View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18804_low_12 (Length: 369)
Name: NF18804_low_12
Description: NF18804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18804_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 32579647 - 32579837
Alignment:
| Q |
12 |
aatactcattgtgagattcgttcatcgcagcacaacggcatggacgtagacaaatctacctgggcattggataataagaattaagctcttcccagtaaaa |
111 |
Q |
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| T |
32579647 |
aatactcattgtgagattcgttcatcgcagcacaacggcatggacgtagacaaatctacctgggcattggatgataagaattaagctcttcccagtaaaa |
32579746 |
T |
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| Q |
112 |
ttagagacttggaatgtggagtaacttgcaactaattattagtgacttggaatacaagtaagctaagtaaactaccattcctcactactta |
202 |
Q |
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| T |
32579747 |
ttagagacttggaatgtggagtaacttgcaactaattattagtgacttggaatacaagtaagctaagtaaactaccattcctcactactta |
32579837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 174 - 354
Target Start/End: Original strand, 32579845 - 32580025
Alignment:
| Q |
174 |
ctaagtaaactaccattcctcactacttaaacttgttagagaaattaattggtttttattaaagcggtttttaagaaacttatcatgcgacttaacaaat |
273 |
Q |
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| T |
32579845 |
ctaagtacactaccattcctcactacttaaacttgttagagaaattaattggtttttattaaagcggtttttaagaaacttatcatgtgacttaacaaat |
32579944 |
T |
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| Q |
274 |
gacttccattactcattttcaattataagtaaataaatcgtatgtttagagatcaaattatagtcatgtatggatcttcgt |
354 |
Q |
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| T |
32579945 |
gacttccattactcattttcaattataagtaaataaatcgcatgttcagagatcaaattatagtcatgtatggatcttcgt |
32580025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 32599595 - 32599659
Alignment:
| Q |
238 |
cggtttttaagaaacttatcatgcgacttaacaaatgacttccattactcattttcaattataagt |
303 |
Q |
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| T |
32599595 |
cggtttttaagaaacttatcatatgatttaataaatgacgtcaatgactca-tttcaattataagt |
32599659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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