View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18803_low_3 (Length: 623)

Name: NF18803_low_3
Description: NF18803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18803_low_3
NF18803_low_3
[»] chr7 (9 HSPs)
chr7 (241-515)||(42513062-42513346)
chr7 (336-515)||(41712265-41712442)
chr7 (248-439)||(38572287-38572488)
chr7 (340-515)||(49017102-49017277)
chr7 (365-517)||(30456307-30456458)
chr7 (391-515)||(6102928-6103053)
chr7 (365-515)||(30452702-30452847)
chr7 (393-505)||(11206499-11206611)
chr7 (464-520)||(4257360-4257416)
[»] chr5 (6 HSPs)
chr5 (241-515)||(8123394-8123678)
chr5 (241-506)||(671328-671603)
chr5 (365-515)||(24108697-24108848)
chr5 (388-515)||(41709523-41709650)
chr5 (420-515)||(10321869-10321963)
chr5 (241-322)||(41709389-41709470)
[»] chr3 (15 HSPs)
chr3 (248-515)||(36326375-36326640)
chr3 (241-452)||(30911921-30912142)
chr3 (241-467)||(55211736-55211968)
chr3 (419-517)||(14029381-14029479)
chr3 (315-441)||(32414686-32414816)
chr3 (241-324)||(14029173-14029256)
chr3 (381-455)||(33328220-33328294)
chr3 (474-515)||(19798051-19798092)
chr3 (474-515)||(19798296-19798337)
chr3 (478-515)||(1830902-1830939)
chr3 (474-515)||(18319509-18319550)
chr3 (484-516)||(30911612-30911644)
chr3 (478-517)||(30912148-30912187)
chr3 (239-298)||(32414500-32414559)
chr3 (478-519)||(32414918-32414959)
[»] chr1 (10 HSPs)
chr1 (241-515)||(18583886-18584170)
chr1 (365-515)||(23405475-23405625)
chr1 (241-359)||(13087573-13087700)
chr1 (421-515)||(21075941-21076035)
chr1 (388-513)||(13087701-13087825)
chr1 (252-316)||(21076184-21076248)
chr1 (421-515)||(16544437-16544529)
chr1 (389-466)||(9893767-9893844)
chr1 (441-515)||(25541115-25541184)
chr1 (366-411)||(24618436-24618481)
[»] chr6 (10 HSPs)
chr6 (252-515)||(33242726-33242998)
chr6 (247-515)||(4834589-4834869)
chr6 (252-515)||(7415516-7415789)
chr6 (16-213)||(30513158-30513355)
chr6 (252-515)||(7422524-7422797)
chr6 (252-518)||(7426463-7426739)
chr6 (540-606)||(30513687-30513753)
chr6 (407-515)||(13886583-13886691)
chr6 (241-322)||(13886454-13886535)
chr6 (482-515)||(16389217-16389250)
[»] chr4 (11 HSPs)
chr4 (381-515)||(36050680-36050813)
chr4 (381-515)||(36053939-36054072)
chr4 (365-516)||(27387620-27387771)
chr4 (383-515)||(55322334-55322467)
chr4 (365-513)||(12638012-12638158)
chr4 (375-515)||(24733626-24733766)
chr4 (275-405)||(20441029-20441168)
chr4 (241-322)||(36050519-36050600)
chr4 (241-322)||(36053778-36053859)
chr4 (482-516)||(10129631-10129665)
chr4 (365-432)||(45736016-45736084)
[»] chr2 (8 HSPs)
chr2 (365-499)||(45327420-45327554)
chr2 (410-515)||(31211858-31211963)
chr2 (434-506)||(31193246-31193318)
chr2 (284-407)||(31211598-31211731)
chr2 (466-515)||(40400909-40400958)
chr2 (241-324)||(4472702-4472785)
chr2 (366-487)||(28860754-28860873)
chr2 (365-416)||(40400997-40401048)
[»] chr8 (10 HSPs)
chr8 (381-515)||(44761983-44762117)
chr8 (381-516)||(44765290-44765425)
chr8 (419-513)||(11825056-11825148)
chr8 (435-513)||(23090074-23090152)
chr8 (452-513)||(1495750-1495811)
chr8 (241-322)||(44765129-44765210)
chr8 (241-296)||(24249050-24249105)
chr8 (482-516)||(32519622-32519656)
chr8 (240-322)||(44761822-44761904)
chr8 (392-456)||(14276620-14276685)


Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 241 - 515
Target Start/End: Complemental strand, 42513346 - 42513062
Alignment:
Q  241 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaagg----------tctatt 330  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||          ||||||    
T  42513346 tgataggatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgactcaccttaatctagaaggatctagaaggtctatt 42513247  T
Q  331 gttaggggatgatattgagtatgttagggtacacttatcttattatgagcatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaa 430  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42513246 gttaggggataatattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaa 42513147  T
Q  431 aagtataatgaatttcctttcttttatctctagttt-tctctcttaatttctggagtgtgatccctactcgaattgggtcgtatca 515  Q
    || |||||||||||| |||||| || |||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||    
T  42513146 aaatataatgaattttctttctcttttctctagtttctccctc-taatttctggagtgtgatccctactcgaattgggtcgtatca 42513062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 336 - 515
Target Start/End: Original strand, 41712265 - 41712442
Alignment:
Q  336 gggatgatattgagtatgttagggtacacttatcttattatgagcatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaagta 435  Q
    ||||| ||||| ||||||||||||| ||||||| |||||||||| | ||||||||||||||||| |||||||| |||||||||||||| ||||||||  |    
T  41712265 gggataatattaagtatgttagggtgcacttattttattatgagtaggcacaagtctatataagtattgtatgtcttattatgagaatgaatgaaaa--a 41712362  T
Q  436 taatgaatttcctttcttttatctctagttttctctcttaatttctggagtgtgatccctactcgaattgggtcgtatca 515  Q
    |||  ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  41712363 taacaaatttcctttcttttgtctctagttttctctcttaatttttggagtgtgatccttactcgaattgggtcgtatca 41712442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 248 - 439
Target Start/End: Complemental strand, 38572488 - 38572287
Alignment:
Q  248 atatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatcta----------gaaggtctattgttaggg 337  Q
    ||||||||||||| ||| ||||||||| ||||||| |||||||||||||||||||||| |||||||||||||          |||||| | |||||||||    
T  38572488 atatttagaataatgagtactaatgtgctgactcagctagttctagaagttattatgactcaccttaatctaaaaggatctagaaggtatcttgttaggg 38572389  T
Q  338 gatgatattgagtatgttagggtacacttatcttattatgagcatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaagtata 437  Q
    ||| |||||||||| ||||||||||||||||||||||||||  |||| ||||||||||||| |||||||||||||||||||||||| ||| |||| ||||    
T  38572388 gataatattgagtaagttagggtacacttatcttattatgaatatgcccaagtctatataaacattgtatgccttattatgagaattaataaaaaatata 38572289  T
Q  438 at 439  Q
    ||    
T  38572288 at 38572287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 340 - 515
Target Start/End: Original strand, 49017102 - 49017277
Alignment:
Q  340 tgatattgagtatgttagggtacacttatcttattatgagcatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaagtataat 439  Q
    ||||||||||||||||| | | |||||||||||||||||  || ||||||| | |||||||||||||||||||||||||||| | |||||||| ||||||    
T  49017102 tgatattgagtatgttatgatgcacttatcttattatgactatccacaagtttgtataagcattgtatgccttattatgagacttaatgaaaaatataat 49017201  T
Q  440 gaatttcctttcttttatctctagttt-tctctcttaatttctggagtgtgatccctactcgaattgggtcgtatca 515  Q
      |||| |||||||||||||||||||| |||||| |||||| |||||||||||||||| ||||||| ||||||||||    
T  49017202 atattttctttcttttatctctagtttctctctc-taatttatggagtgtgatccctattcgaattaggtcgtatca 49017277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 365 - 517
Target Start/End: Original strand, 30456307 - 30456458
Alignment:
Q  365 ttatcttattatgagcatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaagtataatgaatttcctttcttttatctctagt 464  Q
    ||||||||||||||| ||||| ||||||||||||||||| |||||||||| || ||||  |||||||| |||||||||||| |||||| || ||||||||    
T  30456307 ttatcttattatgagtatgca-aagtctatataagcattatatgccttatgattagaacgaatgaaaaatataatgaattttctttctcttttctctagt 30456405  T
Q  465 tt-tctctcttaatttctggagtgtgatccctactcgaattgggtcgtatcaga 517  Q
    || || ||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  30456406 ttctccctc-taaattctggagtgtgatccctactcgaattgggtcgtatcaga 30456458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 391 - 515
Target Start/End: Original strand, 6102928 - 6103053
Alignment:
Q  391 ctatataagcattgtatgccttattatgagaatcaatgaaaagtataatgaatttccttt-cttttatctctagttttctctcttaatttctggagtgtg 489  Q
    |||||||||||||||||   | || || |||||||||||||| ||||||||||||  ||| ||||||||||||||||||||||||||||| |||||||||    
T  6102928 ctatataagcattgtatctttcatgattagaatcaatgaaaaatataatgaattttttttgcttttatctctagttttctctcttaatttatggagtgtg 6103027  T
Q  490 atccctactcgaattgggtcgtatca 515  Q
    || |||||||||||||||| ||||||    
T  6103028 attcctactcgaattgggttgtatca 6103053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 365 - 515
Target Start/End: Original strand, 30452702 - 30452847
Alignment:
Q  365 ttatcttattatgagcatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaagtataatgaatttcctttcttttatctctagt 464  Q
    ||||||||||||||| ||||| |||||||||||    ||||||||||||| || ||||  |||||||| |||||||||||| |||||| || ||||||||    
T  30452702 ttatcttattatgagtatgca-aagtctatata----ttgtatgccttatgattagaacgaatgaaaaatataatgaattttctttctcttttctctagt 30452796  T
Q  465 tttctctct-taatttctggagtgtgatccctactcgaattgggtcgtatca 515  Q
    || ||| || ||| ||||||||||||||||||||||||||||||||||||||    
T  30452797 tt-ctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 30452847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 393 - 505
Target Start/End: Original strand, 11206499 - 11206611
Alignment:
Q  393 atataagcattgtatgccttattatgagaatcaatgaaaagtataatgaatttcctttcttttatctctagttt-tctctcttaatttctggagtgtgat 491  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||| || |||||||||| || ||| ||| ||||||||||||||    
T  11206499 atataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttctccctc-taaattctggagtgtgat 11206597  T
Q  492 ccctactcgaattg 505  Q
    | ||||||||||||    
T  11206598 ctctactcgaattg 11206611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 464 - 520
Target Start/End: Complemental strand, 4257416 - 4257360
Alignment:
Q  464 ttttctctcttaatttctggagtgtgatccctactcgaattgggtcgtatcagagtg 520  Q
    |||| |||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  4257416 ttttatctcttaatttctggagtgtgatccctactcatattgggtcgtatcagagtg 4257360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 171; Significance: 2e-91; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 241 - 515
Target Start/End: Original strand, 8123394 - 8123678
Alignment:
Q  241 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaagg----------tctatt 330  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||          ||||||    
T  8123394 tgataggatatttagaataaggagcactaatctggtgactcatctagttctagaagttattatgactgaccttaatctagaaggatctagaagatctatt 8123493  T
Q  331 gttaggggatgatattgagtatgttagggtacacttatcttattatgagcatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaa 430  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8123494 gttaggggataatattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaa 8123593  T
Q  431 aagtataatgaatttcctttcttttatctctagttt-tctctcttaatttctggagtgtgatccctactcgaattgggtcgtatca 515  Q
    || |||||||||||| |||||| || ||| || ||| || ||| ||||||||| |||||||||| |||||||||||||||||||||    
T  8123594 aaatataatgaattttctttctcttttctttaatttctccctc-taatttctgaagtgtgatccatactcgaattgggtcgtatca 8123678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 241 - 506
Target Start/End: Original strand, 671328 - 671603
Alignment:
Q  241 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaagg----------tctatt 330  Q
    ||||| |||||||||||||||||||| |||| | |||||||  ||| ||||||| |||||||||| ||||||||||||||||||          | ||||    
T  671328 tgataggatatttagaataaggagcattaatatagtgactcggctaattctagatgttattatgactcaccttaatctagaaggatccataagatatatt 671427  T
Q  331 gttaggggatgatattgagtatgttagggtacacttatcttattatgagcatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaa 430  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||| ||||||    
T  671428 gttaggggataatattgagtaggttagggtacacttatcttattatgagtatgcacaagtttatataatcattgtatgccttattatgagaattaatgaa 671527  T
Q  431 aagtataatgaatttcctttcttttatctctagttttctctcttaatttctggagtgtgatccctactcgaattgg 506  Q
    || |||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||    
T  671528 aaatataatgaattttctttcttttatctctagctttctctcttaatttctgaagtgtgatcccaactcgaattgg 671603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 365 - 515
Target Start/End: Original strand, 24108697 - 24108848
Alignment:
Q  365 ttatcttattatgagcatgca-caagtctatataagcattgtatgccttattatgagaatcaatgaaaagtataatgaatttcctttcttttatctctag 463  Q
    |||| |||||||||| ||||| ||||||||||||||||||||||| ||||| || |||| ||||||||| |||||||||||||||||  ||| |||||||    
T  24108697 ttattttattatgagtatgcaacaagtctatataagcattgtatgtcttatgattagaaccaatgaaaaatataatgaatttccttttgtttgtctctag 24108796  T
Q  464 ttttctctcttaatttctggagtgtgatccctactcgaattgggtcgtatca 515  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  24108797 ttttcttccttaatttctggagtgtgatccctactcgaattgggtcgtatca 24108848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 388 - 515
Target Start/End: Original strand, 41709523 - 41709650
Alignment:
Q  388 agtctatataagcattgtatgccttattatgagaatcaatgaaaagtataatgaatttcctttcttttatctctagttt-tctctcttaatttctggagt 486  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||| || ||| |||||| || ||| ||| |||||||||    
T  41709523 agtctatataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctatagtttctccctc-taaattctggagt 41709621  T
Q  487 gtgatccctactcgaattgggtcgtatca 515  Q
    |||||| ||||||||||||||||||||||    
T  41709622 gtgatctctactcgaattgggtcgtatca 41709650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 420 - 515
Target Start/End: Complemental strand, 10321963 - 10321869
Alignment:
Q  420 gaatcaatgaaaagtataatgaatttcctttcttttatctctagttt-tctctcttaatttctggagtgtgatccctactcgaattgggtcgtatca 515  Q
    |||||||||||||  |||||||||||||||||| |||||||||| || ||||||| ||||  ||||||||||||||||||| |||||||||||||||    
T  10321963 gaatcaatgaaaaa-ataatgaatttcctttctcttatctctagcttatctctctaaatta-tggagtgtgatccctactcaaattgggtcgtatca 10321869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 241 - 322
Target Start/End: Original strand, 41709389 - 41709470
Alignment:
Q  241 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaa 322  Q
    ||||| ||||| |||||||||||  |  ||||||||||||| |||||||||||||| || ||||| ||| ||||||||||||    
T  41709389 tgataggatatctagaataaggaatataaatgtggtgactcctctagttctagaaggtagtatgactcatcttaatctagaa 41709470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 170; Significance: 6e-91; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 248 - 515
Target Start/End: Original strand, 36326375 - 36326640
Alignment:
Q  248 atatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaaggtctattgttaggggatgatattg 347  Q
    ||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | |||||||||||||||||||    
T  36326375 atatttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatctagaaggtatcttgttaggggatgatattg 36326474  T
Q  348 agtatgttagggtacacttatcttattatgagcatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaagtataatgaatttcc 447  Q
    ||||||||||||| ||||||  |||||||||| |||  |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |    
T  36326475 agtatgttagggtgcacttaggttattatgagtatg--caagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttc 36326572  T
Q  448 tttcttttatctctagttt-tctctcttaatttctggagtgtgatccctactcgaattgggtcgtatca 515  Q
    ||||| || |||||||||| || ||| ||| ||||||||||||||||||||||||||||||||||||||    
T  36326573 tttctcttttctctagtttctccctc-taaattctggagtgtgatccctactcgaattgggtcgtatca 36326640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 241 - 452
Target Start/End: Original strand, 30911921 - 30912142
Alignment:
Q  241 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaagg-tcta---------tt 330  Q
    ||||| |||| ||||||||| ||| ||||||||| ||||||   ||||||||||||||||||||| |||||||||||||||||| ||||         ||    
T  30911921 tgataggatacttagaataatgagtactaatgtgatgactcggttagttctagaagttattatgactcaccttaatctagaaggatctaaaatatatctt 30912020  T
Q  331 gttaggggatgatattgagtatgttagggtacacttatcttattatgagcatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaa 430  Q
    |||||||||| ||||||||||||||||||| ||||||| ||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30912021 gttaggggataatattgagtatgttagggtgcacttattttattgtgagtatgcacaagtctatataagtattgtatgccttattatgagaatcaatgaa 30912120  T
Q  431 aagtataatgaatttcctttct 452  Q
    || |||||||||||| ||||||    
T  30912121 aaatataatgaattttctttct 30912142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 241 - 467
Target Start/End: Complemental strand, 55211968 - 55211736
Alignment:
Q  241 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaagg----------tctatt 330  Q
    ||||| ||||||||||||||||||||||||||||| |||||  ||||||||| ||||||| | || ||| ||||||||| ||||          | ||||    
T  55211968 tgataggatatttagaataaggagcactaatgtggcgactcggctagttctaaaagttatcacgactcatcttaatctaaaaggatccataaggtatatt 55211869  T
Q  331 gttaggggatgatattgagtatgttagggtacacttatcttattatgagcatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaa 430  Q
    | |||||||| ||||||||||||||||||| |||||||||||||||||  ||||||||||||||||     |||||||||||||||||||||||||||||    
T  55211868 ggtaggggataatattgagtatgttagggtgcacttatcttattatgaatatgcacaagtctatat-----ttgtatgccttattatgagaatcaatgaa 55211774  T
Q  431 aagtataatgaatttcctt-tcttttatctctagtttt 467  Q
    || ||||||||||||  || ||| ||||||||||||||    
T  55211773 aaatataatgaatttatttctctcttatctctagtttt 55211736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 419 - 517
Target Start/End: Original strand, 14029381 - 14029479
Alignment:
Q  419 agaatcaatgaaaagtataatgaatttcctttcttttatctctagttt-tctctcttaatttctggagtgtgatccctactcgaattgggtcgtatcaga 517  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| || ||| ||| |||||||||||||||||||||||||||||| |||||||||    
T  14029381 agaatcaatgaaaaatataatgaatttcctttcttttatctctagtttctcactc-taaattctggagtgtgatccctactcgaattgggccgtatcaga 14029479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 315 - 441
Target Start/End: Original strand, 32414686 - 32414816
Alignment:
Q  315 atctagaaggtctattgttaggggatgatattgagtatgttagggtacacttatcttattatgagcatgc----acaagtctatataagcattgtatgcc 410  Q
    ||||||||||| ||||||  |||||| ||||| ||||||||| ||| ||||||||||||| ||||  |||    |||||||||||||| |||||||||||    
T  32414686 atctagaaggtatattgtctggggataatattaagtatgttatggtgcacttatcttattttgagtttgcacaaacaagtctatataaacattgtatgcc 32414785  T
Q  411 ttattatgagaatcaatgaaaagtataatga 441  Q
    |||||| |||||||||| |||| ||||||||    
T  32414786 ttattacgagaatcaataaaaaatataatga 32414816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 324
Target Start/End: Original strand, 14029173 - 14029256
Alignment:
Q  241 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaagg 324  Q
    ||||| ||||||||||||||| ||||| |||| ||||||||  ||||||||||||| ||  |||| ||| ||||||||||||||    
T  14029173 tgataagatatttagaataagaagcacaaatgcggtgactcggctagttctagaaggtagaatgaatcatcttaatctagaagg 14029256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 381 - 455
Target Start/End: Original strand, 33328220 - 33328294
Alignment:
Q  381 atgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaagtataatgaatttcctttctttt 455  Q
    ||||| |||||| |||||||||||||||| |||| || |||| ||||||||  |||||| |||||||||||||||    
T  33328220 atgcataagtctgtataagcattgtatgctttataattagaaccaatgaaagatataatcaatttcctttctttt 33328294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 474 - 515
Target Start/End: Complemental strand, 19798092 - 19798051
Alignment:
Q  474 taatttctggagtgtgatccctactcgaattgggtcgtatca 515  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  19798092 taatttctggagtgtgatccctactcgaatcgggtcgtatca 19798051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 474 - 515
Target Start/End: Complemental strand, 19798337 - 19798296
Alignment:
Q  474 taatttctggagtgtgatccctactcgaattgggtcgtatca 515  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  19798337 taatttctggagtctgatccctactcgaattgggtcgtatca 19798296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 478 - 515
Target Start/End: Original strand, 1830902 - 1830939
Alignment:
Q  478 ttctggagtgtgatccctactcgaattgggtcgtatca 515  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  1830902 ttctggagtgtgatccctacttgaattgggtcgtatca 1830939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 474 - 515
Target Start/End: Original strand, 18319509 - 18319550
Alignment:
Q  474 taatttctggagtgtgatccctactcgaattgggtcgtatca 515  Q
    |||||||| ||||||||||||||||||||| |||||||||||    
T  18319509 taatttctagagtgtgatccctactcgaatcgggtcgtatca 18319550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 484 - 516
Target Start/End: Complemental strand, 30911644 - 30911612
Alignment:
Q  484 agtgtgatccctactcgaattgggtcgtatcag 516  Q
    |||||||||||||||||||||||||||||||||    
T  30911644 agtgtgatccctactcgaattgggtcgtatcag 30911612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 517
Target Start/End: Original strand, 30912148 - 30912187
Alignment:
Q  478 ttctggagtgtgatccctactcgaattgggtcgtatcaga 517  Q
    |||||||||||||||| ||||||||||| |||||||||||    
T  30912148 ttctggagtgtgatccgtactcgaattgagtcgtatcaga 30912187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 298
Target Start/End: Original strand, 32414500 - 32414559
Alignment:
Q  239 tgtgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagtt 298  Q
    ||||||| |||| |||||||||||| || ||||||||||||||| |||| | ||||||||    
T  32414500 tgtgataggatagttagaataaggaacattaatgtggtgactcagctagatttagaagtt 32414559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 519
Target Start/End: Original strand, 32414918 - 32414959
Alignment:
Q  478 ttctggagtgtgatccctactcgaattgggtcgtatcagagt 519  Q
    ||||||||||||||||||| |  |||||||||||||||||||    
T  32414918 ttctggagtgtgatccctatttaaattgggtcgtatcagagt 32414959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 166; Significance: 2e-88; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 241 - 515
Target Start/End: Complemental strand, 18584170 - 18583886
Alignment:
Q  241 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaagg----------tctatt 330  Q
    ||||| |||||||||||||||||||| |||||||||| || | |||||| || |||||||||||| ||||||||||||||||||          | ||||    
T  18584170 tgataggatatttagaataaggagcattaatgtggtggcttagctagttataaaagttattatgactcaccttaatctagaaggatctaaaaggtatatt 18584071  T
Q  331 gttaggggatgatattgagtatgttagggtacacttatcttattatgagcatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaa 430  Q
     ||||||||| ||||||||||||||||||| || ||||| |||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18584070 attaggggataatattgagtatgttagggtgcagttatcgtattataagtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaa 18583971  T
Q  431 aagtataatgaatttcctttcttttatctctagttttctctcttaatttctggagtgtgatccctactcgaattgggtcgtatca 515  Q
    || |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  18583970 aaatatactgaatttcctttcttttatctctagttttctctcttaatttctggagtgtaatctctactcgaattgggtcgtatca 18583886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 365 - 515
Target Start/End: Complemental strand, 23405625 - 23405475
Alignment:
Q  365 ttatcttattatgagcatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaagtataatgaatttcctttcttttatctctagt 464  Q
    |||||||| |||| | |||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||| || ||||||||    
T  23405625 ttatcttactatgtgtatgcacaagtctatctaaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagt 23405526  T
Q  465 tt-tctctcttaatttctggagtgtgatccctactcgaattgggtcgtatca 515  Q
    || || ||| ||| ||||||||||||||||||||| ||||||||||||||||    
T  23405525 ttctccctc-taaattctggagtgtgatccctacttgaattgggtcgtatca 23405475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 241 - 359
Target Start/End: Original strand, 13087573 - 13087700
Alignment:
Q  241 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcacctta---------atctagaaggtctattg 331  Q
    ||||| |||||| ||||||||||||| ||||||||||||||  |||||||||||||||||||||| ||||||||         ||||||||||| |||||    
T  13087573 tgataggatattcagaataaggagcattaatgtggtgactcggctagttctagaagttattatgactcaccttaatctagacgatctagaaggtatattg 13087672  T
Q  332 ttaggggatgatattgagtatgttaggg 359  Q
    ||||||||| |||| |||||||||||||    
T  13087673 ttaggggataatatcgagtatgttaggg 13087700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 421 - 515
Target Start/End: Complemental strand, 21076035 - 21075941
Alignment:
Q  421 aatcaatgaaaagtataatgaatttcctttcttttatctctagttttctctc-ttaatttctggagtgtgatccctactcgaattgggtcgtatca 515  Q
    |||||||||||| |||| ||||||||||||||||||||| ||| ||||||||  ||| ||||||||||| ||||||||||||||| | ||||||||    
T  21076035 aatcaatgaaaaatatagtgaatttcctttcttttatctgtag-tttctctcgctaaattctggagtgtcatccctactcgaatttgatcgtatca 21075941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 388 - 513
Target Start/End: Original strand, 13087701 - 13087825
Alignment:
Q  388 agtctatataagcattgtatgccttattatgagaatcaatg-aaaagtataatgaatttcctttcttttatctctagttttctctcttaatttctggagt 486  Q
    |||||||||||| ||||||||||||||||||||||| |||| |||| || |||||||||  |||||||||||| ||    ||||||  || |||||||||    
T  13087701 agtctatataagtattgtatgccttattatgagaatgaatgaaaaaatacaatgaatttattttcttttatcttta-acctctctc-gaaattctggagt 13087798  T
Q  487 gtgatccctactcgaattgggtcgtat 513  Q
    ||||| |||| ||||||||||||||||    
T  13087799 gtgatacctattcgaattgggtcgtat 13087825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 21076248 - 21076184
Alignment:
Q  252 ttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaat 316  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||  | ||||| ||||||||||    
T  21076248 ttagaataaggagtactaatgtggtgactcacctagttctagaagcaaatatgattcaccttaat 21076184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 515
Target Start/End: Original strand, 16544437 - 16544529
Alignment:
Q  421 aatcaatgaaaagtataatgaatttcctttcttttatctctagttttctctcttaatttctggagtgtgatccctactcgaattgggtcgtatca 515  Q
    ||||||||||||  |||| |||||||||||||||||||| |||||||||   |||||||||| ||||||||| ||| || |||| || |||||||    
T  16544437 aatcaatgaaaa--ataacgaatttcctttcttttatctttagttttcttctttaatttctgaagtgtgatcgctattcaaattaggccgtatca 16544529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 466
Target Start/End: Original strand, 9893767 - 9893844
Alignment:
Q  389 gtctatataagcattgtatg-ccttattatgagaatcaatgaaaagtataatgaatttcctttcttttatctctagttt 466  Q
    ||||||||||||||| |||| ||| || ||| || |||||||||| |||||||||||| |||||||| |||||||||||    
T  9893767 gtctatataagcattttatgacctcataatggga-tcaatgaaaaatataatgaattttctttctttcatctctagttt 9893844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 515
Target Start/End: Complemental strand, 25541184 - 25541115
Alignment:
Q  441 aatttcctttcttttatctctagttttctctcttaatttctggagtgtgatccctactcgaattgggtcgtatca 515  Q
    ||||| |||| |||||||||||||||||||||||     || ||||||||||||||||  ||||| |||||||||    
T  25541184 aattttcttttttttatctctagttttctctctt-----ctagagtgtgatccctacttaaattgtgtcgtatca 25541115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 411
Target Start/End: Complemental strand, 24618481 - 24618436
Alignment:
Q  366 tatcttattatgagcatgcacaagtctatataagcattgtatgcct 411  Q
    |||||||||||||| ||| | ||||||||||||| |||||||||||    
T  24618481 tatcttattatgagtatgtataagtctatataagaattgtatgcct 24618436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 1e-82; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 252 - 515
Target Start/End: Original strand, 33242726 - 33242998
Alignment:
Q  252 ttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaaggtct----------attgttaggggatg 341  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||| |||| |||| ||||  |          |||||||||||||     
T  33242726 ttagaataaggagcactaatatggtgactcagctagttctagaagttgttatgagtcatcttagtctataaggatttagaagacatattgttaggggata 33242825  T
Q  342 atattgagtatgttagggtacacttatcttattatgagcatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaagtataatga 441  Q
    ||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33242826 atattgagtatgttagg-tgcacttatcttattatgagtatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaaatataatga 33242924  T
Q  442 atttcctttcttttatctctagttt-tctctcttaatttctggagtgtgatccctactcgaattgggtcgtatca 515  Q
    ||||| |||||||||| |||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  33242925 atttcttttcttttatttctagtttctctctc-taatttctggagtgtgatctctactcgaattgggtcgtatca 33242998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 247 - 515
Target Start/End: Original strand, 4834589 - 4834869
Alignment:
Q  247 gatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaagg-tcta-----------ttgtta 334  Q
    |||||||||||||| ||  || ||||||||||||||   |||||||||||||||||||| |||||||||||||||||| ||||           || |||    
T  4834589 gatatttagaataatgactacgaatgtggtgactcagtaagttctagaagttattatgactcaccttaatctagaaggatctaaaaggagtatcttatta 4834688  T
Q  335 ggggatgatattgagtatgttagggtacacttatcttattatgagcatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaagt 434  Q
    |||||| ||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| |||||||||||||| |    
T  4834689 ggggataatattgagtatgttagggtgcacttatcttattatgagtatgcataagtctatataagcattgtatgcctcattattagaatcaatgaaaaat 4834788  T
Q  435 ataatgaatttcctttcttttatctctagttt-tctctcttaatttctggagtgtgatccctactcgaattgggtcgtatca 515  Q
    ||||||||||| |||||| || |||||||||| || ||| ||| |||||||||||||||||||||| |||||||||||||||    
T  4834789 ataatgaattttctttctcttttctctagtttctccctc-taaattctggagtgtgatccctactcaaattgggtcgtatca 4834869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 252 - 515
Target Start/End: Original strand, 7415516 - 7415789
Alignment:
Q  252 ttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaagg-tcta---------ttgttaggggatg 341  Q
    ||||||||| ||| ||||||||||||||||| ||||||||||||  |||||||| ||| |||||| ||||||| ||||         ||||||||||||     
T  7415516 ttagaataatgagtactaatgtggtgactcagctagttctagaaaatattatgactcatcttaatttagaaggatctagaaattatcttgttaggggata 7415615  T
Q  342 atattgagtatgttagggtacacttatcttattatgagcatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaagtataatga 441  Q
    ||||||||||||||| ||| |||||||||||||||||| |  || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7415616 atattgagtatgttatggtgcacttatcttattatgagtacacataagtctatataagcattgtatgccttattatgagaatcaatgaaaaatataatga 7415715  T
Q  442 atttcctttcttttatctctagttt-tctctcttaatttctggagtgtgatccctactcgaattgggtcgtatca 515  Q
    |||| |||||| || |||||||||| |||||| |||||||||||||||||||||||||| | |||| ||||||||    
T  7415716 attttctttctcttttctctagtttctctctc-taatttctggagtgtgatccctactcaagttggatcgtatca 7415789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 30513158 - 30513355
Alignment:
Q  16 atcgcgatgtaaccataatcacgaagacaacatgacagtgaaaacagttgaaaaacttggttgaaaatttagtccatgaaactcaactatttccttaaaa 115  Q
    ||||||||| |||||| |||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  30513158 atcgcgatgcaaccatgatcacgaagacaacatgacagtaacaacagttgaaaaacttg-ttgaaaatttagtccatgaaactcaactatttccttgaaa 30513256  T
Q  116 agacatgtttgtaaattgttatgtggaccataagataattctcattcaaca-tttttccagattttgtcatctatccatccttcaaccagtgtcaatca 213  Q
    | |||| |||||||||||||| |||||||||||||||| |||||||||||| |||||| |||||||| ||||||||  |||||||||||||||||||||    
T  30513257 atacatttttgtaaattgttacgtggaccataagataactctcattcaacattttttctagattttgccatctatcattccttcaaccagtgtcaatca 30513355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 252 - 515
Target Start/End: Original strand, 7422524 - 7422797
Alignment:
Q  252 ttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaagg-tcta---------ttgttaggggatg 341  Q
    ||||||||| ||| ||||||||||||||| | ||||||||||||  |||||||| ||| |||||| ||||||| ||||         ||||||||||||     
T  7422524 ttagaataatgagtactaatgtggtgacttagctagttctagaaaatattatgaatcatcttaatttagaaggatctagaagttatcttgttaggggata 7422623  T
Q  342 atattgagtatgttagggtacacttatcttattatgagcatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaagtataatga 441  Q
    | ||||||||||||| ||| |||||||||||||| ||| |  || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7422624 acattgagtatgttatggtgcacttatcttattaagagtacacataagtctatataagcattgtatgccttattatgagaatcaatgaaaaatataatga 7422723  T
Q  442 atttcctttcttttatctctagttt-tctctcttaatttctggagtgtgatccctactcgaattgggtcgtatca 515  Q
    |||| |||||| || |||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||    
T  7422724 attttctttctcttttctctagtttctctctc-taatttcttgagtgtgatccctactcgaattgggtcgtatca 7422797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 252 - 518
Target Start/End: Original strand, 7426463 - 7426739
Alignment:
Q  252 ttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaagg-tcta---------ttgttaggggatg 341  Q
    ||||||||| ||| | ||||||||||||||| ||||||||||||  |||||| | ||| |||||||||| ||| ||||         ||||||||||||     
T  7426463 ttagaataatgagtattaatgtggtgactcagctagttctagaaaatattataactcatcttaatctagtaggatctagaagttatcttgttaggggata 7426562  T
Q  342 atattgagtatgttagggtacacttatcttattatgagcatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaagtataatga 441  Q
    ||||||||||||||| ||| |||||||||||||| ||| |  || |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  7426563 atattgagtatgttatggtgcacttatcttattaagagtacacataagtctatataaacattgtatgccttattatgagaatcaatgaaaaatataatga 7426662  T
Q  442 atttcctttcttttatctctagttt-tctctcttaatttctggagtgtgatccctactcgaattgggtcgtatcagag 518  Q
    |||| |||||| || |||||| ||| ||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  7426663 attttctttctcttttctctaatttctctttc-taatttctggagtgtgatccctactcgaattgggtcgtatcagag 7426739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 540 - 606
Target Start/End: Original strand, 30513687 - 30513753
Alignment:
Q  540 ttacactgtatatacccaatctctaaccatacttcacacaaacagtgattcatcacatgtgactttt 606  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30513687 ttacactatatatacccaatctctaaccatacttcacacaaacagtgattcatcacatgtgactttt 30513753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 407 - 515
Target Start/End: Original strand, 13886583 - 13886691
Alignment:
Q  407 tgccttattatgagaatcaatgaaaagtataatgaatttcctttcttttatctctagttt-tctctcttaatttctggagtgtgatccctactcgaattg 505  Q
    ||||| ||||| |||||||||||||| |||||||||||| |||||| || |||||||||| || ||| ||| |||||||||||||||||||||| |||||    
T  13886583 tgcctcattattagaatcaatgaaaaatataatgaattttctttctcttttctctagtttctccctc-taaattctggagtgtgatccctactcaaattg 13886681  T
Q  506 ggtcgtatca 515  Q
    ||||||||||    
T  13886682 ggtcgtatca 13886691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 241 - 322
Target Start/End: Original strand, 13886454 - 13886535
Alignment:
Q  241 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaa 322  Q
    ||||| |||| ||||||||||||||||||||||||||||||  ||||||||| || ||||||||| ||||||||||||||||    
T  13886454 tgataggatagttagaataaggagcactaatgtggtgactctgctagttctataaattattatgactcaccttaatctagaa 13886535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 482 - 515
Target Start/End: Complemental strand, 16389250 - 16389217
Alignment:
Q  482 ggagtgtgatccctactcgaattgggtcgtatca 515  Q
    ||||||||||||||||||||||||||||||||||    
T  16389250 ggagtgtgatccctactcgaattgggtcgtatca 16389217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 381 - 515
Target Start/End: Original strand, 36050680 - 36050813
Alignment:
Q  381 atgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaagtataatgaatttcctttcttttatctctagttttctctcttaatttc 480  Q
    |||||||||||||||||| |||||||||||||||||||||    |||||||| ||||||||||||| |||||||||||||||||||||||| |||||||     
T  36050680 atgcacaagtctatataaacattgtatgccttattatgaggga-aatgaaaaatataatgaatttcttttcttttatctctagttttctcttttaatttt 36050778  T
Q  481 tggagtgtgatccctactcgaattgggtcgtatca 515  Q
    |||||||||||||||||||||||||||||||||||    
T  36050779 tggagtgtgatccctactcgaattgggtcgtatca 36050813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 381 - 515
Target Start/End: Original strand, 36053939 - 36054072
Alignment:
Q  381 atgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaagtataatgaatttcctttcttttatctctagttttctctcttaatttc 480  Q
    |||||||||||||||||| |||||||||||||||||||||    |||||||| ||||||||||||| |||||||||||||||||||||||| |||||||     
T  36053939 atgcacaagtctatataaacattgtatgccttattatgaggga-aatgaaaaatataatgaatttcttttcttttatctctagttttctcttttaatttt 36054037  T
Q  481 tggagtgtgatccctactcgaattgggtcgtatca 515  Q
    |||||||||||||||||||||||||||||||||||    
T  36054038 tggagtgtgatccctactcgaattgggtcgtatca 36054072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 365 - 516
Target Start/End: Original strand, 27387620 - 27387771
Alignment:
Q  365 ttatcttattatgagcatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaagtataatgaatttcctttcttttatctctagt 464  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| || |  |||||||| ||||||||||||| |||| || |||||||||    
T  27387620 ttatcttattacgaggatgcacaagtctatataagcattgtatgcctcattattagcaggaatgaaaaatataatgaatttcttttccttcatctctagt 27387719  T
Q  465 tt-tctctcttaatttctggagtgtgatccctactcgaattgggtcgtatcag 516  Q
    || || ||| ||| |||||||||||||||||||||||||||||||||||||||    
T  27387720 ttctccctc-taaattctggagtgtgatccctactcgaattgggtcgtatcag 27387771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 383 - 515
Target Start/End: Complemental strand, 55322467 - 55322334
Alignment:
Q  383 gcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaagta-taatgaatttcctttcttttatctctagttttctctcttaatttct 481  Q
    ||||||||||||||||||||||||||||| ||||| || || |||||||| || |||||||||||||||||||||||||||| ||   ||  ||| ||||    
T  55322467 gcacaagtctatataagcattgtatgcctcattattaggatgaatgaaaaataataatgaatttcctttcttttatctctagcttctacttctaaattct 55322368  T
Q  482 ggagtgtgatccctactcgaattgggtcgtatca 515  Q
    ||||||||||||||||||||||||||||||||||    
T  55322367 ggagtgtgatccctactcgaattgggtcgtatca 55322334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 365 - 513
Target Start/End: Original strand, 12638012 - 12638158
Alignment:
Q  365 ttatcttattatgagcatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaagtataatgaatttcctttcttttatctctagt 464  Q
    ||||||||| ||||| || ||||||  |||| ||||||||||||||| || || | ||||||||||||  ||||  ||||||||||||||||| |||||     
T  12638012 ttatcttataatgaggatccacaagcttataaaagcattgtatgcctcatgataataatcaatgaaaa--ataacaaatttcctttcttttatatctaga 12638109  T
Q  465 tttctctcttaatttctggagtgtgatccctactcgaattgggtcgtat 513  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  12638110 tttctctcttaatttctggagtgcgatacctactcgaattgggtcgtat 12638158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 375 - 515
Target Start/End: Original strand, 24733626 - 24733766
Alignment:
Q  375 atgagcatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaagtataatgaatttcctttcttttatctctagttttctctctt 474  Q
    |||||||| |||| | ||||||||||||||||||  | || || ||||  |||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  24733626 atgagcatccacatgcctatataagcattgtatgtttcatgattagaaggaatgaaaaatataatgaatttcctttcttttatatctagttttctctctt 24733725  T
Q  475 aatttctggagtgtgatccctactcgaattgggtcgtatca 515  Q
    ||| |||  ||||||||||||||| ||||||||| ||||||    
T  24733726 aatatctaaagtgtgatccctacttgaattgggtggtatca 24733766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 275 - 405
Target Start/End: Complemental strand, 20441168 - 20441029
Alignment:
Q  275 gtgactcatctagttctagaagttattatgagtcaccttaatctagaaggtcta---------ttgttaggggatgatattgagtatgttagggtacact 365  Q
    ||||| || ||||||||||||||| |||||| |||||||||| |||||| ||||         |||||| ||||| |||||||| |||| ||||| ||||    
T  20441168 gtgacgcagctagttctagaagttgttatgactcaccttaatttagaagatctaaaaagtatattgttaagggataatattgagcatgtcagggtgcact 20441069  T
Q  366 tatcttattatgagcatgcacaagtctatataagcattgt 405  Q
    |||||||||||||| |||||||||||| || |||||||||    
T  20441068 tatcttattatgagtatgcacaagtctgtacaagcattgt 20441029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 241 - 322
Target Start/End: Original strand, 36050519 - 36050600
Alignment:
Q  241 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaa 322  Q
    ||||| |||||||||||||| ||| ||||||||||||||||  ||||||||||||| || ||||| ||| ||||||||||||    
T  36050519 tgataggatatttagaataatgagtactaatgtggtgactcccctagttctagaaggtagtatgactcatcttaatctagaa 36050600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 241 - 322
Target Start/End: Original strand, 36053778 - 36053859
Alignment:
Q  241 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaa 322  Q
    ||||| |||||||||||||| ||| ||||||||||||||||  ||||||||||||| || ||||| ||| ||||||||||||    
T  36053778 tgataggatatttagaataatgagtactaatgtggtgactcccctagttctagaaggtagtatgactcatcttaatctagaa 36053859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 516
Target Start/End: Complemental strand, 10129665 - 10129631
Alignment:
Q  482 ggagtgtgatccctactcgaattgggtcgtatcag 516  Q
    |||||||||||||||||||||||||||||||||||    
T  10129665 ggagtgtgatccctactcgaattgggtcgtatcag 10129631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 365 - 432
Target Start/End: Original strand, 45736016 - 45736084
Alignment:
Q  365 ttatcttattatgagcatgcacaagtctatataagcattgtatgccttat-tatgagaatcaatgaaaa 432  Q
    |||| ||||||||||||| ||||| |||| ||||||||||||||||| ||  || ||||||||||||||    
T  45736016 ttatattattatgagcattcacaaatctacataagcattgtatgcctcatagattagaatcaatgaaaa 45736084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 4e-46; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 365 - 499
Target Start/End: Complemental strand, 45327554 - 45327420
Alignment:
Q  365 ttatcttattatgagcatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaagtataatgaatttcctttcttttatctctagt 464  Q
    |||||||| |||| | |||||||||||||||||||||||||||| |||||||||||||  |||||||| |||||| |||||| ||||||||||||||| |    
T  45327554 ttatcttactatgtgtatgcacaagtctatataagcattgtatgtcttattatgagaaaaaatgaaaaatataataaatttcttttcttttatctctaat 45327455  T
Q  465 tttctctcttaatttctggagtgtgatccctactc 499  Q
    |||||||||||||||||||||||||||||||||||    
T  45327454 tttctctcttaatttctggagtgtgatccctactc 45327420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 410 - 515
Target Start/End: Original strand, 31211858 - 31211963
Alignment:
Q  410 cttattatgagaatcaatgaaaagtataatgaatttcctttcttttatctctagttttctctcttaatttctggagtgtgatccctactcgaattgggtc 509  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31211858 cttattatgagaatcaatgaaaaatataatgaattttctttcttttatctctagttttctctcttaatttctggagtgtgatccctactcgaattggatc 31211957  T
Q  510 gtatca 515  Q
    ||||||    
T  31211958 gtatca 31211963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 434 - 506
Target Start/End: Original strand, 31193246 - 31193318
Alignment:
Q  434 tataatgaatttcctttcttttatctctagttttctctcttaatttctggagtgtgatccctactcgaattgg 506  Q
    |||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31193246 tataataaattttctttctttcatctctagttttctctcttaatttctagagtgtgatccctactcgaattgg 31193318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 284 - 407
Target Start/End: Original strand, 31211598 - 31211731
Alignment:
Q  284 ctagttctagaagttattatgagtcaccttaatctagaagg----------tctattgttaggggatgatattgagtatgttagggtacacttatcttat 373  Q
    ||||||||||||||| |||||| |||| |||||||||||||          | |||||||||||||| |||||||||||||||| || |||||||||||     
T  31211598 ctagttctagaagttgttatgactcactttaatctagaaggatttagaagatatattgttaggggataatattgagtatgttagagtgcacttatcttaa 31211697  T
Q  374 tatgagcatgcacaagtctatataagcattgtat 407  Q
    |||||| ||||| ||||||||||||| |||||||    
T  31211698 tatgagtatgcataagtctatataagtattgtat 31211731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 466 - 515
Target Start/End: Complemental strand, 40400958 - 40400909
Alignment:
Q  466 ttctctcttaatttctggagtgtgatccctactcgaattgggtcgtatca 515  Q
    |||||||| ||||||||||||||||||||||||||||||| ||| |||||    
T  40400958 ttctctctaaatttctggagtgtgatccctactcgaattgagtcatatca 40400909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 241 - 324
Target Start/End: Original strand, 4472702 - 4472785
Alignment:
Q  241 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaagg 324  Q
    ||||| |||| ||| ||||||||||| | || |||||||||| |||||||||||||  |  |||| ||||||||||||||||||    
T  4472702 tgataggatagttaaaataaggagcatttatatggtgactcacctagttctagaagcaaagatgattcaccttaatctagaagg 4472785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 487
Target Start/End: Original strand, 28860754 - 28860873
Alignment:
Q  366 tatcttattatgagcatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaagtataatgaatttcctttcttttatctctagtt 465  Q
    |||||||| ||||| || |||||  ||||| |||||  | |||||| || || | ||||||||||||  ||||  |||||  |||||| | |||||||||    
T  28860754 tatcttataatgaggatccacaaacctataaaagcaccgaatgcctcatgattaaaatcaatgaaaa--ataacaaattttatttcttctgtctctagtt 28860851  T
Q  466 ttctctcttaatttctggagtg 487  Q
    ||||||||||||||||||||||    
T  28860852 ttctctcttaatttctggagtg 28860873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 416
Target Start/End: Complemental strand, 40401048 - 40400997
Alignment:
Q  365 ttatcttattatgagcatgcacaagtctatataagcattgtatgccttatta 416  Q
    ||||||||| ||||| |||||||||||||| ||||||| |||||||| ||||    
T  40401048 ttatcttatcatgagtatgcacaagtctatttaagcatagtatgcctcatta 40400997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 381 - 515
Target Start/End: Original strand, 44761983 - 44762117
Alignment:
Q  381 atgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaagtataatgaatttcctttcttttatctctagttt-tctctcttaattt 479  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||  ||||| || ||| |||||| || ||| ||| ||    
T  44761983 atgcacaagtctatataaacattgtatgccttattatgaaaatcaatgaaaaatataatgaattttttttctcttttctatagtttctccctc-taaatt 44762081  T
Q  480 ctggagtgtgatccctactcgaattgggtcgtatca 515  Q
    ||||||||||||||||||||||||||||||||||||    
T  44762082 ctggagtgtgatccctactcgaattgggtcgtatca 44762117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 381 - 516
Target Start/End: Original strand, 44765290 - 44765425
Alignment:
Q  381 atgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaagtataatgaatttcctttcttttatctctagttt-tctctcttaattt 479  Q
    |||||||||||||||||| |||||||| ||||||||||| |||||||||||| |||||||||||| |||||| || ||| |||||| || ||| ||| ||    
T  44765290 atgcacaagtctatataaacattgtattccttattatgaaaatcaatgaaaaatataatgaattttctttctcttttctatagtttctccctc-taaatt 44765388  T
Q  480 ctggagtgtgatccctactcgaattgggtcgtatcag 516  Q
    ||||||||| |||||||||||||||||||||||||||    
T  44765389 ctggagtgtaatccctactcgaattgggtcgtatcag 44765425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 419 - 513
Target Start/End: Original strand, 11825056 - 11825148
Alignment:
Q  419 agaatcaatgaaaagtataatgaatttcctttcttttatctctagttttctctcttaatttctggagtgtgatccctactcgaattgggtcgtat 513  Q
    ||||| ||||||||  ||||| ||||||||||||||||||| || |||||||||||||||| |||||||||||||||| |||||||| |||||||    
T  11825056 agaatgaatgaaaa--ataatcaatttcctttcttttatctttaattttctctcttaatttatggagtgtgatccctattcgaattgagtcgtat 11825148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 513
Target Start/End: Original strand, 23090074 - 23090152
Alignment:
Q  435 ataatgaatttcctttcttttatctctagttttctctcttaatttctggagtgtgatccctactcgaattgggtcgtat 513  Q
    ||||| ||||| |||||||||||||||  ||||||||| |||||| ||||||| ||| |||| || |||||||| ||||    
T  23090074 ataatcaattttctttcttttatctctgattttctctcataatttatggagtgcgattcctattcaaattgggttgtat 23090152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 452 - 513
Target Start/End: Complemental strand, 1495811 - 1495750
Alignment:
Q  452 ttttatctctagttttctctcttaatttctggagtgtgatccctactcgaattgggtcgtat 513  Q
    |||||||||||||||||| || |||||| || |||| ||| |||| ||||||||||||||||    
T  1495811 ttttatctctagttttctttcataatttatgaagtgcgattcctattcgaattgggtcgtat 1495750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 241 - 322
Target Start/End: Original strand, 44765129 - 44765210
Alignment:
Q  241 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaa 322  Q
    ||||| ||||| |||||||||||  |  |||||||||||||  ||||||||||||| || ||||| ||| ||||||||||||    
T  44765129 tgataggatatctagaataaggaatataaatgtggtgactcccctagttctagaaggtagtatgactcatcttaatctagaa 44765210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 296
Target Start/End: Original strand, 24249050 - 24249105
Alignment:
Q  241 tgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaag 296  Q
    ||||| |||||| | ||||||||||||| ||||||||| || ||||||||||||||    
T  24249050 tgataggatattcaaaataaggagcactcatgtggtgattcgtctagttctagaag 24249105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 482 - 516
Target Start/End: Complemental strand, 32519656 - 32519622
Alignment:
Q  482 ggagtgtgatccctactcgaattgggtcgtatcag 516  Q
    |||||||||||||||||||||||||||| ||||||    
T  32519656 ggagtgtgatccctactcgaattgggtcctatcag 32519622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 322
Target Start/End: Original strand, 44761822 - 44761904
Alignment:
Q  240 gtgatatgatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgagtcaccttaatctagaa 322  Q
    |||||| ||||| |||||||||||  |  |||||||||||||  ||||||||||||| || | ||| ||| ||||||||||||    
T  44761822 gtgataggatatctagaataaggaatataaatgtggtgactcccctagttctagaaggtagtttgactcatcttaatctagaa 44761904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 456
Target Start/End: Complemental strand, 14276685 - 14276620
Alignment:
Q  392 tatataagcattgta-tgccttattatgagaatcaatgaaaagtataatgaatttcctttctttta 456  Q
    ||||||||||||||| ||| | || || | |||||||||||| |||||| ||||||||||||||||    
T  14276685 tatataagcattgtaatgcttcatgattaaaatcaatgaaaaatataatcaatttcctttctttta 14276620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University