View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18802_low_7 (Length: 361)
Name: NF18802_low_7
Description: NF18802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18802_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 102 - 344
Target Start/End: Original strand, 32796457 - 32796699
Alignment:
| Q |
102 |
caccaacatgtagtatatgtttggtttttcggtgacaaaaattgattttgagaaattaactaatcttaaggtttttggttgtttatgctatgtttttact |
201 |
Q |
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| T |
32796457 |
caccaacatgtagtatatgtttggtttttcggtgacaaaaattgattttgagaaattaactaatctgaaggtttttggttgtttatgctatgtttttact |
32796556 |
T |
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| Q |
202 |
tttgtttcacatggttcaaaattttatattcatgaaagaaagtgtgtatgtttaggatataaacttggaacaaaaagatatcttctatatgatatacaaa |
301 |
Q |
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| T |
32796557 |
tttgtttcacatggttcaaaattttatattcatgcaagaaagtgtgtatttttaggatataaacttggaacaaaaagatatcttctatatgatatacaaa |
32796656 |
T |
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| Q |
302 |
acaaataaatatatcatagtttctaggaatgtgatctttgaag |
344 |
Q |
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| T |
32796657 |
acaaataaatatatcatagtttctaggaatgtgatctttgaag |
32796699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 153
Target Start/End: Original strand, 38335748 - 38335787
Alignment:
| Q |
114 |
gtatatgtttggtttttcggtgacaaaaattgattttgag |
153 |
Q |
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| T |
38335748 |
gtatatgtttggttcttcggtgacaagaattgattttgag |
38335787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 43025013 - 43024973
Alignment:
| Q |
112 |
tagtatatgtttggtttttcggtgacaaaaattgattttga |
152 |
Q |
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| T |
43025013 |
tagtgtatgtttgggtttgcggtgacaaaaattgattttga |
43024973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 16493043 - 16493003
Alignment:
| Q |
112 |
tagtatatgtttggtttttcggtgacaaaaattgattttga |
152 |
Q |
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|||||| ||||||||| |||||||| ||||||||||||||| |
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| T |
16493043 |
tagtatgtgtttggttcttcggtgaaaaaaattgattttga |
16493003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 646301 - 646265
Alignment:
| Q |
118 |
atgtttggtttttcggtgacaaaaattgattttgaga |
154 |
Q |
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| T |
646301 |
atgtttggttttgcggtgacaataattgattttgaga |
646265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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