View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18802_low_9 (Length: 314)
Name: NF18802_low_9
Description: NF18802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18802_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 29936323 - 29936621
Alignment:
| Q |
1 |
cagcactgcagctatagtacccatcaataagactgaaatctcaggcttgttaaaatatgccaggcgataaagtggcatttctggtggttaagaaactgtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
29936323 |
cagcactgcagctatagtacccatcaataagactgaaatctcaggcttgttaaaatatgccaggcgataaagtggcacttctggtggtgaagaaactgtt |
29936422 |
T |
|
| Q |
101 |
gaaagagaagcttgaggtccaccatctgcagtctctaagaagccatctgttgtgggtgcaccacatgattctgaaaaagagtgacgaccactgtttccag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29936423 |
gaaagagaagcttgaggtccaccatctgcagtctctaagaagccatctgttgtgggtgcaccacatgatgctgaaaaagagtgacgaccactgtttccag |
29936522 |
T |
|
| Q |
201 |
atgacacttgccttatgaatcttgaggataaagatatttcacttgatcgtttttcagatagcattatactgtttgatttgtttgagtcattggcaacat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29936523 |
atgacacttgccttatgaatcttgaggataaagatatttcacttgatcgtttttcagatagcattatactgtttgatttatttgagtcattggcaacat |
29936621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 51157847 - 51157565
Alignment:
| Q |
1 |
cagcactgcagctatagtacccatcaataagactgaaatctcaggcttgttaaaatatgccaggcgataaagtggcatttctggtggttaagaaactgtt |
100 |
Q |
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||||||||||||||| || ||||| |||| ||| | | |||||||||||||| |||||||||||||||||||||||| ||| |||||| |||||||||| |
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| T |
51157847 |
cagcactgcagctattgtccccattaatatgaccgcagtctcaggcttgttataatatgccaggcgataaagtggcacttccggtggtgaagaaactgtc |
51157748 |
T |
|
| Q |
101 |
gaaagagaagcttgaggtccaccatctgcagtctctaagaagccatctgttgtgggtgcaccacatgattctgaaaaagagtgacgaccactgtttccag |
200 |
Q |
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||| ||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||| || ||||| |||| |||||||||||||| |||||||||| |
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| T |
51157747 |
gaaggagaagcttgaggtccaccgtctgcagtttctaagaagccatctgttgcgggtgcaacatatgatgctgagaaagagtgacgaccgctgtttccag |
51157648 |
T |
|
| Q |
201 |
atgacacttgccttatgaatcttgaggataaagatatttcacttgatcgtttttcagatagcattatactgtttgatttgttt |
283 |
Q |
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||||| |||| ||||| ||||| |||| |||||| | | ||| ||| || || |||| ||| |||||||||||| |||||| |
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| T |
51157647 |
atgacccttggcttatagatcttaaggaaaaagatctctgactcgattgtcttccagaatgcactatactgtttgacttgttt |
51157565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 51146708 - 51146434
Alignment:
| Q |
1 |
cagcactgcagctatagtacccatcaataagactgaaatctcaggcttgttaaaatatgccaggcgataaagtggcatttctggtggttaagaaactgtt |
100 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| | || |
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| T |
51146708 |
cagcactgcagttatagtccccatcaataagactggaatctcaggcttgttaaaatatgccaggcgataaagtggcacttctggtggtgaagaatttttt |
51146609 |
T |
|
| Q |
101 |
gaaagagaagcttgaggtccaccatctgcagtctctaagaagccatctgttgtgggtgcaccacatgattctgaaaaagagtgacgaccactgtttccag |
200 |
Q |
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||| |||| ||||||||||| |||||| |||| |||||||| |||||||||||||||||| || | ||| |||| |||||||||||||| |||||||||| |
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| T |
51146608 |
gaaggagacgcttgaggtcccccatcttcagtttctaagaatccatctgttgtgggtgcaacataagatgctgagaaagagtgacgaccgctgtttccag |
51146509 |
T |
|
| Q |
201 |
atgacacttgccttatgaatcttgaggataaagatatttcacttgatcgtttttcagatagcattatactgtttg |
275 |
Q |
| |
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|||| |||| ||||| ||||| |||| |||||| | | ||| ||| || || |||| ||| ||||||||||| |
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| T |
51146508 |
ctgacccttggcttattgatcttaaggaaaaagatctctgactcgattgtcttccagaatgcactatactgtttg |
51146434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 4 - 299
Target Start/End: Complemental strand, 51200638 - 51200334
Alignment:
| Q |
4 |
cactgcagctatagtacccatcaataagactgaaatctcaggcttgttaaaatatgccaggcgataaagtggcatttctggtggttaagaaactgttgaa |
103 |
Q |
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||||||||||||||| || || | |||||| | |||||| |||||||| ||||| ||||||||||||||||| | |||||||||| ||||||| |||||| |
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| T |
51200638 |
cactgcagctatagttcctataagtaagacaggaatctcgggcttgtttaaataggccaggcgataaagtggaacttctggtggtgaagaaaccgttgaa |
51200539 |
T |
|
| Q |
104 |
agagaagcttgaggtccaccatctgcagtctctaagaagccatctgtt---gtgggtgcaccacatgattctgaaaaagagtgacgaccactgtt----- |
195 |
Q |
| |
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||| | |||| ||||||||||||||| | ||| |||||||| ||| | || || || || |||| |||| || ||||||||||| ||||| |
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| T |
51200538 |
ggaggaacttgtggtccaccatctgcaatttctgagaagccaactggtacagttggcacaacatgtgatgctgagaatgagtgacgaccgctgttcccac |
51200439 |
T |
|
| Q |
196 |
-tccagatgacacttgccttatgaatcttgaggataaagatatttcacttgatcgtttttcagatagcattatactgtttgatttgtttgagtcattggc |
294 |
Q |
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||||||||||||||| |||| | |||||||| | |||| ||| ||| |||||| |||||||||||| |||||||||||| |||||| |||||||| |
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| T |
51200438 |
ctccagatgacacttggcttaaagaccttgaggagagagatctttgactcgatcgtctttcagatagcactatactgtttgacttgtttttgtcattggt |
51200339 |
T |
|
| Q |
295 |
aacat |
299 |
Q |
| |
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||||| |
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|
| T |
51200338 |
aacat |
51200334 |
T |
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