View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18802_low_14 (Length: 229)
Name: NF18802_low_14
Description: NF18802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18802_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 10323032 - 10323233
Alignment:
| Q |
17 |
agaattaaaacaggaaaggaaacaataaccgcacagtagcagaactggaaaaacgacatccagacggaccacttatctgcttcagctggactccttgagc |
116 |
Q |
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| T |
10323032 |
agaattaaaacaggaaaggaaacaataaccgcacagtagcagaactggaaaaatgacatccagacggaccacttatctgcttcagctggactccttgagc |
10323131 |
T |
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| Q |
117 |
ttatcaagggctcccctttaaatggcaaagacttcattaccatgacaacatcttgatttcatccacaatatccttacaatctctagccaaattgttgatg |
216 |
Q |
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| T |
10323132 |
ttatcaagggctcccctttaaatggcaaagacttcattaccatgacaacatcttgatttcatccacaatatccttacaatctctagccaaattgttgatg |
10323231 |
T |
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| Q |
217 |
at |
218 |
Q |
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|| |
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| T |
10323232 |
at |
10323233 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 24524684 - 24524777
Alignment:
| Q |
121 |
caagggctcccctttaaatggcaaagacttcattaccatgacaacatcttgatttcatccacaatatccttacaatctctagccaaattgttga |
214 |
Q |
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| T |
24524684 |
caagggctcccctttaagcgggtaagactccatttcaaagataacaccttgatctcatccacaatatcctcacaatctctagccaaattcttga |
24524777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 24524593 - 24524640
Alignment:
| Q |
64 |
gaaaaacgacatccagacggaccacttatctgcttcagctggactcct |
111 |
Q |
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| T |
24524593 |
gaaaaaagacatccagacggaccactgatctgctgcagctggactcct |
24524640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 9130830 - 9130923
Alignment:
| Q |
121 |
caagggctcccctttaaatggcaaagacttcattaccatgacaacatcttgatttcatccacaatatccttacaatctctagccaaattgttga |
214 |
Q |
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| T |
9130830 |
caagggctcccctttaagcgggtaagactccatttcaaagataacaccttgatctcatccacaatatcctcacaatctctagccaaattcttga |
9130923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 9122643 - 9122690
Alignment:
| Q |
64 |
gaaaaacgacatccagacggaccacttatctgcttcagctggactcct |
111 |
Q |
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|||||| ||||||||||||||||||| ||||||| ||||| ||||||| |
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| T |
9122643 |
gaaaaaagacatccagacggaccactgatctgctgcagctcgactcct |
9122690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 9130739 - 9130786
Alignment:
| Q |
64 |
gaaaaacgacatccagacggaccacttatctgcttcagctggactcct |
111 |
Q |
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|||||| ||||||||||||||||||| ||||||| ||||| ||||||| |
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| T |
9130739 |
gaaaaaagacatccagacggaccactgatctgctgcagctagactcct |
9130786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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