View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18802_low_8 (Length: 325)
Name: NF18802_low_8
Description: NF18802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18802_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 2 - 306
Target Start/End: Complemental strand, 29936309 - 29936005
Alignment:
| Q |
2 |
tgcccacttttgggctcttgatttctaaaatgataagtattttctacaaaccagctgatgaacttcgtcatgattcaaaagtttgggcaatggtatttgt |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29936309 |
tgcccacttttgggctcttgatttctaaaatgataagtattttctacaaaccagctgatgaacttcgtcatgattcaaaagtttgggcaatggtgtttgt |
29936210 |
T |
|
| Q |
102 |
agcggttggtgtggcatcattactggttattccatgtagatactacttttttggcattgctggaggtaagttgatccaaagaatccgaaaaatgtgtttc |
201 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29936209 |
agcggttggtgtggcatcattactagttattccatgtagatactacttttttggcattgctggaggtaagttgatccaaagaatccgaaaaatgtgtttc |
29936110 |
T |
|
| Q |
202 |
gagaaagtagtttacatggaagtaaattggtttgatgaggttgagcattcaagcggagcacttggagcaaggctctccacagatgcagctttggttagag |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29936109 |
gagaaagtagtttacatggaagtaaattggtttgatgaggttgagcattcaagcggagcacttggagcaaggctctccacagatgcagctttggttagag |
29936010 |
T |
|
| Q |
302 |
ctctg |
306 |
Q |
| |
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||||| |
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| T |
29936009 |
ctctg |
29936005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 11 - 305
Target Start/End: Original strand, 51146731 - 51147025
Alignment:
| Q |
11 |
ttgggctcttgatttctaaaatgataagtattttctacaaaccagctgatgaacttcgtcatgattcaaaagtttgggcaatggtatttgtagcggttgg |
110 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
51146731 |
ttgggctcttagtttctaaaatgataagtactttctacaaaccagctgatgaacttcgtcatgattcaaaagtttgggcaatagtgtttgtagcggttgc |
51146830 |
T |
|
| Q |
111 |
tgtggcatcattactggttattccatgtagatactacttttttggcattgctggaggtaagttgatccaaagaatccgaaaaatgtgtttcgagaaagta |
210 |
Q |
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||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |
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| T |
51146831 |
tgtggcatcattactcattattccatgtagattctacttttttggcgttgctggaggtaagttgatccaaaggatccgaaaattgtgttttgagaaagta |
51146930 |
T |
|
| Q |
211 |
gtttacatggaagtaaattggtttgatgaggttgagcattcaagcggagcacttggagcaaggctctccacagatgcagctttggttagagctct |
305 |
Q |
| |
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||| |||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||| |
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| T |
51146931 |
gttcacatggaagtaagttggtttgacgatgttgagcattcaagcggagcacttggagcaaggctctccactgatgcagcatcagttagagctct |
51147025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 306
Target Start/End: Original strand, 51157861 - 51158165
Alignment:
| Q |
2 |
tgcccacttttgggctcttgatttctaaaatgataagtattttctacaaaccagctgatgaacttcgtcatgattcaaaagtttgggcaatggtatttgt |
101 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||| |
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| T |
51157861 |
tgcccatttttgggctattgatttctaaaatgataaatattttctacaaaccagctcatgaacttcgtcatgattcaaaagtttgggcaattgtgtttgt |
51157960 |
T |
|
| Q |
102 |
agcggttggtgtggcatcattactggttattccatgtagatactacttttttggcattgctggaggtaagttgatccaaagaatccgaaaaatgtgtttc |
201 |
Q |
| |
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|| |||| ||||||| ||||||| ||||||||||||||| |||||||||||| ||||||| ||||||||||| ||||| ||||| || |||||||| |
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| T |
51157961 |
ggccgttgctgtggcaacattactcattattccatgtagattctacttttttggtgttgctggtggtaagttgatacaaaggatccggaatatgtgtttt |
51158060 |
T |
|
| Q |
202 |
gagaaagtagtttacatggaagtaaattggtttgatgaggttgagcattcaagcggagcacttggagcaaggctctccacagatgcagctttggttagag |
301 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
51158061 |
gagaaagtagttcacatggaagtaagttggtttgatgaggctgagcattcaagcggagcacttggagcaaggctctccactgatgcagcttcagttagag |
51158160 |
T |
|
| Q |
302 |
ctctg |
306 |
Q |
| |
|
||||| |
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|
| T |
51158161 |
ctctg |
51158165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 9 - 292
Target Start/End: Original strand, 51200662 - 51200945
Alignment:
| Q |
9 |
ttttgggctcttgatttctaaaatgataagtattttctacaaaccagctgatgaacttcgtcatgattcaaaagtttgggcaatggtatttgtagcggtt |
108 |
Q |
| |
|
|||||| |||||| |||| |||||||| |||||||||||| | |||||||| ||||||||||| ||||||||||||||||| | |||||||| | | | |
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| T |
51200662 |
ttttggcctcttgctttcgaaaatgattagtattttctacgagccagctgacgaacttcgtcacgattcaaaagtttgggcgctagtatttgttgggctc |
51200761 |
T |
|
| Q |
109 |
ggtgtggcatcattactggttattccatgtagatactacttttttggcattgctggaggtaagttgatccaaagaatccgaaaaatgtgtttcgagaaag |
208 |
Q |
| |
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| ||||||||| ||| | || |||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||||| | |
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| T |
51200762 |
gctgtggcatcgttattcatttttccatgtagattctacttttttggcattgctggaggtaagttgatcaaaaggatccggaaaatgtgttttgagaagg |
51200861 |
T |
|
| Q |
209 |
tagtttacatggaagtaaattggtttgatgaggttgagcattcaagcggagcacttggagcaaggctctccacagatgcagctt |
292 |
Q |
| |
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||||| | |||||||| | ||||||||||| | |||||||||||| || ||| |||||||||||||||| ||||||||||||| |
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| T |
51200862 |
tagttcatatggaagtgagctggtttgatgaagctgagcattcaagtggcgcaattggagcaaggctctctacagatgcagctt |
51200945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 253
Target Start/End: Original strand, 34586206 - 34586306
Alignment:
| Q |
153 |
tggcattgctggaggtaagttgatccaaagaatccgaaaaatgtgtttcgagaaagtagtttacatggaagtaaattggtttgatgaggttgagcattca |
252 |
Q |
| |
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||||||||||||||||||||||||| ||| || || ||||||||||| ||||| ||||||||||||||||||| |||||||| ||| |||||||||| |
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| T |
34586206 |
tggcattgctggaggtaagttgatcagaaggattcggaaaatgtgttttgagaaggtagtttacatggaagtaagttggtttgttgaatctgagcattca |
34586305 |
T |
|
| Q |
253 |
a |
253 |
Q |
| |
|
| |
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|
| T |
34586306 |
a |
34586306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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