View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18802_low_15 (Length: 222)

Name: NF18802_low_15
Description: NF18802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18802_low_15
NF18802_low_15
[»] chr5 (2 HSPs)
chr5 (1-104)||(32796219-32796322)
chr5 (18-104)||(19667947-19668033)
[»] chr6 (2 HSPs)
chr6 (1-102)||(2922539-2922640)
chr6 (4-91)||(27413975-27414062)
[»] chr1 (1 HSPs)
chr1 (7-104)||(22827722-22827819)
[»] scaffold0003 (1 HSPs)
scaffold0003 (4-91)||(79063-79150)


Alignment Details
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 32796322 - 32796219
Alignment:
Q  1 tcgcctagacattcccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacggcgcattggactgcacttaaaagagtgctcagacacttg 100  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||  ||||    
T  32796322 tcgcccagacattgccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacagcgcattggactgcactcaaaagagtgctcagatgcttg 32796223  T
Q  101 gcgg 104  Q
    ||||    
T  32796222 gcgg 32796219  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 19667947 - 19668033
Alignment:
Q  18 tcagcacaaacaaactcgcccaattcatgcagaatcccagaacggcgcattggactgcacttaaaagagtgctcagacacttggcgg 104  Q
    ||||||||| |||||  |||||||||||||||||||||||||||||||||||||| ||| | |||||||| |||||| |||||||||    
T  19667947 tcagcacaagcaaacctgcccaattcatgcagaatcccagaacggcgcattggaccgcaatcaaaagagttctcagatacttggcgg 19668033  T

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Target: chr6 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 2922640 - 2922539
Alignment:
Q  1 tcgcctagacattcccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacggcgcattggactgcacttaaaagagtgctcagacacttg 100  Q
    ||||||||||||| || ||| ||||||||||||| ||||||||||||| || |||| ||||||||||||||||||||| ||||||||||||||| |||||    
T  2922640 tcgcctagacattgccttcatcacaaacaaactcacccaattcatgcaaaaccccataacggcgcattggactgcactcaaaagagtgctcagatacttg 2922541  T
Q  101 gc 102  Q
    ||    
T  2922540 gc 2922539  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 27414062 - 27413975
Alignment:
Q  4 cctagacattcccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacggcgcattggactgcacttaaaagagtgctc 91  Q
    |||||||||| || ||| ||||||||||||||||||||||||||| ||  ||||||||| | ||||||||||||| ||||||||||||    
T  27414062 cctagacattgccttcaacacaaacaaactcgcccaattcatgcaaaactccagaacggtgtattggactgcactcaaaagagtgctc 27413975  T

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Target: chr1 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 22827819 - 22827722
Alignment:
Q  7 agacattcccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacggcgcattggactgcacttaaaagagtgctcagacacttggcgg 104  Q
    ||||||| || ||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||||| | |||||||||    
T  22827819 agacattgccttcagcacaaacaaactcgcgcaattcatgcaaaaccccagaacggcgcattggactgcactcaaaagagtgctcaaatacttggcgg 22827722  T

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Target: scaffold0003 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 79063 - 79150
Alignment:
Q  4 cctagacattcccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacggcgcattggactgcacttaaaagagtgctc 91  Q
    |||||||||| || ||| ||||||||||||||||||||||||||| ||  ||||||||| | ||||||||||||| ||||||||||||    
T  79063 cctagacattgccttcaacacaaacaaactcgcccaattcatgcaaaactccagaacggtgtattggactgcactcaaaagagtgctc 79150  T

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