View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18803_low_4 (Length: 476)
Name: NF18803_low_4
Description: NF18803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18803_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 12147056 - 12146731
Alignment:
| Q |
13 |
aatatgtgtcaaagctggactcgagaaaaagttacttgaaaattgtatctcataataaaattcattgattcattcatatttgttgttcaagataaaggaa |
112 |
Q |
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| T |
12147056 |
aatatgtgtcaaagctggactcgagaaaaagttacttgaaaattgtatctcataataaaattcattgattcattcatatttgttgttcaagataaaggaa |
12146957 |
T |
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| Q |
113 |
atacaactacttgatatgttttctattctatgtttacaatcatttctagtagaggcaactgttaccttgcaatgttgtcaaaacagaactggatcagtcg |
212 |
Q |
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| T |
12146956 |
atacaactacttgatatgttttctattctatgtttacaatcatttctagtagaggcaactgttaccttgcaatgttgtcaaaacagaactggatcagtcg |
12146857 |
T |
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| Q |
213 |
gttcaaccggtttaaccagaaattggaaaatcttccagttggtttaaccatgacagattgatccttaatttttatagttgatcaaaccaagtggaaccag |
312 |
Q |
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| T |
12146856 |
gttcaaccggtttaaccagaaattggaaaatcttccggttggtttaaccatgacggattgatccttaatttttatagttgatcaaaccaagtggaaccag |
12146757 |
T |
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| Q |
313 |
attcaaccagtttgaaccgtggttga |
338 |
Q |
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| T |
12146756 |
attcaaccagtttgaaccgtggttga |
12146731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 330 - 461
Target Start/End: Complemental strand, 12146702 - 12146571
Alignment:
| Q |
330 |
cgtggttgaaatgattgaaccaactgaaaacctagttgattcgattcgatcttcggtctagttctaaaaacactcaaagtttaaacgtagaagtggtagt |
429 |
Q |
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| T |
12146702 |
cgtggttgaaatgattgaaccaaccgaaaacctagttgattcgattcgatctccggtctagttctaaaaacactcaaagtttaaacgtagaagttgtagt |
12146603 |
T |
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| Q |
430 |
tgggtatgggagaaagaatatagtgatgataa |
461 |
Q |
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| T |
12146602 |
tgggtatgggagaaagaatatagtgatgataa |
12146571 |
T |
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