View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18802_low_3 (Length: 540)
Name: NF18802_low_3
Description: NF18802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18802_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 14 - 532
Target Start/End: Complemental strand, 41638191 - 41637664
Alignment:
| Q |
14 |
ataagcacttatatgtacatttatagtttagttgtttacccaaatagggtctaagtataatcaagattaactctttctcaatgtattctaagtgatctac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41638191 |
ataagcacttatatgtacatttatagtttagttgtttacccaaatagggtctaagtataatcaagattaactctttctcaatgtattctaagtgatctac |
41638092 |
T |
|
| Q |
114 |
aaaacatgtaatgataagatagtgagaaatgnnnnnnn---------ctgaaacagtaactagacctctgaccaccagaacggccaccaaaaacaaacat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41638091 |
aaaacatgtaatgataagatagtgagaaataaaaaaaataaaaaaaactgaaacagtaactagacctctgaccaccagaacggccaccaaaaacaaacat |
41637992 |
T |
|
| Q |
205 |
atgacaatcaatagcaacagcaacatgaaatgctcgtggagtgggacccacatgtccatctgaatcacttccagtacactccggttgataccatagctta |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41637991 |
atgacaatcaatagcaacagcaacatgaaatgctcgtggagtgggacccacatgtccatctgaatcacttccagtacactccggttgataccatagctta |
41637892 |
T |
|
| Q |
305 |
gcctctgaaaatttcaacattacaaaacgaatcaaattccaaattttgacaacaacccacaaaagaagagagaaaagggtcactaaccaatatcatagac |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41637891 |
gcctctgaaaatttcaacattacaaaacgaatcaaattccaaattttgacaacaacccacaaaagaagagagaaaagggtcactaaccaatatcatagac |
41637792 |
T |
|
| Q |
405 |
aagaatatcagtgagaaattttttgtcgacaagaccaccgaagatgacaaccttggattttccaatattaacagcggaatgaccactacgaggttgagga |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41637791 |
aagaatatcagtgagaaattttttgtcgacaagaccaccgaagacgacaaccttggattttccaatattaacagcggaatgaccactacgaggttgagga |
41637692 |
T |
|
| Q |
505 |
ggtgttcctgcgtaatcagatgatgatg |
532 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
41637691 |
ggtgttcctgcgtaatcagatgatgatg |
41637664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University