View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18804_high_9 (Length: 428)
Name: NF18804_high_9
Description: NF18804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18804_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 410
Target Start/End: Complemental strand, 6265485 - 6265092
Alignment:
| Q |
17 |
aagatatgtcaggttctggaaatggggtccctacagctttggctatatctaatgccataactaatctatgtggtatgcacttacaaaacagtttcttcat |
116 |
Q |
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| T |
6265485 |
aagatatgtcaggttctggaaatggggtccctacagctttggctatatctaatgccataactaatctatgtggtatgcatttaaaaaacagtttcttcat |
6265386 |
T |
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| Q |
117 |
gctagtttttgggttgaatttaatgaaatttgaattctaaagttttgatatttttatacatttcttgaatctgtagccactgtttttggccaactttgga |
216 |
Q |
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| T |
6265385 |
gctagttttggtgttgaatttaatggaacttgaattctaaaattttgatatttttatacatttcttgaatctttagccactgtttttggccaactttgga |
6265286 |
T |
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| Q |
217 |
gattggaaccactttcaccagaaaagaaagcaatgtggcaaagagagatggaatggcttctttgtgttagtgatcatattgttgaatttaagcctacttg |
316 |
Q |
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| T |
6265285 |
gattggaacctctgtcaccagagaagaaagcaatgtggcaaagagagatggaatggcttctttgtgttagtgatcatattgttgaattcaagcctacttg |
6265186 |
T |
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| Q |
317 |
gcaaacatttccagatggaagcaggtttgaggtacaagtataactttggaaagaattttaatgtgaacttatacaggggtatgaagtatctgtg |
410 |
Q |
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| T |
6265185 |
gcaaacatttccagatggaagcaggtttgaggtacaagtataactttagaaagaattttaatgtgaacttatacaggggtatgaagtatctgtg |
6265092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 23783394 - 23783318
Alignment:
| Q |
17 |
aagatatgtcaggttctggaaatggggtccctacagctttggctatatctaatgccataactaatctatgtggtatg |
93 |
Q |
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| T |
23783394 |
aagatatgtcaggttgtggaaatggggtccctacagcgttggctatctcaaatgccataactaatctatgtggtatg |
23783318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 243 - 339
Target Start/End: Complemental strand, 23782904 - 23782808
Alignment:
| Q |
243 |
aaagcaatgtggcaaagagagatggaatggcttctttgtgttagtgatcatattgttgaatttaagcctacttggcaaacatttccagatggaagca |
339 |
Q |
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| T |
23782904 |
aaagcaatgtggcgaagagagatggagtggtttctttctgttagtgatcatattgttgaattaacgcctaattggcagacttttcctgatggaagca |
23782808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 248 - 336
Target Start/End: Complemental strand, 31129855 - 31129767
Alignment:
| Q |
248 |
aatgtggcaaagagagatggaatggcttctttgtgttagtgatcatattgttgaatttaagcctacttggcaaacatttccagatggaa |
336 |
Q |
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| T |
31129855 |
aatgtggcaaagagagatggaatggcttgttagtgttagtgatcacattgttgaattaataccttcttggcaaacatttcctgatggaa |
31129767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 31130727 - 31130651
Alignment:
| Q |
17 |
aagatatgtcaggttctggaaatggggtccctacagctttggctatatctaatgccataactaatctatgtggtatg |
93 |
Q |
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| T |
31130727 |
aagatatgtcaggttcaggaaaaggggtttgcactgctttggcaatctctaatgccattactaatctttgtggtatg |
31130651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 334
Target Start/End: Complemental strand, 34864710 - 34864613
Alignment:
| Q |
237 |
gaaaagaaagcaatgtggcaaagagagatggaatggcttctttgtgttagtgatcatattgttgaatttaagcctacttggcaaacatttccagatgg |
334 |
Q |
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| T |
34864710 |
gaaaagaaagaaaagtggcagagagaaatggattggcttctttgtgttggtgatcacattgttgagttaatgccttcttggcaaacatatccagatgg |
34864613 |
T |
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