View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18802_low_4 (Length: 532)
Name: NF18802_low_4
Description: NF18802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18802_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 17 - 516
Target Start/End: Complemental strand, 10640352 - 10639849
Alignment:
| Q |
17 |
ttacaagtttgattgatgtgtatgtataaaatgaaatgtaaaccaactatttataggcaaagctaatccaaatgacaagaaacatcgctgcctacaaaac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10640352 |
ttacaagtttgattgatgtgtatgtataaaatgaaatgtaaaccaagtatttataggcaaagccaatccaaatgacaagaaacatcgcggcctacaaaac |
10640253 |
T |
|
| Q |
117 |
ttagtcatgactcgcattattcaactgtt--------------------ttttacttatttgacttactcttacactttcacaatcttcgtgagaccctt |
196 |
Q |
| |
|
|||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10640252 |
ttagtcatgacttgcattattccactgttcctatggggtggtgcatattttttacttatttgacttactcttacactttcacaaccttcgtgagaccctt |
10640153 |
T |
|
| Q |
197 |
tggactagagaatgactaacctaactcgttttcagtcgttcttaattcaactacttaaacatcgtccaaacctaatttaattgttggtcgttctcaacta |
296 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10640152 |
tgggctagagaataactaacctaactcgttttcagtcgttcttaattcaactacctaaacatcatccaaacctaatttaattgttggtcgttctcaacta |
10640053 |
T |
|
| Q |
297 |
acaacttagattatttttaggtgtaaacaaagtactaattaattcatgcattgcctctcctaaaaacccttccctccacttatggactcacaaaccgtgt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
10640052 |
acaacttagattatttttaggtgtaaacaaagtac----------------tgcctctcctaaaaacccttcccaccacttagggactcacaaaccgtgt |
10639969 |
T |
|
| Q |
397 |
tgatagaacccatagtatattaaattaattattttaaaagaaaagtttacattctttccaatagtagatattaaattgtacaagaagtaaccatcaagca |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10639968 |
tgatagaacccatagtatattaaattaattattttaaaagaaaagtttacatgctttccaatagtagatattaaattgtacaagaagtaaccatcaagca |
10639869 |
T |
|
| Q |
497 |
tcaagcactaaggaataaat |
516 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
10639868 |
tcaagcactaaggaataaat |
10639849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 326
Target Start/End: Original strand, 46894320 - 46894353
Alignment:
| Q |
293 |
actaacaacttagattatttttaggtgtaaacaa |
326 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
46894320 |
actaacaacttagattatttttatgtgtaaacaa |
46894353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University