View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18804_high_15 (Length: 340)
Name: NF18804_high_15
Description: NF18804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18804_high_15 |
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| [»] scaffold0290 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 31 - 325
Target Start/End: Complemental strand, 3556400 - 3556107
Alignment:
| Q |
31 |
cttaacttacttagagttcttgctaatattctagttctcgatgacctacgtcgaggctcaatggtattcc-attcttagatttatcactacccaaacata |
129 |
Q |
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| T |
3556400 |
cttaacctacttaggtttcatactaacatactagttctcgaagacctacgtcgaggctctatggtattcccattcatagatttatcgctacccgaacata |
3556301 |
T |
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| Q |
130 |
aacatgtttaaactctcgtgtgccatacattactgaacaatgccgatgtttgctcatacatttctcttgatagaatcttacgtagtaatgtacatatcac |
229 |
Q |
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| T |
3556300 |
aacatgtttaaactct-gtgtgccatacattaccgaacaatgccgatgtttgctcatacatttctcttgatagaatcttaggtagtaatgtacatatcac |
3556202 |
T |
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| Q |
230 |
ttccaaaaggtataaaaacattgagaatgattagcctggtaaacattaacatcagtttagcaattatagcacaaagggggtactaatttcctaatt |
325 |
Q |
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| T |
3556201 |
ttccagaaagtataaaaacattgagaatgattagcatgacaaacattaacataattttagaaattatagcacaaa-ggggtactaatttcctaatt |
3556107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 15561677 - 15561600
Alignment:
| Q |
18 |
tatcaattcacaacttaacttacttagagttcttgctaatattctagttctcgatgacctacgtcgaggctcaatggt |
95 |
Q |
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| T |
15561677 |
tatcaattcacagcttaacttacttagagttcttgctaacattctagttctcgacgatctatgtcgaggctctatggt |
15561600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 10 - 146
Target Start/End: Complemental strand, 21888772 - 21888636
Alignment:
| Q |
10 |
attattcttatcaattcacaacttaacttacttagagttcttgctaatattctagttctcgatgacctacgtcgaggctcaatgg---tattccattctt |
106 |
Q |
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| T |
21888772 |
attatacttatcaattcacgacttaacttacttggagttctttctaccattctagttctcgacgatctatgtcgaggctctatggttttactccactctt |
21888673 |
T |
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| Q |
107 |
agatttatcactacccaaacataaacatgtttaaactctc |
146 |
Q |
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| T |
21888672 |
ag-tttatcgctacccga--ataaacatgcttaaactctc |
21888636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 5265 - 5154
Alignment:
| Q |
45 |
agttcttgctaatattctagttctcgatgacctacgtcgaggctcaatggtatt-ccattcttagatttatcactacccaaacataaacatgtttaaact |
143 |
Q |
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| T |
5265 |
agttcatgctaacatactaatgctcgacgacctacgtcgaggctctatggcattaccattcttaggtttatcgctacccgaacatataaatatttaaact |
5166 |
T |
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| Q |
144 |
ctcgtgtgccat |
155 |
Q |
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| T |
5165 |
ctcttgggccat |
5154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 43516506 - 43516425
Alignment:
| Q |
8 |
agattattcttatcaattcacaacttaacttacttagagttcttgctaatattctagttctcgatgacctacgtcgaggctc |
89 |
Q |
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| T |
43516506 |
agattatgcctatcacttcacaacttaacttgcttagggttcttgctaactttctagttctcgacgatctatgttgaggctc |
43516425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 24057764 - 24057698
Alignment:
| Q |
18 |
tatcaattcacaacttaacttacttagagttcttgctaatattctagttctcgatgacctacgtcga |
84 |
Q |
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| T |
24057764 |
tatcaattcacgacttaacttgcttagggttcttgctaactttcttgttctcgacgatctacgtcga |
24057698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 24540156 - 24540228
Alignment:
| Q |
18 |
tatcaattcacaacttaacttacttagagttcttgctaatattctag-ttctcgatgacctacgtcgaggctc |
89 |
Q |
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| T |
24540156 |
tatcaattcacggcttaacttacttaaggttcttgctaactttctagtttctcgacgatctatgtcgaggctc |
24540228 |
T |
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