View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18803_low_5 (Length: 300)
Name: NF18803_low_5
Description: NF18803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18803_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 24214437 - 24214675
Alignment:
| Q |
13 |
aatatggagaaaatgttgaataagaagagataaa-gattaagggnnnnnnnctttggtggtgcaagtaaattacaatagactattataatannnnnnnnn |
111 |
Q |
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| T |
24214437 |
aatatgaagaaaatgttgaataagaagagataaaagatta-ggggaaaaaactttggtcgtgcaaataaattacaatagactattataatctttttactt |
24214535 |
T |
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| Q |
112 |
nnnngcactattgattaatataactaattaaatattaagagattttgagtaacggagtatagatagggttgaacatttggaaaaactcacattgagtaaa |
211 |
Q |
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| T |
24214536 |
ttttgcactattgattaatataactaattaaatattaagagattttgagtagcggggcatagatagtgttgaacacttagaaaaaatcacattgaggaaa |
24214635 |
T |
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| Q |
212 |
acatatatttttcttaataattaattgataacttactaca |
251 |
Q |
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| T |
24214636 |
acatatatttttcttaataattaattgataacttactaca |
24214675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 36625923 - 36625880
Alignment:
| Q |
119 |
ctattgattaatataactaattaaatattaagagattttgagta |
162 |
Q |
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| T |
36625923 |
ctattaattaatttaactatttaaatattaagagattttgagta |
36625880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 10682575 - 10682530
Alignment:
| Q |
117 |
cactattgattaatataactaattaaatattaagagattttgagta |
162 |
Q |
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| T |
10682575 |
cacttttgattaatttaaataattaaatattaagagattttgagta |
10682530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 12843552 - 12843514
Alignment:
| Q |
122 |
ttgattaatataactaattaaatattaagagattttgag |
160 |
Q |
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| T |
12843552 |
ttgattaatttaactaattaaatattaagaaattttgag |
12843514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 26090178 - 26090138
Alignment:
| Q |
117 |
cactattgattaatataactaattaaatattaagagatttt |
157 |
Q |
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| T |
26090178 |
cactattaattaatttaactaattaaatcttaagagatttt |
26090138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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