View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18803_high_6 (Length: 268)
Name: NF18803_high_6
Description: NF18803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18803_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 34817251 - 34817000
Alignment:
| Q |
1 |
acccattatctttcagatttatcatacgagtcttggttagctaacaaagaatgaccaataataatagaaccatttaggaaaaagattgatagtgtgacaa |
100 |
Q |
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| T |
34817251 |
acccattatctttcagatttatcatacgagtcttggttagctaacaaagaatgaccaataataatagaaccatctaggaaaaagattgatagtgcgacaa |
34817152 |
T |
|
| Q |
101 |
actacccacnnnnnnncaaggaatagataggcaccgttggatcttgcattagattgcagtgtattttgattttcatgtatttgaaaaaataataccactg |
200 |
Q |
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| T |
34817151 |
actacccacaaaaaa-caacgaatagataggcaccgttggatcttgcattagattgcagtgtattttgattttcatgtatttgaaaaaataataccactg |
34817053 |
T |
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| Q |
201 |
cccccatgatttgtgtgccagtcgcagtgttatttctcgcaccaagtagcaac |
253 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34817052 |
cccccatgattcgtgtgccagtcgcagtgttatttctcgcaccaagtagcaac |
34817000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 76 - 252
Target Start/End: Original strand, 23472184 - 23472359
Alignment:
| Q |
76 |
aggaaaaagattgatagtgtgacaaactacccacnnnnnnncaaggaatagataggcaccgttggatcttgcattagattgcagtgtattttgattttca |
175 |
Q |
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| T |
23472184 |
aggaaaaagcttgatagtgcgacaaactacccacgaaaaa-caacgaataaataggtaccgttggatatttcattagattgcagtttattttgactttta |
23472282 |
T |
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| Q |
176 |
tgtattt-gaaaaaataataccactgcccccatgatttgtgtgccagtcgcagtgttatttctcgcaccaagtagcaa |
252 |
Q |
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| T |
23472283 |
tgttttttgaaaaaataataccactgcccc-atgatttgtgtgccagtcgcactgttatttctcgcaccaagtagcaa |
23472359 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 121 - 252
Target Start/End: Original strand, 41552964 - 41553095
Alignment:
| Q |
121 |
gaatagataggcaccgttggatcttgcattagattgcagtgtattttgattttcatgtattt-gaaaaaataataccactgcccccatgatttgtgtgcc |
219 |
Q |
| |
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||||| ||||| ||| |||||| || |||||||||||||| |||||||| ||| |||||||| |||||||||||||||||||||| |||||| ||||||| |
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| T |
41552964 |
gaataaataggtaccattggatatttcattagattgcagtttattttgacttttatgtattttgaaaaaataataccactgcccc-atgattcgtgtgcc |
41553062 |
T |
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| Q |
220 |
agtcgcagtgttatttctcgcaccaagtagcaa |
252 |
Q |
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| T |
41553063 |
agtcgcagtgttatttctcgcaccaagtagcaa |
41553095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 5002283 - 5002177
Alignment:
| Q |
139 |
ggatcttgcattagattgcagtgtattttgattttcatgtatt-tgaaaaaataataccactgcccccatgatttgtgtgccagtcgcagtgttatttct |
237 |
Q |
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| T |
5002283 |
ggatctttcattagattgtaatttattttgactttcatgtattctgaaaatataatatcactaccagcatgattcgtgcgccagtcgtgctattatttct |
5002184 |
T |
|
| Q |
238 |
cgcacca |
244 |
Q |
| |
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||||||| |
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| T |
5002183 |
cgcacca |
5002177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 76 - 252
Target Start/End: Original strand, 45801991 - 45802167
Alignment:
| Q |
76 |
aggaaaaagattgatagtgtgacaaactacccacnnnnnnncaaggaatagataggcaccgttggatcttgcattagattgcagtgtattttgattttca |
175 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45801991 |
aggaaaaagattgatagtgcgacaaactacccacgaaaaa-caacgaatagataggcatcgttggatcttgcattagattgcagtgtattttgactttca |
45802089 |
T |
|
| Q |
176 |
tgtatttgaaaaaataataccactg-cccccatgatttgtgtgccagtcgcagtgttatttctcgcaccaagtagcaa |
252 |
Q |
| |
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|| |||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
45802090 |
tgcatttgaaaaaataataccactgccccccatgattcgtgtgccagtcgcactgttatttctcgcaccaagtagcaa |
45802167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 32518072 - 32518021
Alignment:
| Q |
202 |
ccccatgatttgtgtgccagtcgcagtgttatttctcgcaccaagtagcaac |
253 |
Q |
| |
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|||||||||| |||||||| ||||| |||||||||||||||||||||||||| |
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| T |
32518072 |
ccccatgattcgtgtgccaatcgcactgttatttctcgcaccaagtagcaac |
32518021 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 121 - 253
Target Start/End: Original strand, 14477699 - 14477831
Alignment:
| Q |
121 |
gaatagataggcaccgttggatcttgcattagattgcagtgtattttgattttcatgtatttgaaaaaataataccactgcccccatgatttgtgtgcca |
220 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| || |
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| T |
14477699 |
gaatagataggcaccgttggatcttgcattagattgcagtgtattttgactttcatgtatttgagaaaataataccactgcccccatgattcgtgtgtca |
14477798 |
T |
|
| Q |
221 |
gtcgcagtgttatttctcgcaccaagtagcaac |
253 |
Q |
| |
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|| ||| |||||||||||||||||||||||||| |
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| T |
14477799 |
gttgcactgttatttctcgcaccaagtagcaac |
14477831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 74 - 254
Target Start/End: Original strand, 32953389 - 32953567
Alignment:
| Q |
74 |
ttaggaaaaagattgatagtgtgacaaactacccacnnnnnnncaaggaatagataggcaccgttggatcttgcattagattgcagtgtattttgatttt |
173 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||| ||| |||||||||| |||||||||||||||||||||||| |||||| ||||||||| |
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| T |
32953389 |
ttaggaaaaagattgatagtgcgacaaattacccacaaaaaaacaacgaatagatagtgaccgttggatcttgcattagattg-agtgtactttgatttt |
32953487 |
T |
|
| Q |
174 |
catgtatttgaaaaaataataccactgcccccatgatttgtgtgccagtcgcagtgttatttctcgcaccaagtagcaact |
254 |
Q |
| |
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||| ||||||||||||||||||||||||| | |||||| |||||||||||||| |||||||||||||| |||||||||||| |
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| T |
32953488 |
catatatttgaaaaaataataccactgccac-atgattcgtgtgccagtcgcactgttatttctcgcatcaagtagcaact |
32953567 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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