View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18804_high_11 (Length: 371)
Name: NF18804_high_11
Description: NF18804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18804_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 8372029 - 8372363
Alignment:
| Q |
18 |
ctttaagcatatctcttaattaactaaccttttggtatcttcataaaaaagaaagtgatttggtcgctttacatgagacaaagaattctgtggaagaaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8372029 |
ctttaagcatatctcttaattaactaaccttttggtatcttcataaaaaagaaagtgatttggtcgctttacatgagacaaagaattctgtggaagaaca |
8372128 |
T |
|
| Q |
118 |
tgcaaggttcaatgtatgaacatacaaggtgttttcttatgtacattaaactaaacaaaagtatcatcaccacctttcatgaactccaattgaaaagcta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8372129 |
tgcaaggttcaatgtatgaacatacaaggtgttttcttatgtacattaaactaaacaaaagtatcatcaccacctttcatgaactccaattgaaaagcta |
8372228 |
T |
|
| Q |
218 |
aaaacattaaattaattattttctccaacttatgaatgattttagcagcccaaaaagttatgatttaggtaaatgataagtggtactnnnnnnntaattt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8372229 |
aaaacattaaattaattattttctccaacttatgaatgattttagcagcccaaaaagttatgatttaggtaaatgataagtggtactaaaaaaataattt |
8372328 |
T |
|
| Q |
318 |
gtttaataatcctctccttccttttgaaagcatta |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
8372329 |
gtttaataatcctctccttccttttgaaagcatta |
8372363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University