View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18803_low_2 (Length: 646)
Name: NF18803_low_2
Description: NF18803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18803_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 540; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 15 - 627
Target Start/End: Complemental strand, 29113161 - 29112548
Alignment:
| Q |
15 |
aatatgactaaatttgaaatgccaaatcattagttttagcattgccacattgaactggttatgcatggaataccaggaaaagaatctgtatcagcagaga |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29113161 |
aatatgactaaatttgaaatgccaaatcattagttttagcattgccacattgaactggttatgcatggaataccaggaaaagaatctgtatcagcggaga |
29113062 |
T |
|
| Q |
115 |
agtttgacaatggtatgacaaatgatttgattcttgaagtgcagtattttgtccttgatgcaatccttgagttattctgccaacgagaggaattcattgt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29113061 |
agtttgacaatggtatgacaaatgatttgattcttgaagtgcaatattttgtccttgatgcaatccttgagttattctgccaatgagaggaattcattga |
29112962 |
T |
|
| Q |
215 |
tgaaatataagttaggtacaaacacagcttagcaggagaagtttagcaaacatgtaaaaaattaggaaaataaataaatatgcaactcctatgtataaat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29112961 |
tgaaatataagttaggtacaaacacagcttagcaggagaagtttagcaaacatgtcaaaaattaggaaaataaataaatatgcaactcctatgtataaat |
29112862 |
T |
|
| Q |
315 |
ataatccacaacagaaagacatttacatattattgttgttcttatttgttatactaataaatgatctgatttcaatttttcctatcgtttacaacaatgt |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29112861 |
ataatccacaacagaaagacatttacatattat---tgttcttatttgttatactaataaatgatctgatttcaatttttcctattgtttacaacaatgt |
29112765 |
T |
|
| Q |
415 |
tataggtacgcatatctaccaccatttagcagtgatagatctttgtcggagaatttattggccacgtaatgtagcttctcctctccaaaccaaattttct |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29112764 |
tataggtacgcatatctaccaccatttagcagtgatagatctttgtcggagaatttattggccacgtaatgtagattctcctctccaaaccaaattttct |
29112665 |
T |
|
| Q |
515 |
catagccaagatt-----cctaaccacttatggtggccaagtgcctcaccactccgaggaaccagatttctcccatctttgatcacaaataactttgcta |
609 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29112664 |
catagccaagattcgaaccctaaccacttatggtggccaagtgccttaccactccgaggaaccagatttctcccatctttgattacaaataactttgcta |
29112565 |
T |
|
| Q |
610 |
ataaaggaagctactgta |
627 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
29112564 |
at-aaggaagctactgta |
29112548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 33312734 - 33313046
Alignment:
| Q |
18 |
atgactaaatttgaaatgccaaatcattagttttagcattgccacattgaactggttatgcatggaataccaggaaaagaatctgtatcagcagagaagt |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33312734 |
atgactaaatttgaaatggcaaatcattagttttagctttgccacattgaactgattatgcatggaataccaggaaaagaatctgtatcagcagagaagt |
33312833 |
T |
|
| Q |
118 |
ttgacaatggtatgacaaatgatttgattcttgaagtgcagtattttgtccttgatgcaatccttgagttattctgccaacgagaggaattcattgttga |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| |
|
|
| T |
33312834 |
ttgacaatggtatgaaaaatgatttgattcttgaagtgcaatattttgtccttgatgcaatccttgagttattctgcgaatgagaggaattcattgatga |
33312933 |
T |
|
| Q |
218 |
aatataagttaggtacaaacacagcttagcaggagaagtttagcaaacatgtaaaaaattaggaaaataaataaatatgcaactcctatgtataaatata |
317 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| || |
|
|
| T |
33312934 |
attataagttaggtacaaacacaggttagcaggaaaagtttagcaagcatgtaaaaaattaggaaaaaaaataaatatgtaactcctatgtataaatgta |
33313033 |
T |
|
| Q |
318 |
atccacaacagaa |
330 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
33313034 |
atccccaacagaa |
33313046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 415 - 515
Target Start/End: Original strand, 33313052 - 33313152
Alignment:
| Q |
415 |
tataggtacgcatatctaccaccatttagcagtgatagatctttgtcggagaatttattggccacgtaatgtagcttctcctctccaaaccaaattttct |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
33313052 |
tataggtacgcatatctaccaccatttagcagtgatagatctttgtcgtggaatttattaaccacataatgtagattctcctctccaaaccaaattttct |
33313151 |
T |
|
| Q |
515 |
c |
515 |
Q |
| |
|
| |
|
|
| T |
33313152 |
c |
33313152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University