View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18804_high_13 (Length: 352)
Name: NF18804_high_13
Description: NF18804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18804_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 37385439 - 37385772
Alignment:
| Q |
1 |
agttgcaaactgtgagatgttaaagctagggtccaagtatgccggtatgtatggtttgataccaaatgcttctgatatgaaatcagtcgctattctacca |
100 |
Q |
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| T |
37385439 |
agttgcaaactgtgagatgttaaagctagggtccaagtatgctggtatgtatggtttgataccaaatgcttctgatatgaaatcagttgctattctacca |
37385538 |
T |
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| Q |
101 |
ttgctgaatctcccagttggcttcccacccagaaaatcacgtccatacggctggaaattgctccgagcaaccgtcgatatgaagttgttgttcccggcat |
200 |
Q |
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| T |
37385539 |
ttgctgaatctcccagttggcttcccacccagaaaatcacgtccatacggctggaaattgctccgagcaaccgtcgatatgaagttgttgttcccggcat |
37385638 |
T |
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| Q |
201 |
ccacggatgagtcgccgaacactatgatcgccggaaccttagcactctttactaaggagagatcaagccattgaagcaaaaggaagcacagaa---tgtt |
297 |
Q |
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| T |
37385639 |
ccacggatgagtcgccgaacactatgatcgccggaaccttagcactctttactaaggagagatcaagccattgaagcaaaaggatgcacagaatattgtt |
37385738 |
T |
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| Q |
298 |
tgtgtatagaaggttctttctctgtcctcctttc |
331 |
Q |
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| T |
37385739 |
tgtgtatagaaggttctttctctgtcctcctttc |
37385772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 132 - 246
Target Start/End: Complemental strand, 36599127 - 36599013
Alignment:
| Q |
132 |
gaaaatcacgtccatacggctggaaattgctccgagcaaccgtcgatatgaagttgttgttcccggcatccacggatgagtcgccgaacactatgatcgc |
231 |
Q |
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|||| ||||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||||||| ||||| ||||| |||||||| || || || |
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| T |
36599127 |
gaaagtcacgtccatacggctgaaaattgctccgtgcaaccgtcggaatgaagttgttattcccggcatcaacggaagagtctccgaacacgattattgc |
36599028 |
T |
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| Q |
232 |
cggaaccttagcact |
246 |
Q |
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||||||||| ||||| |
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| T |
36599027 |
cggaacctttgcact |
36599013 |
T |
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