgatgtacaaatatcatttctctttt 10232495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 12661966 - 12662018
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    |||||||||||||||||  ||||   |||||||||||| ||||||||||||||    
T  12661966 agagaaagttgtcaaaaaattgtcacaaagtggatgtacaaatatcatttctc 12662018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 34381064 - 34381012
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||||||| |||||   ||||||| |||| ||||||||||||||    
T  34381064 agagaaagttgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctc 34381012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 39032623 - 39032679
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctttt 70  Q
    |||||| |||||  ||| ||||||||||| ||| |||| ||||||||||||||||||    
T  39032623 agagaaggttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctctttt 39032679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 39595324 - 39595272
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||||||| |||||   ||||||| |||| ||||||||||||||    
T  39595324 agagaaagttgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctc 39595272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 24611896 - 24611844
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||||||| |||||  ||||||||||||| | ||||||||||||    
T  24611896 agagaaagttgtcaaaaagttgttaaaaagtggatgtacatatatcatttctc 24611844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 11121526 - 11121484
Alignment:
Q  32 gttgtacaaaagtggatgtagaaatatcatttctcttttctaa 74  Q
    ||||||||||||| | |||| ||||||||||||||||||||||    
T  11121526 gttgtacaaaagttgttgtacaaatatcatttctcttttctaa 11121484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 43196108 - 43196162
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctt 68  Q
    ||||||| ||||||||| ||||||  ||| |||||||| ||||||||||||||||    
T  43196108 agagaaaattgtcaaaaagttgtagcaaaatggatgtacaaatatcatttctctt 43196162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 44112506 - 44112452
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctt 68  Q
    |||||||||||||||||  |||||  ||||||| |||| ||||||||||||||||    
T  44112506 agagaaagttgtcaaaaaattgtaataaagtggttgtacaaatatcatttctctt 44112452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 50226898 - 50226952
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctt 68  Q
    ||||||||||||||||| |||||   ||||||| |||| ||||||||||||||||    
T  50226898 agagaaagttgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctctt 50226952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 4604472 - 4604419
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctct 67  Q
    ||||| |||||||||||||||||  |||||||| |||  |||||||||||||||    
T  4604472 agagagagttgtcaaaatgttgtctaaaagtggttgttcaaatatcatttctct 4604419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 44641922 - 44641975
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctct 67  Q
    |||||||||||||||||  |||||  ||||||| |||| |||||||||||||||    
T  44641922 agagaaagttgtcaaaaaattgtaataaagtggttgtacaaatatcatttctct 44641975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 49189229 - 49189282
Alignment:
Q  16 agaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctcttt 69  Q
    ||||||||||||||| ||||||  ||| ||| |||| |||||||||||||||||    
T  49189229 agaaagttgtcaaaaagttgtagcaaaatggttgtacaaatatcatttctcttt 49189282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 366709 - 366653
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctctttt 70  Q
    ||||||||||||||||| ||| |   ||||||| |||| ||||||||||||||||||    
T  366709 agagaaagttgtcaaaaagttatcagaaagtggttgtataaatatcatttctctttt 366653  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 8464532 - 8464584
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||| ||||||||| ||||||  ||||||| |||| ||||||||||||||    
T  8464532 agagaaaattgtcaaaaagttgtaataaagtggttgtacaaatatcatttctc 8464584  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 30530418 - 30530470
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    |||||||||||| |||| ||||||  ||||||| |||| ||||||||||||||    
T  30530418 agagaaagttgttaaaaagttgtaataaagtggttgtacaaatatcatttctc 30530470  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 33422238 - 33422290
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||||||| ||||||  ||||||| |||| | ||||||||||||    
T  33422238 agagaaagttgtcaaaaagttgtaataaagtggttgtacagatatcatttctc 33422290  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 34002339 - 34002391
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    |||||||||||| |||| ||||||  ||||||| |||| ||||||||||||||    
T  34002339 agagaaagttgttaaaaagttgtaataaagtggttgtacaaatatcatttctc 34002391  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 39010866 - 39010814
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||||||| |||||   ||||||| |||| ||||||||||||||    
T  39010866 agagaaagttgtcaaaaagttgtgagaaagtggctgtacaaatatcatttctc 39010814  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 219685 - 219738
Alignment:
Q  16 agaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctcttt 69  Q
    ||||||||||||||| |||||   ||||||| |||| |||||||||||||||||    
T  219685 agaaagttgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctcttt 219738  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 190901 - 190958
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctcttttc 71  Q
    |||||||||||||||||  || |   |||||||||||||| |||||||||||||||||    
T  190901 agagaaagttgtcaaaaaattatcataaagtggatgtagacatatcatttctcttttc 190958  T

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Target: scaffold0286 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 17083 - 17043
Alignment:
Q  32 gttgtacaaaagtggatgtagaaatatcatttctcttttct 72  Q
    ||||||||||| ||| |||| ||||||||||||||||||||    
T  17083 gttgtacaaaaatggttgtacaaatatcatttctcttttct 17043  T

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Target: scaffold0172 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 17027 - 16975
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||||||| ||||||  ||| ||| |||| ||||||||||||||    
T  17027 agagaaagttgtcaaaaagttgtagtaaaatggttgtacaaatatcatttctc 16975  T

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Target: scaffold0111 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 36885 - 36937
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||||||| ||||||  ||||||| |||  ||||||||||||||    
T  36885 agagaaagttgtcaaaaagttgtaataaagtggttgtgcaaatatcatttctc 36937  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 155958 - 155906
Alignment:
Q  14 agagaaagttgtcaaaatgttgtacaaaagtggatgtagaaatatcatttctc 66  Q
    ||||||||||||||||| ||||||  ||| ||| |||| ||||||||||||||    
T  155958 agagaaagttgtcaaaaagttgtaataaaatggttgtacaaatatcatttctc 155906  T

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