View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18802_low_5 (Length: 423)

Name: NF18802_low_5
Description: NF18802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18802_low_5
NF18802_low_5
[»] chr5 (3 HSPs)
chr5 (5-416)||(32795797-32796209)
chr5 (25-416)||(19670138-19670532)
chr5 (1-29)||(19668039-19668067)
[»] chr1 (1 HSPs)
chr1 (1-416)||(22827298-22827716)
[»] chr6 (6 HSPs)
chr6 (7-408)||(11678290-11678694)
chr6 (3-415)||(2922114-2922529)
chr6 (95-255)||(27413719-27413879)
chr6 (251-415)||(27340874-27341043)
chr6 (251-415)||(27401614-27401783)
chr6 (1-63)||(27413893-27413955)
[»] scaffold0003 (2 HSPs)
scaffold0003 (95-255)||(79246-79406)
scaffold0003 (1-63)||(79170-79232)


Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 5 - 416
Target Start/End: Complemental strand, 32796209 - 32795797
Alignment:
Q  5 acaaaggcgtcttcatctcgacgacagccccactaaatctccacgcctactcggatgcgatgagaaggcgacaaggatgattatatctccaccactggtt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  32796209 acaaaggcgtcttcatctcgacgacagccccactaaatctccacgcctactcggatgcagtgagaaggcgacaaggatgattatatctccaccactggtt 32796110  T
Q  105 atctgttatatcttggcagcacgcccatctcttggagctctcgaaaacaacgttttgttgctcgatctttcaaagaagcagaatataaagccttggctga 204  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32796109 atctgttatatcttggcagcacacccatctcttggagctcttgaaaacaacgttttgttgctcggtctttcaaagaagcagaatataaagccttggctga 32796010  T
Q  205 cacggcaagtgagctgctatgggtcctttccctattcactgaacttggccacactccaacaaccaatccagtcatctattgtgacaacctcggggcta-c 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  32796009 cacggcaagtgagctgctatgggtcctttccctattcactgaacttggccacactccaacaaccaatccagtcatctattgtgacaacctcggtgctacc 32795910  T
Q  304 caccttagcgctaatcctgtatttcactctcggacgaaacatatagccttagcctatcattttgtcagagaaaatgtccaacatggcaagtttcaagtat 403  Q
    || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32795909 catcttagcgctaatcctgtatttcactctcggatgaaacatatagccttagcctatcattttgtcagagaaaatgtccaacatggcaagtttcaagtat 32795810  T
Q  404 cctttgcttctac 416  Q
    |||||| ||||||    
T  32795809 cctttgtttctac 32795797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 25 - 416
Target Start/End: Original strand, 19670138 - 19670532
Alignment:
Q  25 acgacagccccactaaatctccacgcctactcggatgcga--tgagaaggcgacaaggatgattatatctccaccactggttatctgttatatcttggca 122  Q
    |||||||||||||||||||||||||||||||||||||||   |  | ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19670138 acgacagccccactaaatctccacgcctactcggatgcggacttggtaggcgacaaggatgattatatctccaccactagttatctgttatatcttggca 19670237  T
Q  123 gcacgcccatctcttggagctctcgaaaacaacgttttgttgctcgatctttcaaagaagcagaatataaagccttggctgacacggcaagtgagctgct 222  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||| || | ||||| ||||||||||||||||||||||| |||||||||||||    
T  19670238 gcacgcccatctcatggagctctcgaaaacaacgttctgttgctcgatcttccacaaaagcaaaatataaagccttggctgacacgacaagtgagctgct 19670337  T
Q  223 atgggtcctttccctattcactgaacttggccacactccaacaaccaatccagtcatctattgtgacaacctcggggcta-ccaccttagcgctaatcct 321  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||| | |||||||    
T  19670338 atgggtcctttccctattcactgaacttggccacactccaacagccaatccagtcatctattgtgacaacctcggtgctacccaccttagtgttaatcct 19670437  T
Q  322 gtatttcactctcggacgaaacatatagccttagcctatcattttgtcagagaaaatgtccaacatggcaagtttcaagtatcctttgcttctac 416  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||| |||||| |||| ||||||    
T  19670438 gtatttcactctcggatgaaacatatagccttaacctatcattttgtctgagaaaatgttcaacatggcaagtttcgagtatcatttgtttctac 19670532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 19668039 - 19668067
Alignment:
Q  1 tgtgacaaaggcgtcttcatctcgacgac 29  Q
    |||||||||||||||||||||||||||||    
T  19668039 tgtgacaaaggcgtcttcatctcgacgac 19668067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 22827716 - 22827298
Alignment:
Q  1 tgtgacaaaggcgtcttcatctcgacgacagccccactaaatctccacgcctactcggatgcga--tgagaaggcgacaaggatgattatatctccacca 98  Q
    |||||||||||| ||||||| || ||||| || ||| ||||||||||||||||||| ||||||   || | | ||||||| |||||||||||||||||||    
T  22827716 tgtgacaaaggcatcttcatttcaacgaccgctccattaaatctccacgcctactctgatgcggactgggcaagcgacaaagatgattatatctccacca 22827617  T
Q  99 ctggttatctgttatatcttggcagcacgcccatctcttggagctctcgaaaacaacgttttgttgctcgatctttcaaagaagcagaatataaagcctt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||| || |||||||||||||||||||||    
T  22827616 ctggttatctgttatatcttggcagcacgcccatctcttggagctgtcaaaaacaacgttttgttgctcgctcttccatagaagcagaatataaagcctt 22827517  T
Q  199 ggctgacacggcaagtgagctgctatgggtcctttccctattcactgaacttggccacactccaacaaccaatccagtcatctattgtgacaacctcggg 298  Q
    |||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  22827516 ggctgacacgacaagtgtgctgctatgggtcctttccctattcaatgaacttggccacactccaacaaccaatccagtcatttattgtgacaacctcggt 22827417  T
Q  299 gcta-ccaccttagcgctaatcctgtatttcactctcggacgaaacatatagccttagcctatcattttgtcagagaaaatgtccaacatggcaagtttc 397  Q
    |||| ||| ||||| ||||||||||||| ||||||||||| ||||||||||| |||| | || ||||||||| || ||||||| ||| ||||||||||||    
T  22827416 gctacccaacttagtgctaatcctgtatctcactctcggatgaaacatatagtcttaacttaccattttgtctgataaaatgttcaaaatggcaagtttc 22827317  T
Q  398 aagtatcctttgcttctac 416  Q
     ||||||||||| ||||||    
T  22827316 gagtatcctttgtttctac 22827298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 7 - 408
Target Start/End: Original strand, 11678290 - 11678694
Alignment:
Q  7 aaaggcgtcttcatctcgacgacagccccactaaatctccacgcctactcggatgc-ga-tgagaaggcgacaaggatgattatatctccaccactggtt 104  Q
    |||||| |||||||||| |||||||||||||||||| ||||||||||||| ||||| || || | | |||  |||||||||||||||||||||||| |||    
T  11678290 aaaggcttcttcatctcaacgacagccccactaaatatccacgcctactcagatgcagactgggcatgcggtaaggatgattatatctccaccactagtt 11678389  T
Q  105 atctgttatatcttggcagcacgcccatctcttggagctctcgaaaacaacgttttgttgctcgatctttcaaagaagcagaatataaagccttggctga 204  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||| |||||    
T  11678390 atctgttatatcttggcagcacacccatctcttggagctctcgaaaacaacgttttgttgctcgatcttccacagaagcagagtataaagccttagctga 11678489  T
Q  205 cacggcaagtgagctgctatgggtcctttccctattcactgaacttggccacactccaacaaccaatccagtcatctattgtgacaacctcggggctacc 304  Q
    || | | ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| ||||  ||||||||||| ||||||||  ||||||    
T  11678490 catgacgagtgagctgatatgggtcctttccttattcactgaacttggccacactccaacagccattccaaacatctattgtggcaacctcgatgctacc 11678589  T
Q  305 -accttagcgctaatcctgtatttcactctcggacgaaacatatagccttagcctatcattttgtcagagaaaatgtccaacatggcaagtttcaagtat 403  Q
     ||||||| | ||||||||||||| ||||||||| |||| |||||||||||||||||||||||||| || ||||||| |||||||||||||||| | |||    
T  11678590 taccttagtgttaatcctgtattttactctcggatgaaatatatagccttagcctatcattttgtccgaaaaaatgttcaacatggcaagtttcgactat 11678689  T
Q  404 ccttt 408  Q
    |||||    
T  11678690 ccttt 11678694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 3 - 415
Target Start/End: Complemental strand, 2922529 - 2922114
Alignment:
Q  3 tgacaaaggcgtcttcatctcgacgacagccccactaaatctccacgcctactcggatgc-ga-tgagaaggcgacaaggatgattatatctccaccact 100  Q
    |||||||||||||||||| |||||||| |||||| |||||||||| ||||||||  |||| || || | | |||||| ||||||||||||||||||||||    
T  2922529 tgacaaaggcgtcttcatttcgacgaccgccccattaaatctccatgcctactcaaatgcagactgggcaagcgacatggatgattatatctccaccact 2922430  T
Q  101 ggttatctgttatatcttggcagcacgcccatctcttggagctctcgaaaacaacgttttgttgctcgatctttcaaagaagcagaatataaagccttgg 200  Q
     ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||| | |||| || ||||||| |||||||||||||||    
T  2922429 agttatctgttatatcttggcagcacacccatctcttagagctctcgaaaacaacgttctgttgcttgctcttccatagaagcaaaatataaagccttgg 2922330  T
Q  201 ctgacacggcaagtgagctgctatgggtcctttccctattcactgaacttggccacactccaacaaccaatccagtcatctattgtgacaacctcggggc 300  Q
    || ||||||  |||||||| |||||||||||||||||||||| ||||||||| ||| |||||||| ||||||||||||||||||||||||||||| | ||    
T  2922329 ctaacacggagagtgagcttctatgggtcctttccctattcaatgaacttggtcaccctccaacagccaatccagtcatctattgtgacaacctcagtgc 2922230  T
Q  301 ta-ccaccttagcgctaatcctgtatttcactctcggacgaaacatatagccttagcctatcattttgtcagagaaaatgtccaacatggcaagtttcaa 399  Q
    || ||||||||| |||||||| |||||||||| | ||| ||||||||||||||||||||||||||||||| |||||||||| ||| |||| | ||||| |    
T  2922229 tacccaccttagtgctaatccagtatttcacttttggatgaaacatatagccttagcctatcattttgtccgagaaaatgtacaaaatggaatgtttcga 2922130  T
Q  400 gtatcctttgcttcta 415  Q
    |||||||||| |||||    
T  2922129 gtatcctttgtttcta 2922114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 95 - 255
Target Start/End: Complemental strand, 27413879 - 27413719
Alignment:
Q  95 accactggttatctgttatatcttggcagcacgcccatctcttggagctctcgaaaacaacgttttgttgctcgatctttcaaagaagcagaatataaag 194  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| ||||  | |||||||||||||||||    
T  27413879 accactggttatctattatatcttggcagcacgcccatctcttggagctctctaaaacaatgttctgttgctcgctcttctacagaagcagaatataaag 27413780  T
Q  195 ccttggctgacacggcaagtgagctgctatgggtcctttccctattcactgaacttggcca 255  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||| || |||||||    
T  27413779 ccttggctgacacggcgagtgagctgttatgggtcctttccctattcactaaatttggcca 27413719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 251 - 415
Target Start/End: Complemental strand, 27341043 - 27340874
Alignment:
Q  251 ggccacactccaacaaccaatccagtcatctattgtgacaacctcggggctac-----caccttagcgctaatcctgtatttcactctcggacgaaacat 345  Q
    |||||||||||| || ||||||||||||||||||||||||||||||| |||||     |||||||| |||||| |||||||||||||||||| |||||||    
T  27341043 ggccacactccaccatccaatccagtcatctattgtgacaacctcggtgctacgtacccaccttagtgctaattctgtatttcactctcggatgaaacat 27340944  T
Q  346 atagccttagcctatcattttgtcagagaaaatgtccaacatggcaagtttcaagtatcctttgcttcta 415  Q
    ||||||||||||||||||||| || |||||||||| | | |||||||||||| ||||||||||| |||||    
T  27340943 atagccttagcctatcattttttccgagaaaatgttcgaaatggcaagtttcgagtatcctttgtttcta 27340874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 251 - 415
Target Start/End: Complemental strand, 27401783 - 27401614
Alignment:
Q  251 ggccacactccaacaaccaatccagtcatctattgtgacaacctcggggctac-----caccttagcgctaatcctgtatttcactctcggacgaaacat 345  Q
    |||||||||||| || ||||||||||||||||||||||||||||||| |||||     |||||||| |||||| |||||||||||||||||| |||||||    
T  27401783 ggccacactccaccatccaatccagtcatctattgtgacaacctcggtgctacgtacccaccttagtgctaattctgtatttcactctcggatgaaacat 27401684  T
Q  346 atagccttagcctatcattttgtcagagaaaatgtccaacatggcaagtttcaagtatcctttgcttcta 415  Q
    ||||||||||||||||||||| || |||||||||| | | |||||||||||| ||||||||||| |||||    
T  27401683 atagccttagcctatcattttttccgagaaaatgttcgaaatggcaagtttcgagtatcctttgtttcta 27401614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 27413955 - 27413893
Alignment:
Q  1 tgtgacaaaggcgtcttcatctcgacgacagccccactaaatctccacgcctactcggatgcg 63  Q
    ||||||||||| |||||||| |||||||| | |||| |||||||||| |||||||| ||||||    
T  27413955 tgtgacaaaggtgtcttcatttcgacgaccgacccattaaatctccatgcctactcagatgcg 27413893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 95 - 255
Target Start/End: Original strand, 79246 - 79406
Alignment:
Q  95 accactggttatctgttatatcttggcagcacgcccatctcttggagctctcgaaaacaacgttttgttgctcgatctttcaaagaagcagaatataaag 194  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| ||||  | |||||||||||||||||    
T  79246 accactggttatctattatatcttggcagcacgcccatctcttggagctctctaaaacaatgttctgttgctcgctcttctacagaagcagaatataaag 79345  T
Q  195 ccttggctgacacggcaagtgagctgctatgggtcctttccctattcactgaacttggcca 255  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||| || |||||||    
T  79346 ccttggctgacacggcgagtgagctgttatgggtcctttccctattcactaaatttggcca 79406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 79170 - 79232
Alignment:
Q  1 tgtgacaaaggcgtcttcatctcgacgacagccccactaaatctccacgcctactcggatgcg 63  Q
    ||||||||||| |||||||| |||||||| | |||| |||||||||| |||||||| ||||||    
T  79170 tgtgacaaaggtgtcttcatttcgacgaccgacccattaaatctccatgcctactcagatgcg 79232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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