View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18804_low_14 (Length: 341)

Name: NF18804_low_14
Description: NF18804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18804_low_14
NF18804_low_14
[»] chr3 (20 HSPs)
chr3 (227-341)||(36383078-36383192)
chr3 (46-120)||(36367825-36367899)
chr3 (46-115)||(36378568-36378637)
chr3 (238-339)||(15005049-15005150)
chr3 (239-335)||(15031312-15031408)
chr3 (238-335)||(14434731-14434828)
chr3 (238-330)||(43562696-43562788)
chr3 (238-312)||(1426575-1426649)
chr3 (238-339)||(48755418-48755520)
chr3 (238-339)||(11989132-11989233)
chr3 (257-341)||(33343115-33343198)
chr3 (275-335)||(44967983-44968043)
chr3 (232-339)||(18445492-18445599)
chr3 (238-324)||(15031279-15031365)
chr3 (257-335)||(26498639-26498717)
chr3 (240-329)||(26920248-26920337)
chr3 (266-335)||(38498222-38498291)
chr3 (238-330)||(21514835-21514927)
chr3 (282-339)||(41984992-41985049)
chr3 (303-335)||(20759083-20759115)
[»] chr7 (11 HSPs)
chr7 (238-337)||(14197548-14197647)
chr7 (238-339)||(27508667-27508768)
chr7 (234-333)||(6441437-6441536)
chr7 (236-339)||(45012935-45013038)
chr7 (250-335)||(43257355-43257440)
chr7 (234-339)||(38761079-38761184)
chr7 (240-339)||(5080196-5080295)
chr7 (234-335)||(37787778-37787879)
chr7 (238-330)||(15000737-15000829)
chr7 (264-335)||(36150933-36151004)
chr7 (257-324)||(45012982-45013049)
[»] chr4 (27 HSPs)
chr4 (238-341)||(10380680-10380783)
chr4 (238-341)||(5448287-5448390)
chr4 (238-337)||(18830663-18830762)
chr4 (238-339)||(5324770-5324871)
chr4 (238-330)||(2634120-2634212)
chr4 (238-335)||(11821814-11821911)
chr4 (234-335)||(1387369-1387470)
chr4 (238-314)||(3370056-3370132)
chr4 (257-324)||(1387444-1387511)
chr4 (232-339)||(9826717-9826824)
chr4 (238-324)||(37695034-37695120)
chr4 (238-335)||(30470909-30471006)
chr4 (240-336)||(18500691-18500787)
chr4 (257-337)||(22017971-22018051)
chr4 (257-335)||(10757661-10757739)
chr4 (257-335)||(10970832-10970910)
chr4 (239-341)||(47144781-47144883)
chr4 (238-339)||(2063237-2063338)
chr4 (238-337)||(2232461-2232558)
chr4 (257-315)||(8951131-8951189)
chr4 (238-336)||(18836369-18836466)
chr4 (255-324)||(18830708-18830777)
chr4 (257-330)||(30378852-30378924)
chr4 (238-335)||(37694991-37695088)
chr4 (234-335)||(47943539-47943640)
chr4 (234-315)||(55382667-55382748)
chr4 (259-315)||(3370045-3370101)
[»] scaffold0407 (6 HSPs)
scaffold0407 (239-339)||(922-1022)
scaffold0407 (239-339)||(7386-7486)
scaffold0407 (234-324)||(969-1059)
scaffold0407 (234-324)||(7433-7523)
scaffold0407 (234-286)||(943-995)
scaffold0407 (234-286)||(7407-7459)
[»] chr5 (16 HSPs)
chr5 (238-330)||(2555530-2555622)
chr5 (238-339)||(30852670-30852771)
chr5 (238-335)||(17497086-17497183)
chr5 (232-339)||(19491757-19491864)
chr5 (234-315)||(12895615-12895695)
chr5 (238-335)||(21943834-21943931)
chr5 (239-339)||(20429964-20430064)
chr5 (234-329)||(19564752-19564847)
chr5 (242-339)||(13753316-13753413)
chr5 (242-341)||(10760093-10760191)
chr5 (278-335)||(21211508-21211565)
chr5 (255-334)||(31912288-31912367)
chr5 (232-286)||(32539375-32539429)
chr5 (238-335)||(11298050-11298147)
chr5 (262-335)||(34419595-34419668)
chr5 (257-329)||(30100708-30100780)
[»] chr2 (10 HSPs)
chr2 (238-337)||(31820005-31820104)
chr2 (257-339)||(32092846-32092928)
chr2 (250-339)||(17914076-17914165)
chr2 (234-335)||(39598598-39598699)
chr2 (238-337)||(22092951-22093050)
chr2 (257-324)||(39598641-39598708)
chr2 (254-324)||(8219214-8219284)
chr2 (238-335)||(31499441-31499538)
chr2 (238-312)||(8219230-8219304)
chr2 (238-339)||(24006967-24007068)
[»] chr1 (6 HSPs)
chr1 (238-336)||(37608063-37608161)
chr1 (234-339)||(50335528-50335633)
chr1 (238-329)||(13735536-13735627)
chr1 (257-324)||(50335519-50335586)
chr1 (259-315)||(13735525-13735581)
chr1 (240-300)||(32374092-32374152)
[»] scaffold0011 (1 HSPs)
scaffold0011 (234-339)||(190265-190370)
[»] chr8 (16 HSPs)
chr8 (238-327)||(31253995-31254084)
chr8 (238-339)||(35202689-35202791)
chr8 (238-333)||(4289018-4289113)
chr8 (238-339)||(23976178-23976279)
chr8 (238-333)||(41358775-41358870)
chr8 (234-339)||(18324084-18324189)
chr8 (234-339)||(25149325-25149430)
chr8 (234-302)||(29585574-29585642)
chr8 (234-330)||(37543888-37543984)
chr8 (238-339)||(22469520-22469620)
chr8 (238-318)||(24609134-24609214)
chr8 (281-339)||(12106954-12107012)
chr8 (240-320)||(21124420-21124500)
chr8 (257-324)||(25149372-25149439)
chr8 (257-324)||(29585584-29585651)
chr8 (270-339)||(37494396-37494465)
[»] chr6 (11 HSPs)
chr6 (238-335)||(19295372-19295469)
chr6 (232-339)||(21222552-21222659)
chr6 (238-335)||(25089243-25089340)
chr6 (238-330)||(10862104-10862196)
chr6 (236-327)||(10672717-10672808)
chr6 (257-324)||(19295415-19295482)
chr6 (238-339)||(13536651-13536753)
chr6 (239-315)||(12651194-12651269)
chr6 (275-335)||(26705156-26705216)
chr6 (257-324)||(21222599-21222666)
chr6 (240-324)||(26705089-26705173)
[»] scaffold0003 (2 HSPs)
scaffold0003 (238-339)||(314169-314270)
scaffold0003 (259-324)||(314158-314223)
[»] scaffold0026 (1 HSPs)
scaffold0026 (232-339)||(57534-57641)
[»] scaffold1300 (1 HSPs)
scaffold1300 (257-339)||(1460-1542)
[»] scaffold0102 (1 HSPs)
scaffold0102 (239-337)||(23984-24082)
[»] scaffold0049 (1 HSPs)
scaffold0049 (276-339)||(59792-59855)
[»] scaffold0024 (1 HSPs)
scaffold0024 (232-339)||(127889-127996)
[»] scaffold0039 (1 HSPs)
scaffold0039 (291-339)||(27576-27624)
[»] scaffold0047 (1 HSPs)
scaffold0047 (257-339)||(11683-11765)
[»] scaffold0066 (1 HSPs)
scaffold0066 (238-335)||(15456-15553)


Alignment Details
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 227 - 341
Target Start/End: Original strand, 36383078 - 36383192
Alignment:
Q  227 tttgaatactttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaat 326  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||| ||||    
T  36383078 tttgaatactttgttagtcaatttaatccttgaatgcagactttgttggtcaatttagtctctgaatatagacttcgttagtcactttagtccctaaaat 36383177  T
Q  327 tgactaacagagttt 341  Q
    |||||||||||||||    
T  36383178 tgactaacagagttt 36383192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 36367825 - 36367899
Alignment:
Q  46 gtagaaataatgcttttgttgatgagttaacttctattatgagcacaactgaacatgctaagcaagaaggctgga 120  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||| ||||    
T  36367825 gtagaaataatgcttttgttgatgagttaacttttattatgagcacaaatgaacatgctaaacaagaaggttgga 36367899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 36378568 - 36378637
Alignment:
Q  46 gtagaaataatgcttttgttgatgagttaacttctattatgagcacaactgaacatgctaagcaagaagg 115  Q
    |||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||    
T  36378568 gtagaaataatgcttttgttgatgtgttaacttttattatgaccacaattgaacatgctaagcaagaagg 36378637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 238 - 339
Target Start/End: Original strand, 15005049 - 15005150
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 337  Q
    |||||||||||||||| | ||||||||||||  ||| || |||||||||  | |||||| |||| ||||||||||| ||||||||||||||||  |||||    
T  15005049 tgttagtcaatttaatccctgaatgcagactcagttagttaatttagtccttgaatgtatactttgttagtcacttaaatccctgaaattgaccgacaga 15005148  T
Q  338 gt 339  Q
    ||    
T  15005149 gt 15005150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 335
Target Start/End: Original strand, 15031312 - 15031408
Alignment:
Q  239 gttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 335  Q
    ||||||||||||| |   |||||| |||||  ||| |||||||||||| || |||||||||| |||||||||||||| |||||||||||||| ||||    
T  15031312 gttagtcaatttagtcactgaatgtagactccgttagtcaatttagtcactgaatgtagactccgttagtcactttagtccctgaaattgaccaaca 15031408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 14434828 - 14434731
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 335  Q
    |||||||||||||| | | |||||||| |||  | | || |||||||||||| |||||||||| || ||||||||||| ||||||||||| |||||||    
T  14434828 tgttagtcaatttagtccctgaatgcaaactcagatagttaatttagtctctgaatgtagactccgctagtcactttagtccctgaaattaactaaca 14434731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 330
Target Start/End: Complemental strand, 43562788 - 43562696
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgac 330  Q
    |||| |||||||||||  ||||||||||||||  || ||||||||| || || ||||||||| ||||||||||||||| || || ||||||||    
T  43562788 tgtttgtcaatttaatcgttgaatgcagacttcattagtcaatttaatccctgaatgtagacatcgttagtcactttagtctctaaaattgac 43562696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 312
Target Start/End: Original strand, 1426575 - 1426649
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcact 312  Q
    |||||||||||||| | | ||||||||||||  ||| |||||||||||| || |||||||||| |||||||||||    
T  1426575 tgttagtcaatttagtccctgaatgcagactccgttagtcaatttagtccctaaatgtagactccgttagtcact 1426649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 339
Target Start/End: Original strand, 48755418 - 48755520
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagact-tcgttagtcactttaatccctgaaattgactaacag 336  Q
    |||||||||||||| | | ||||||||||||  ||| ||||||||||||  | ||||||||||   |||||||||||| | ||||||||||||| |||||    
T  48755418 tgttagtcaatttagtccctgaatgcagactccgttagtcaatttagtccatgaatgtagactcgtgttagtcactttgacccctgaaattgaccaacag 48755517  T
Q  337 agt 339  Q
    |||    
T  48755518 agt 48755520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 339
Target Start/End: Complemental strand, 11989233 - 11989132
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 337  Q
    ||||||||||| || | | ||||||||||||  |||  |||||||||||  | |||||||||| |||||| ||||||| || ||||||||||| ||||||    
T  11989233 tgttagtcaatctagtccctgaatgcagactccgttaatcaatttagtccttaaatgtagactccgttagccactttagtctctgaaattgaccaacaga 11989134  T
Q  338 gt 339  Q
    ||    
T  11989133 gt 11989132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 341
Target Start/End: Original strand, 33343115 - 33343198
Alignment:
Q  257 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagttt 341  Q
    |||||||| ||| |||| |||||||||||| || ||||||||||| |||| ||| |||| | |||||||||||| ||||||||||    
T  33343115 tgaatgcaaactatgttagtcaatttagtccctgaatgtagactttgttaatca-tttagttcctgaaattgaccaacagagttt 33343198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 44967983 - 44968043
Alignment:
Q  275 gtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 335  Q
    ||||||||||||| | ||||||||||   ||||||||||||||||||||||||||| ||||    
T  44967983 gtcaatttagtctttgaatgtagactctcttagtcactttaatccctgaaattgaccaaca 44968043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 339
Target Start/End: Complemental strand, 18445599 - 18445492
Alignment:
Q  232 atactttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgact 331  Q
    ||||| |||||||||| ||| |   ||||||||||||| |||  |||||||| || |  ||| ||||||  ||||||||| ||||||| |||||||||||    
T  18445599 atactatgttagtcaacttagtatctgaatgcagacttcgttaatcaatttaatcccagaatttagactcagttagtcacattaatccttgaaattgact 18445500  T
Q  332 aacagagt 339  Q
    ||||||||    
T  18445499 aacagagt 18445492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 324
Target Start/End: Original strand, 15031279 - 15031365
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 324  Q
    |||||||||||||| | | |||||||| |||  ||| |||||||||||| || |||||||||| ||||||||| |||| || |||||    
T  15031279 tgttagtcaatttagtccctgaatgcaaactccgttagtcaatttagtcactgaatgtagactccgttagtcaatttagtcactgaa 15031365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 335
Target Start/End: Complemental strand, 26498717 - 26498639
Alignment:
Q  257 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 335  Q
    |||||| |||||  ||| |||||||||||| || |||| | ||| |||||||||||||| |||||||||||||| ||||    
T  26498717 tgaatgtagactcggttagtcaatttagtcactgaatgcatactccgttagtcactttagtccctgaaattgaccaaca 26498639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 329
Target Start/End: Original strand, 26920248 - 26920337
Alignment:
Q  240 ttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattga 329  Q
    ||||| |||||| ||| | |||| | |||| ||| ||||||||||||  | ||||||| || | ||||||||||||||||||||||||||    
T  26920248 ttagttaatttagttcctcaatgtatacttcgttagtcaatttagtccttaaatgtaggctccattagtcactttaatccctgaaattga 26920337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 335
Target Start/End: Original strand, 38498222 - 38498291
Alignment:
Q  266 actttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 335  Q
    |||||||| |||||||||||| || ||||||||||   |||||||||||| ||||| ||||| |||||||    
T  38498222 actttgttagtcaatttagtccctgaatgtagactctattagtcactttagtccctaaaattaactaaca 38498291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 330
Target Start/End: Original strand, 21514835 - 21514927
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgac 330  Q
    ||||||| |||||| | | ||||||| ||||| ||| ||||||||||||  | ||||| ||||  |||||| |||||||||| ||||||||||    
T  21514835 tgttagttaatttagtccctgaatgcggacttcgttagtcaatttagtccttgaatgtggactctgttagttactttaatccatgaaattgac 21514927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 339
Target Start/End: Complemental strand, 41985049 - 41984992
Alignment:
Q  282 tagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagt 339  Q
    ||||| || ||| ||||||  ||||||||| ||||||| |||||||||||||||||||    
T  41985049 tagtccctgaatttagactcagttagtcacattaatccttgaaattgactaacagagt 41984992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 335
Target Start/End: Original strand, 20759083 - 20759115
Alignment:
Q  303 gttagtcactttaatccctgaaattgactaaca 335  Q
    ||||||||||||| |||||||||||||||||||    
T  20759083 gttagtcactttagtccctgaaattgactaaca 20759115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 238 - 337
Target Start/End: Complemental strand, 14197647 - 14197548
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 337  Q
    |||||||||||||||| | ||||||||||||  ||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||    
T  14197647 tgttagtcaatttaatccctgaatgcagactccgttagtcaatttagtctctcaatgtagactccgttagtcactttagtccctgaaattgaccaacaga 14197548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 238 - 339
Target Start/End: Original strand, 27508667 - 27508768
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 337  Q
    |||||||||||||| | | |||||||||||| |||| |||||||||||| || |||||||||| |||||||||||||| ||| |||||||||||||||||    
T  27508667 tgttagtcaatttagtccctgaatgcagactctgttagtcaatttagtccctgaatgtagactccgttagtcactttagtccatgaaattgactaacaga 27508766  T
Q  338 gt 339  Q
    ||    
T  27508767 gt 27508768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 234 - 333
Target Start/End: Complemental strand, 6441536 - 6441437
Alignment:
Q  234 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 333  Q
    |||||||||||||||||| | | |||||||||||| |||| ||||||||||||||| |||||||||| |||||||||||||  ||| |||||||||||||    
T  6441536 actttgttagtcaatttagtccctgaatgcagactctgttagtcaatttagtctctaaatgtagactccgttagtcacttttgtccttgaaattgactaa 6441437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 236 - 339
Target Start/End: Complemental strand, 45013038 - 45012935
Alignment:
Q  236 tttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 335  Q
    |||||||||||||||| | | ||||||||||||  ||| ||||||||| ||||| |||||||||| || || |||||||| |||||||||||||| || |    
T  45013038 tttgttagtcaatttagtccctgaatgcagactccgttagtcaatttaatctctgaatgtagactccgctaatcactttagtccctgaaattgaccaata 45012939  T
Q  336 gagt 339  Q
    ||||    
T  45012938 gagt 45012935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 250 - 335
Target Start/End: Complemental strand, 43257440 - 43257355
Alignment:
Q  250 taattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 335  Q
    |||| |||||||  ||||| |||| |||||||||||| || |||||||||||||||||||| |||| |||||||||||||| ||||    
T  43257440 taatccttgaatatagactctgttagtcaatttagtccctaaatgtagacttcgttagtcaatttactccctgaaattgaccaaca 43257355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 339
Target Start/End: Complemental strand, 38761184 - 38761079
Alignment:
Q  234 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 333  Q
    ||||||||| |||||||| | || ||||||||||| |||| |||||||||||| || |||| |||||  ||||||||||||| ||||  |||||||  ||    
T  38761184 actttgttaatcaatttagtcctcgaatgcagactctgttagtcaatttagtccctgaatgcagactctgttagtcactttagtcccaaaaattgatcaa 38761085  T
Q  334 cagagt 339  Q
    ||||||    
T  38761084 cagagt 38761079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 339
Target Start/End: Complemental strand, 5080295 - 5080196
Alignment:
Q  240 ttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagt 339  Q
    |||||||||||| | | ||||||||||||  |||  ||||||||||  || |||||||||| ||||| ||| |||| ||| |||||||||||||||||||    
T  5080295 ttagtcaatttagtccctgaatgcagactccgttaatcaatttagtacctgaatgtagactccgttaatcattttagtccttgaaattgactaacagagt 5080196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 37787879 - 37787778
Alignment:
Q  234 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 333  Q
    |||||||||||||||||| | | |||||||| ||| |||| ||||||||||||  | |||||||||| || |||||| |||||||  | |||||||| ||    
T  37787879 actttgttagtcaatttagtccctgaatgcatactctgttagtcaatttagtcgttgaatgtagactccgctagtcattttaatctttaaaattgacaaa 37787780  T
Q  334 ca 335  Q
    ||    
T  37787779 ca 37787778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 330
Target Start/End: Original strand, 15000737 - 15000829
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgac 330  Q
    ||||||||| |||| | |||||||| |||||  | | |||||||||||| || |||||||||| |||| | ||||||| ||||||||||||||    
T  15000737 tgttagtcagtttagtccttgaatgaagactccgatagtcaatttagtcccttaatgtagactccgttggacactttagtccctgaaattgac 15000829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 335
Target Start/End: Original strand, 36150933 - 36151004
Alignment:
Q  264 agactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 335  Q
    ||||| |||| ||||||||||||||| |||||| ||| ||||||||| |||| ||| |||||||||| ||||    
T  36150933 agactctgttagtcaatttagtctctgaatgtaaactccgttagtcattttagtccttgaaattgaccaaca 36151004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 45013049 - 45012982
Alignment:
Q  257 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 324  Q
    |||||| ||| |||||| |||||||||||| || |||| ||||| ||||||||| ||||||| |||||    
T  45013049 tgaatgtagagtttgttagtcaatttagtccctgaatgcagactccgttagtcaatttaatctctgaa 45012982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 238 - 341
Target Start/End: Complemental strand, 10380783 - 10380680
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 337  Q
    |||||||||||||||| | ||||||||||||| ||| |||||||||||| || ||||||||||  ||||||||||||| |||||||||||||| |||| |    
T  10380783 tgttagtcaatttaatccctgaatgcagacttcgttagtcaatttagtccctaaatgtagactcagttagtcactttagtccctgaaattgaccaacaaa 10380684  T
Q  338 gttt 341  Q
    ||||    
T  10380683 gttt 10380680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 238 - 341
Target Start/End: Original strand, 5448287 - 5448390
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 337  Q
    |||||||||||||| | | || |||||||||  |||||||||||||||| || ||| |||||||| |||||||||||| | |||||||||||| ||||||    
T  5448287 tgttagtcaatttagtccctggatgcagactccgttggtcaatttagtccctgaatatagacttcattagtcactttagttcctgaaattgaccaacaga 5448386  T
Q  338 gttt 341  Q
    ||||    
T  5448387 gttt 5448390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 238 - 337
Target Start/End: Complemental strand, 18830762 - 18830663
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 337  Q
    |||||||| ||||| | | ||||||||||||| ||| |||||||||||| || |||||||||| | |||||||||||| |||||||||||||| ||||||    
T  18830762 tgttagtccatttagtccctgaatgcagacttcgttagtcaatttagtccctgaatgtagactccattagtcactttagtccctgaaattgaccaacaga 18830663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 339
Target Start/End: Complemental strand, 5324871 - 5324770
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 337  Q
    |||||||||||||| ||| |||||||||||| |||| ||||||||||||  | |||||| |||  ||| ||||||||| |||||||||||||| ||||||    
T  5324871 tgttagtcaatttagttcatgaatgcagactctgttagtcaatttagtccttgaatgtaaactctgttcgtcactttagtccctgaaattgaccaacaga 5324772  T
Q  338 gt 339  Q
    ||    
T  5324771 gt 5324770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 238 - 330
Target Start/End: Complemental strand, 2634212 - 2634120
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgac 330  Q
    |||||||||||||| | | |||||||||||| |||| |||||||||||| || ||||||||||| |||| |||||||| || |||||||||||    
T  2634212 tgttagtcaatttagtccctgaatgcagactctgttcgtcaatttagtccctgaatgtagactttgttaatcactttagtcgctgaaattgac 2634120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 238 - 335
Target Start/End: Original strand, 11821814 - 11821911
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 335  Q
    ||||||| |||||| | | |||||||||| || ||| ||||||||||||| | ||||||||||  ||||||||||||| |||||||||||||| ||||    
T  11821814 tgttagttaatttagtccctgaatgcagatttcgttagtcaatttagtctatgaatgtagactctgttagtcactttagtccctgaaattgaccaaca 11821911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 1387470 - 1387369
Alignment:
Q  234 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 333  Q
    ||||||||||||| |||| ||| |||||||| ||   ||| |||||||||||  |  ||||||||||||||||||||||||| ||||| | |||||||||    
T  1387470 actttgttagtcactttagttcctgaatgcaaaccccgttagtcaatttagttccggaatgtagacttcgttagtcactttagtccctaatattgactaa 1387371  T
Q  334 ca 335  Q
    ||    
T  1387370 ca 1387369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 314
Target Start/End: Original strand, 3370056 - 3370132
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcacttt 314  Q
    |||||||||||||| | | ||||||||||||| ||| ||||||||||||||| ||||||||||   |||||||||||    
T  3370056 tgttagtcaatttagtccctgaatgcagacttcgttagtcaatttagtctcttaatgtagactctattagtcacttt 3370132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 1387511 - 1387444
Alignment:
Q  257 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 324  Q
    |||||||||||| |||| |||||||||||| || ||||||||||| ||||||||||||| | ||||||    
T  1387511 tgaatgcagactctgttagtcaatttagtcgctgaatgtagactttgttagtcactttagttcctgaa 1387444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 339
Target Start/End: Original strand, 9826717 - 9826824
Alignment:
Q  232 atactttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgact 331  Q
    ||||| |||||||||| ||| |   ||||||||||||| |||  |||||||| || || ||| ||||||  ||||||||| ||||||| |||||||||||    
T  9826717 atactatgttagtcaacttagtatctgaatgcagacttcgttaatcaatttaatccctgaatttagactcagttagtcacattaatccttgaaattgact 9826816  T
Q  332 aacagagt 339  Q
    ||||||||    
T  9826817 aacagagt 9826824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 324
Target Start/End: Complemental strand, 37695120 - 37695034
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 324  Q
    ||||||||||||||||  ||||||||||||| |||| ||||||||| || || |||| ||||  ||||||||| |||| ||||||||    
T  37695120 tgttagtcaatttaatcgttgaatgcagactctgttagtcaatttaatccctaaatgcagaccccgttagtcaatttagtccctgaa 37695034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 30471006 - 30470909
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 335  Q
    ||||| |||||||| | | ||||||||||||  |||  |||||||||||  | ||||||||||  ||||||||||||| |||||||||||||| ||||    
T  30471006 tgttaatcaatttagtccctgaatgcagactccgttaatcaatttagtcattgaatgtagactctgttagtcactttagtccctgaaattgaccaaca 30470909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 240 - 336
Target Start/End: Original strand, 18500691 - 18500787
Alignment:
Q  240 ttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacag 336  Q
    |||| ||||||||| | |||||| ||||| |||| |||||||||||| || ||| ||||||  |||| |||||||| || ||||||||||| |||||    
T  18500691 ttagccaatttaatccctgaatgtagactctgttagtcaatttagtccctgaatttagactctgttaatcactttagtctctgaaattgaccaacag 18500787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 337
Target Start/End: Complemental strand, 22018051 - 22017971
Alignment:
Q  257 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 337  Q
    |||||| ||||| |||| ||| ||||||||||| |||||| ||| ||||| |||||||| ||| |||||||||| ||||||    
T  22018051 tgaatgtagactatgttagtctatttagtctctgaatgtatactccgttaatcactttagtccttgaaattgaccaacaga 22017971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 335
Target Start/End: Complemental strand, 10757739 - 10757661
Alignment:
Q  257 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 335  Q
    ||||||||||||  ||| |||||||||||| || ||||||||||  |||| ||||| |||||||||| |||||| ||||    
T  10757739 tgaatgcagactccgttagtcaatttagtccctgaatgtagactctgttaatcactataatccctgagattgaccaaca 10757661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 335
Target Start/End: Complemental strand, 10970910 - 10970832
Alignment:
Q  257 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 335  Q
    ||||||||||||  ||| |||||||||||| || ||||||||||  |||| ||||| |||||||||| |||||| ||||    
T  10970910 tgaatgcagactccgttagtcaatttagtccctgaatgtagactctgttaatcactataatccctgagattgaccaaca 10970832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 341
Target Start/End: Original strand, 47144781 - 47144883
Alignment:
Q  239 gttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagag 338  Q
    ||||||||||||| | |||||||  |||||  |||  ||||||||||  || |||| ||||| |||| ||||||||| ||| ||||||||||||||| ||    
T  47144781 gttagtcaatttagtccttgaataaagactccgttaatcaatttagttcctgaatgcagactccgttggtcactttagtccttgaaattgactaacaaag 47144880  T
Q  339 ttt 341  Q
    |||    
T  47144881 ttt 47144883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 339
Target Start/End: Original strand, 2063237 - 2063338
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 337  Q
    |||||||||||||| |   |||||||| |||  ||| |||||||||||| || |||||||| || ||||||||||||| ||  | |||||||| ||||||    
T  2063237 tgttagtcaatttagtctctgaatgcaaactccgttagtcaatttagtccctaaatgtagaatttgttagtcactttagtctttaaaattgaccaacaga 2063336  T
Q  338 gt 339  Q
    ||    
T  2063337 gt 2063338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 337
Target Start/End: Complemental strand, 2232558 - 2232461
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 337  Q
    |||||||||||||||| | ||  || ||||| |||| | |||||||||| || |||||||||||  ||| |||||||| |||||||||||||| ||||||    
T  2232558 tgttagtcaatttaatccctggttg-agactctgttagccaatttagtccctgaatgtagacttt-ttaatcactttagtccctgaaattgaccaacaga 2232461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 315
Target Start/End: Complemental strand, 8951189 - 8951131
Alignment:
Q  257 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcacttta 315  Q
    |||||| ||| |||||| |||||||||||  || |||||||||||||||||||| ||||    
T  8951189 tgaatgtagattttgttagtcaatttagttccttaatgtagacttcgttagtcatttta 8951131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 336
Target Start/End: Complemental strand, 18836466 - 18836369
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacag 336  Q
    |||||||| ||||| | | ||||||||||||  ||| |||| ||||||| || |||||||||| | |||||||||||| ||| | |||||||| |||||    
T  18836466 tgttagtccatttagtccctgaatgcagactccgttagtca-tttagtccctgaatgtagactccattagtcactttagtccataaaattgaccaacag 18836369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 18830777 - 18830708
Alignment:
Q  255 cttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 324  Q
    |||||||| ||| | |||| ||| |||||||| || |||| ||||||||||||||| |||| ||||||||    
T  18830777 cttgaatgtagattctgttagtccatttagtccctgaatgcagacttcgttagtcaatttagtccctgaa 18830708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 330
Target Start/End: Original strand, 30378852 - 30378924
Alignment:
Q  257 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgac 330  Q
    |||||||||||| |||| ||||||| |||| || ||| |||||| |||||||||||||| |  |||||||||||    
T  30378852 tgaatgcagactctgttagtcaattcagtccctgaat-tagactccgttagtcactttagtgtctgaaattgac 30378924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 37695088 - 37694991
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 335  Q
    |||||||||||||||| | | |||||||||   ||| |||||||||||| || ||| ||||||   |||||||||||| || || |||||||| ||||    
T  37695088 tgttagtcaatttaatccctaaatgcagaccccgttagtcaatttagtccctgaatatagactctattagtcactttagtcacttaaattgaccaaca 37694991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 47943640 - 47943539
Alignment:
Q  234 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 333  Q
    |||| ||||||||||||| |||||||||||||     ||| ||||||||| || || ||||||||||  |||| ||||| || ||||| |||||||| ||    
T  47943640 acttggttagtcaatttagttcttgaatgcaggaaccgttagtcaatttaatccctgaatgtagactatgttaatcactatagtccctaaaattgaccaa 47943541  T
Q  334 ca 335  Q
    ||    
T  47943540 ca 47943539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 55382748 - 55382667
Alignment:
Q  234 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcacttta 315  Q
    |||||||||||||||||  | | | |||||||| |  ||| |||||||||||| ||  ||||||||| ||||||||||||||    
T  55382748 actttgttagtcaattttgtccctaaatgcagattccgttagtcaatttagtccctggatgtagactccgttagtcacttta 55382667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 3370045 - 3370101
Alignment:
Q  259 aatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcacttta 315  Q
    |||| ||||| |||| |||||||||||| || |||| ||||||||||||||| ||||    
T  3370045 aatgtagactctgttagtcaatttagtccctgaatgcagacttcgttagtcaattta 3370101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407 (Bit Score: 57; Significance: 9e-24; HSPs: 6)
Name: scaffold0407
Description:

Target: scaffold0407; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 239 - 339
Target Start/End: Complemental strand, 1022 - 922
Alignment:
Q  239 gttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagag 338  Q
    ||||||||||||| | | ||||||||||||| ||| ||||||||| || || ||||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  1022 gttagtcaatttagtccctgaatgcagacttcgttagtcaatttaatccctgaatgtagactttgttagtcactttagtccctgaaattgactaatagag 923  T
Q  339 t 339  Q
    |    
T  922 t 922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 239 - 339
Target Start/End: Complemental strand, 7486 - 7386
Alignment:
Q  239 gttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagag 338  Q
    ||||||||||||| | | ||||||||||||| ||| ||||||||| || || ||||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  7486 gttagtcaatttagtccctgaatgcagacttcgttagtcaatttaatccctgaatgtagactttgttagtcactttagtccctgaaattgactaatagag 7387  T
Q  339 t 339  Q
    |    
T  7386 t 7386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 324
Target Start/End: Complemental strand, 1059 - 969
Alignment:
Q  234 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 324  Q
    ||||| ||| |||||||| | | |||||||||| || ||| |||||||||||| || |||| ||||||||||||||| |||||||||||||    
T  1059 actttattattcaatttagtccctgaatgcagatttcgttagtcaatttagtccctgaatgcagacttcgttagtcaatttaatccctgaa 969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 324
Target Start/End: Complemental strand, 7523 - 7433
Alignment:
Q  234 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 324  Q
    ||||| ||| |||||||| | | |||||||||| || ||| |||||||||||| || |||| ||||||||||||||| |||||||||||||    
T  7523 actttattattcaatttagtccctgaatgcagatttcgttagtcaatttagtccctgaatgcagacttcgttagtcaatttaatccctgaa 7433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 995 - 943
Alignment:
Q  234 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtc 286  Q
    |||| ||||||||||||||| | |||||| |||||||||| |||| |||||||    
T  995 acttcgttagtcaatttaatccctgaatgtagactttgttagtcactttagtc 943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 7459 - 7407
Alignment:
Q  234 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtc 286  Q
    |||| ||||||||||||||| | |||||| |||||||||| |||| |||||||    
T  7459 acttcgttagtcaatttaatccctgaatgtagactttgttagtcactttagtc 7407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 238 - 330
Target Start/End: Original strand, 2555530 - 2555622
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgac 330  Q
    |||||||||||||| |  |||||||||||||| ||| ||||| |||||| || || |||||||||||||||||||||||||||||||||||||    
T  2555530 tgttagtcaatttagtcgttgaatgcagacttcgttagtcaaattagtccctgaacgtagacttcgttagtcactttaatccctgaaattgac 2555622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 339
Target Start/End: Original strand, 30852670 - 30852771
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 337  Q
    |||||||||||||| | | ||||||||||||| ||  ||||||||||||||| |||||||| | |||||||||||||| | | |||||||||| ||||||    
T  30852670 tgttagtcaatttagtccctgaatgcagacttcgtaagtcaatttagtctctgaatgtagattccgttagtcactttagttcatgaaattgaccaacaga 30852769  T
Q  338 gt 339  Q
    ||    
T  30852770 gt 30852771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 238 - 335
Target Start/End: Original strand, 17497086 - 17497183
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 335  Q
    |||||||||||||| | |||||||||||| | |||| || ||||||||| || |||||||||| |||  ||||||||| |||||||||||||| ||||    
T  17497086 tgttagtcaatttagtccttgaatgcagattctgttagttaatttagtccctgaatgtagactccgtcggtcactttagtccctgaaattgaccaaca 17497183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 232 - 339
Target Start/End: Original strand, 19491757 - 19491864
Alignment:
Q  232 atactttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgact 331  Q
    ||||| |||||||||| ||| |   ||||||||||||| |||  ||||||||||| || ||| ||||||  ||||||||| ||||||| |||||||||||    
T  19491757 atactatgttagtcaacttagtatctgaatgcagacttcgttaatcaatttagtccctgaatttagactcagttagtcacattaatccttgaaattgact 19491856  T
Q  332 aacagagt 339  Q
    ||||||||    
T  19491857 aacagagt 19491864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 315
Target Start/End: Original strand, 12895615 - 12895695
Alignment:
Q  234 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcacttta 315  Q
    |||||||||||||||||||| ||| |||||||||| |||| ||||||||||| | | |||||||||||||||| | ||||||    
T  12895615 actttgttagtcaatttaatccttaaatgcagactctgttagtcaatttagt-tataaatgtagacttcgttaattacttta 12895695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 21943931 - 21943834
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 335  Q
    ||||| |||||||| | | |||||||| |||||||| ||||||||||||| | |||||||| |  |||| |||||||| ||||| |||||||||||||    
T  21943931 tgttaatcaatttagtccctgaatgcatactttgttagtcaatttagtctttgaatgtagattatgttaatcactttagtccctaaaattgactaaca 21943834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 339
Target Start/End: Complemental strand, 20430064 - 20429964
Alignment:
Q  239 gttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagag 338  Q
    ||||||||||||| ||| |||||||||||| |||| || |||||||| | | |||||| |||  ||| ||||||||| ||| |||||||||| |||||||    
T  20430064 gttagtcaatttagttcatgaatgcagactctgttagttaatttagtttttgaatgtaaactctgttcgtcactttagtccttgaaattgaccaacagag 20429965  T
Q  339 t 339  Q
    |    
T  20429964 t 20429964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 329
Target Start/End: Complemental strand, 19564847 - 19564752
Alignment:
Q  234 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattga 329  Q
    |||| ||||||||||||| | ||||| | || |||  ||| ||||||||||||||| |||||||||| | ||| |||||||| |||||||||||||    
T  19564847 acttcgttagtcaatttattccttgattccatactccgttagtcaatttagtctctgaatgtagactccattaatcactttagtccctgaaattga 19564752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 339
Target Start/End: Complemental strand, 13753413 - 13753316
Alignment:
Q  242 agtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagt 339  Q
    |||||||||| | ||| ||||||||||  ||| |||||||||| | || || ||||||| | | |||||||||| |||||||||||||| ||||||||    
T  13753413 agtcaatttagtccttaaatgcagactccgttagtcaatttagcccctgaaagtagactccatcagtcactttagtccctgaaattgaccaacagagt 13753316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 341
Target Start/End: Complemental strand, 10760191 - 10760093
Alignment:
Q  242 agtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagttt 341  Q
    |||||||||| | | ||||||||||||  ||| |||||||||||| || |||||||||| ||||| ||| |||| ||| |||||||||| |||| |||||    
T  10760191 agtcaatttagtccctgaatgcagactccgttagtcaatttagtccctgaatgtagactccgttaatca-tttagtccttgaaattgaccaacaaagttt 10760093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 335
Target Start/End: Complemental strand, 21211565 - 21211508
Alignment:
Q  278 aatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 335  Q
    |||||||||||| |||||||| | |||||||||||||| | |||||||||||| ||||    
T  21211565 aatttagtctctgaatgtagattgcgttagtcactttagttcctgaaattgaccaaca 21211508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 334
Target Start/End: Complemental strand, 31912367 - 31912288
Alignment:
Q  255 cttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaac 334  Q
    ||||||| ||||||  ||| ||||||||||||  | | ||||||||  ||||||||||||| ||| ||||||||||||||    
T  31912367 cttgaatacagactccgttagtcaatttagtcatttactgtagactctgttagtcactttagtccatgaaattgactaac 31912288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 32539429 - 32539375
Alignment:
Q  232 atactttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtc 286  Q
    |||||| ||||||||||||| |||||||||| ||||| |||| |||| |||||||    
T  32539429 atacttcgttagtcaatttagttcttgaatgtagactatgttagtcactttagtc 32539375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 335
Target Start/End: Original strand, 11298050 - 11298147
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 335  Q
    |||||||||||||| |   ||||||||||||   || |||||||||||  || ||||||||||  |||| |||||||||||  | |||||||||||||    
T  11298050 tgttagtcaatttagtctctgaatgcagactccattagtcaatttagttcctgaatgtagactctgttaatcactttaatctttaaaattgactaaca 11298147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 335
Target Start/End: Original strand, 34419595 - 34419668
Alignment:
Q  262 gcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 335  Q
    |||||||| ||| ||||||||||||  | ||||||||||  ||| |||| |||| |||||||||||||| ||||    
T  34419595 gcagacttcgttagtcaatttagtccttaaatgtagactctgttggtcattttagtccctgaaattgaccaaca 34419668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 329
Target Start/End: Complemental strand, 30100780 - 30100708
Alignment:
Q  257 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattga 329  Q
    ||||||||||||   || |||||| ||||| || ||||||||||  ||| ||||||||| |||||||||||||    
T  30100780 tgaatgcagactccattagtcaatatagtccctgaatgtagactctgtttgtcactttagtccctgaaattga 30100708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 238 - 337
Target Start/End: Original strand, 31820005 - 31820104
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 337  Q
    |||||||| ||||| | |||||||||||||||| || ||||||||||||||| |||||| ||| ||||| |||||||| ||||| |||||||||||||||    
T  31820005 tgttagtccatttagtccttgaatgcagactttcttagtcaatttagtctctgaatgtatactccgttaatcactttagtccctaaaattgactaacaga 31820104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 32092928 - 32092846
Alignment:
Q  257 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagt 339  Q
    |||||| ||||| |||| |||||||||||| || ||||||||||||||||||||||||| | ||||| |||||| ||||||||    
T  32092928 tgaatgtagactctgttagtcaatttagtccctgaatgtagacttcgttagtcactttagttcctgagattgacaaacagagt 32092846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 339
Target Start/End: Original strand, 17914076 - 17914165
Alignment:
Q  250 taattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagt 339  Q
    |||| |||||||| ||| |||||| |||||||||| | || |||||||| || |||||||||||||||| || ||||||||||| |||||    
T  17914076 taatccttgaatgtagattttgttagtcaatttagaccctaaatgtagattttgttagtcactttaatcactaaaattgactaatagagt 17914165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 39598699 - 39598598
Alignment:
Q  234 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 333  Q
    |||||||| ||||||||| |   |||||| | |||  ||| |||||||||||| || |||||||||| |||||||||||||| ||||| |||||||||||    
T  39598699 actttgttggtcaatttagtcgctgaatgtatactccgttagtcaatttagtccctgaatgtagactccgttagtcactttagtccctaaaattgactaa 39598600  T
Q  334 ca 335  Q
    ||    
T  39598599 ca 39598598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 337
Target Start/End: Original strand, 22092951 - 22093050
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 337  Q
    ||||||||| |||| ||| ||||||||||||   || |||||||||||| || ||| |||||| |||| ||||||||| |||||||| ||||| ||||||    
T  22092951 tgttagtcagtttagttcctgaatgcagactccattcgtcaatttagtccctgaatatagactccgtttgtcactttagtccctgaatttgaccaacaga 22093050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 39598708 - 39598641
Alignment:
Q  257 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 324  Q
    |||||| ||||||||||||||||||||||| || |||||| ||| ||||||||| |||| ||||||||    
T  39598708 tgaatgtagactttgttggtcaatttagtcgctgaatgtatactccgttagtcaatttagtccctgaa 39598641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 324
Target Start/End: Original strand, 8219214 - 8219284
Alignment:
Q  254 tcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 324  Q
    ||||||||| ||||| |||| ||||||||||| ||| |||| ||||| ||||||||| |||||||||||||    
T  8219214 tcttgaatgtagactctgttagtcaatttagtttctgaatgcagactccgttagtcaatttaatccctgaa 8219284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 31499538 - 31499441
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 335  Q
    ||||||||| |||| ||  ||||||||||||  ||| ||||||||||||  | |||||||||||  || ||||||||  |||||||||||||| ||||    
T  31499538 tgttagtcattttagtttctgaatgcagactccgttagtcaatttagtccttgaatgtagactttatttgtcactttggtccctgaaattgaccaaca 31499441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 312
Target Start/End: Original strand, 8219230 - 8219304
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcact 312  Q
    |||||||||||||| ||  ||||||||||||  ||| ||||||||| || || ||||| |||| |||||||||||    
T  8219230 tgttagtcaatttagtttctgaatgcagactccgttagtcaatttaatccctgaatgtggactccgttagtcact 8219304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 339
Target Start/End: Complemental strand, 24007068 - 24006967
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 337  Q
    |||||||||||||| | | |||||||||| |  |||| ||||| ||||  || ||||||||||  |||| ||| |||| || |||||||||| |||||||    
T  24007068 tgttagtcaatttagtccatgaatgcagattccgttgatcaatgtagtacctgaatgtagactctgttaatcattttagtctctgaaattgagtaacaga 24006969  T
Q  338 gt 339  Q
    ||    
T  24006968 gt 24006967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 238 - 336
Target Start/End: Original strand, 37608063 - 37608161
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacag 336  Q
    |||||||||||||| | |||||||||||||| |||| ||||||||||||  | |||||||||| |||||||||||||  |||||||||||||| |||||    
T  37608063 tgttagtcaatttagtccttgaatgcagactctgttagtcaatttagtccttgaatgtagactccgttagtcactttggtccctgaaattgaccaacag 37608161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 339
Target Start/End: Original strand, 50335528 - 50335633
Alignment:
Q  234 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 333  Q
    |||||||||||||||||| | | ||||||||||||  ||| |||||||||||| || |||||||||| || || |||||||| ||||| |||||||| ||    
T  50335528 actttgttagtcaatttagtccctgaatgcagactccgttcgtcaatttagtccctgaatgtagactccgctaatcactttagtccctaaaattgaccaa 50335627  T
Q  334 cagagt 339  Q
    ||||||    
T  50335628 cagagt 50335633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 329
Target Start/End: Original strand, 13735536 - 13735627
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattga 329  Q
    |||||||||||||| |   ||||||||||||  ||| ||||||||||||  | |||||||||| |||||||||||||| |||||||||||||    
T  13735536 tgttagtcaatttagtctctgaatgcagactccgttagtcaatttagtcaataaatgtagactccgttagtcactttagtccctgaaattga 13735627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 50335519 - 50335586
Alignment:
Q  257 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 324  Q
    |||||| |||||||||| |||||||||||| || |||| ||||| |||| |||| |||| ||||||||    
T  50335519 tgaatgtagactttgttagtcaatttagtccctgaatgcagactccgttcgtcaatttagtccctgaa 50335586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 13735525 - 13735581
Alignment:
Q  259 aatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcacttta 315  Q
    |||| ||||| |||| ||||||||||||||| |||| ||||| ||||||||| ||||    
T  13735525 aatgtagactctgttagtcaatttagtctctgaatgcagactccgttagtcaattta 13735581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 300
Target Start/End: Complemental strand, 32374152 - 32374092
Alignment:
Q  240 ttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagact 300  Q
    |||||||||||| | | |||||||| ||| |||| |||||||||||| || ||||||||||    
T  32374152 ttagtcaatttagtccctgaatgcaaactctgttagtcaatttagtccctgaatgtagact 32374092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 339
Target Start/End: Complemental strand, 190370 - 190265
Alignment:
Q  234 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 333  Q
    |||||||||||||||||| ||| ||||| |||||| |||| |||||||||||| || |||||| |||  |||| ||| ||||||||||||||||||| ||    
T  190370 actttgttagtcaatttagttcctgaatacagactctgttagtcaatttagtccctaaatgtaaactatgttaatcaatttaatccctgaaattgaccaa 190271  T
Q  334 cagagt 339  Q
    ||||||    
T  190270 cagagt 190265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 238 - 327
Target Start/End: Original strand, 31253995 - 31254084
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaatt 327  Q
    |||||||||||||| | | |||||||||||| |||| |||||||||||| || |||||||| || |||||||||||||||||||||||||    
T  31253995 tgttagtcaatttagtccctgaatgcagactctgttagtcaatttagtccctaaatgtagattttgttagtcactttaatccctgaaatt 31254084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 238 - 339
Target Start/End: Original strand, 35202689 - 35202791
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctc-tcaatgtagacttcgttagtcactttaatccctgaaattgactaacag 336  Q
    |||||||||||||| ||| |||||||||| | |||| |||||||||||| | | |||||||||| |||||||||||||| | |||||||||||| |||||    
T  35202689 tgttagtcaatttagttcctgaatgcagattctgttagtcaatttagtcccctgaatgtagactccgttagtcactttagttcctgaaattgaccaacag 35202788  T
Q  337 agt 339  Q
    |||    
T  35202789 agt 35202791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 333
Target Start/End: Complemental strand, 4289113 - 4289018
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 333  Q
    |||||||||||||| |   | |||||||||| ||||  |||||||||||| | ||||||||||  |||||||||||||||||||||||||||||||    
T  4289113 tgttagtcaatttagtctctaaatgcagactatgttaatcaatttagtctttgaatgtagactctgttagtcactttaatccctgaaattgactaa 4289018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 238 - 339
Target Start/End: Complemental strand, 23976279 - 23976178
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 337  Q
    ||||||||||||||   | ||||||||||||  |||||||||||||| | || ||||||||    ||||||||||||| |||||||||||||||||||||    
T  23976279 tgttagtcaatttagcccctgaatgcagactccgttggtcaatttagcccctgaatgtagatcatgttagtcactttactccctgaaattgactaacaga 23976180  T
Q  338 gt 339  Q
    ||    
T  23976179 gt 23976178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 333
Target Start/End: Complemental strand, 41358870 - 41358775
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 333  Q
    ||||| |||||||| | | |||||||||||||| || || | ||| |||||| ||||||||||| ||||||||||||| || ||||||||||||||    
T  41358870 tgttaatcaatttagtccatgaatgcagactttatttgttacttttgtctctgaatgtagactttgttagtcactttagtctctgaaattgactaa 41358775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 339
Target Start/End: Original strand, 18324084 - 18324189
Alignment:
Q  234 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 333  Q
    ||||| |||||||||||| ||| |||||||| |||  ||| ||||||||||||  | |||||||||| |||||||||||||| | | |||||||||| |     
T  18324084 actttattagtcaatttagttcctgaatgcaaactccgttagtcaatttagtccttaaatgtagactccgttagtcactttagttcatgaaattgaccag 18324183  T
Q  334 cagagt 339  Q
    ||||||    
T  18324184 cagagt 18324189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 339
Target Start/End: Complemental strand, 25149430 - 25149325
Alignment:
Q  234 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaa 333  Q
    |||||||||||||||||| |   |||||||||||| |||| ||||| |||||| || || ||||||  |||| ||||||||| ||| |||||||||| ||    
T  25149430 actttgttagtcaatttagtctctgaatgcagactctgttagtcaagttagtccctgaacgtagacaccgttcgtcactttagtccttgaaattgaccaa 25149331  T
Q  334 cagagt 339  Q
    ||||||    
T  25149330 cagagt 25149325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 29585642 - 29585574
Alignment:
Q  234 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttc 302  Q
    ||||||||| |||||||| | | ||||||||||||||||| |||||||||||| || ||||||||||||    
T  29585642 actttgttattcaatttagtccctgaatgcagactttgttagtcaatttagtccctgaatgtagacttc 29585574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 330
Target Start/End: Complemental strand, 37543984 - 37543888
Alignment:
Q  234 actttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgac 330  Q
    |||||||||||||||||||| | |||||||||| |  ||| || ||||||||| || ||| |||||| ||||| |||||||| ||| ||||||||||    
T  37543984 actttgttagtcaatttaatccctgaatgcagattccgttagttaatttagtccctgaatatagactccgttaatcactttagtccatgaaattgac 37543888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 339
Target Start/End: Complemental strand, 22469620 - 22469520
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 337  Q
    |||||||||||||||| | ||||| || |||   || |||||||||||| || ||| || ||| |||||||||| |||||||||||||||||| ||||||    
T  22469620 tgttagtcaatttaatccctgaattcaaactccattagtcaatttagtccctgaat-taaactccgttagtcaccttaatccctgaaattgaccaacaga 22469522  T
Q  338 gt 339  Q
    ||    
T  22469521 gt 22469520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 24609214 - 24609134
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatc 318  Q
    |||||||||||||| ||||| |||||||||| ||||  | |||||||||||| ||||||||||   |||||| ||||||||    
T  24609214 tgttagtcaatttagttcttaaatgcagactctgttaattaatttagtctctgaatgtagactcaattagtcgctttaatc 24609134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 12107012 - 12106954
Alignment:
Q  281 ttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagt 339  Q
    |||||| || |||||||||| |||| ||||||||| |||||||||||||| ||||||||    
T  12107012 ttagtccctaaatgtagactgcgttcgtcactttagtccctgaaattgaccaacagagt 12106954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 320
Target Start/End: Original strand, 21124420 - 21124500
Alignment:
Q  240 ttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccc 320  Q
    |||||||||||| | | ||||||||||||| ||| |||||||||||| |  | |||||||| ||||||||| |||| ||||    
T  21124420 ttagtcaatttagtccctgaatgcagacttcgttagtcaatttagtcccctagtgtagactccgttagtcaatttagtccc 21124500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 25149439 - 25149372
Alignment:
Q  257 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 324  Q
    |||||| |||||||||| ||||||||||||||| |||| |||||  ||||||||  ||| ||||||||    
T  25149439 tgaatgtagactttgttagtcaatttagtctctgaatgcagactctgttagtcaagttagtccctgaa 25149372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 29585651 - 29585584
Alignment:
Q  257 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 324  Q
    |||||| ||||||||||  ||||||||||| || |||| |||||| |||||||| |||| ||||||||    
T  29585651 tgaatgtagactttgttattcaatttagtccctgaatgcagactttgttagtcaatttagtccctgaa 29585584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 37494465 - 37494396
Alignment:
Q  270 tgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagt 339  Q
    |||| |||||||||||| || |||| ||||||| ||||||| || | ||||| |||||||| ||||||||    
T  37494465 tgttagtcaatttagtccctgaatgcagacttcattagtcaattcactccctaaaattgaccaacagagt 37494396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 19295469 - 19295372
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 335  Q
    |||||||||||||| | | |||||||||||||  || |||||||||||| || |||||||||| |||| ||||||||| |||||||||||||||||||    
T  19295469 tgttagtcaatttagtccctgaatgcagacttcattagtcaatttagtccctgaatgtagactccgttggtcactttagtccctgaaattgactaaca 19295372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 232 - 339
Target Start/End: Complemental strand, 21222659 - 21222552
Alignment:
Q  232 atactttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgact 331  Q
    ||||| |||||||||| ||| |   ||||||||||||| ||| |||||||||||| || ||||||||||  ||||||||| ||||||| |||||||||||    
T  21222659 atactatgttagtcaacttagtctctgaatgcagacttcgttagtcaatttagtccctgaatgtagactcagttagtcacattaatccttgaaattgact 21222560  T
Q  332 aacagagt 339  Q
    ||||||||    
T  21222559 aacagagt 21222552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 238 - 335
Target Start/End: Original strand, 25089243 - 25089340
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 335  Q
    |||||||||||||| |  |||||||||||||   || |||||||||||| || |||||||||||| |||||||||||| ||| |||||||||| ||||    
T  25089243 tgttagtcaatttagtcattgaatgcagactccattagtcaatttagtccctgaatgtagacttcattagtcactttagtccatgaaattgaccaaca 25089340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 330
Target Start/End: Original strand, 10862104 - 10862196
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgac 330  Q
    |||||||||||| ||| | |||| |||||||  ||| |||||||||||| || ||| ||||||  ||| ||||||||| ||||||||||||||    
T  10862104 tgttagtcaattcaatccctgaaggcagactccgttagtcaatttagtccctgaatatagactctgttcgtcactttagtccctgaaattgac 10862196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 327
Target Start/End: Complemental strand, 10672808 - 10672717
Alignment:
Q  236 tttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaatt 327  Q
    ||||||| |||||||| |   |||||||| | || ||| |||||||||||| || |||||||||||||||||||||| || | |||||||||    
T  10672808 tttgttaatcaatttagtctctgaatgcatatttcgttagtcaatttagtccctgaatgtagacttcgttagtcactatagttcctgaaatt 10672717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 19295482 - 19295415
Alignment:
Q  257 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 324  Q
    |||||||||||| |||| |||||||||||| || |||| ||||||| ||||||| |||| ||||||||    
T  19295482 tgaatgcagactctgttagtcaatttagtccctgaatgcagacttcattagtcaatttagtccctgaa 19295415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 339
Target Start/End: Original strand, 13536651 - 13536753
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctc-tcaatgtagacttcgttagtcactttaatccctgaaattgactaacag 336  Q
    |||||||||||||| | | ||||||||||||  ||| |||||||||| | | | ||||||||||  ||||||||||||| |||||||||| ||| || ||    
T  13536651 tgttagtcaatttagtccctgaatgcagactccgttagtcaatttagccccctgaatgtagactctgttagtcactttagtccctgaaatggaccaatag 13536750  T
Q  337 agt 339  Q
    |||    
T  13536751 agt 13536753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 12651269 - 12651194
Alignment:
Q  239 gttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcacttta 315  Q
    ||||||||||||  | | ||||||| |||| |||| |||||||||||||||  |||||||||| |||||||||||||    
T  12651269 gttagtcaatttggtccctgaatgccgactctgttagtcaatttagtctct-gatgtagactttgttagtcacttta 12651194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 26705156 - 26705216
Alignment:
Q  275 gtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 335  Q
    |||||||||||| || ||||||||   |||||||||||||| |||||||||||||| ||||    
T  26705156 gtcaatttagtccctgaatgtagaacccgttagtcactttagtccctgaaattgaccaaca 26705216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 21222666 - 21222599
Alignment:
Q  257 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 324  Q
    |||||| | ||| |||| ||||| ||||||||| |||| ||||||||||||||| |||| ||||||||    
T  21222666 tgaatgtatactatgttagtcaacttagtctctgaatgcagacttcgttagtcaatttagtccctgaa 21222599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 324
Target Start/End: Original strand, 26705089 - 26705173
Alignment:
Q  240 ttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 324  Q
    |||||||||||| | | |||||||||| || |||  ||||||||||| || ||| |||| | ||||||||| |||| ||||||||    
T  26705089 ttagtcaatttagtccctgaatgcagatttcgttaatcaatttagtccctgaatatagaatccgttagtcaatttagtccctgaa 26705173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 238 - 339
Target Start/End: Original strand, 314169 - 314270
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 337  Q
    |||||||||||||| | | ||||||||||||  ||| |||||||||||| || |||||||| |  ||||||||||||| ||||||||||| || ||||||    
T  314169 tgttagtcaatttagtccctgaatgcagactccgttagtcaatttagtccctgaatgtagagtctgttagtcactttagtccctgaaattaaccaacaga 314268  T
Q  338 gt 339  Q
    ||    
T  314269 gt 314270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 314158 - 314223
Alignment:
Q  259 aatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaa 324  Q
    |||| ||||| |||| |||||||||||| || |||| ||||| ||||||||| |||| ||||||||    
T  314158 aatgtagactctgttagtcaatttagtccctgaatgcagactccgttagtcaatttagtccctgaa 314223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 232 - 339
Target Start/End: Original strand, 57534 - 57641
Alignment:
Q  232 atactttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgact 331  Q
    ||||| |||||||||| ||| |   ||||||||||||| |||  ||||||||||| || ||| ||||||  ||||||||| ||||||| |||||||||||    
T  57534 atactatgttagtcaacttagtatctgaatgcagacttcgttaatcaatttagtccctgaatttagactcagttagtcacattaatccttgaaattgact 57633  T
Q  332 aacagagt 339  Q
    ||||||||    
T  57634 aacagagt 57641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1300 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 1460 - 1542
Alignment:
Q  257 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagt 339  Q
    ||||||||||||| ||| || ||||||||| || ||||||||||   |||||||| ||||||| |||||||||||||||||||    
T  1460 tgaatgcagacttcgttagttaatttagtccctgaatgtagactcaattagtcacattaatccttgaaattgactaacagagt 1542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 337
Target Start/End: Original strand, 23984 - 24082
Alignment:
Q  239 gttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacaga 337  Q
    ||||||||||||| | | |||||||||||| |||||||||||||||||  | |||||||||||  || ||||||||  ||| |||||||||| ||||||    
T  23984 gttagtcaatttagtccctgaatgcagactctgttggtcaatttagtccttgaatgtagactttattcgtcacttttgtccatgaaattgaccaacaga 24082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 59855 - 59792
Alignment:
Q  276 tcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagt 339  Q
    ||||||||||| || |||| ||||| ||||||||| |||| |||||||||||||||||||||||    
T  59855 tcaatttagtccctgaatgcagactccgttagtcaatttagtccctgaaattgactaacagagt 59792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 339
Target Start/End: Original strand, 127889 - 127996
Alignment:
Q  232 atactttgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgact 331  Q
    ||||| |||||||||| ||| |   ||||||||||||| |||  |||||||| || |  ||| ||||||  ||||||||| ||||||| |||||||||||    
T  127889 atactatgttagtcaacttagtatctgaatgcagacttcgttaatcaatttaatcccagaatttagactcagttagtcacattaatccttgaaattgact 127988  T
Q  332 aacagagt 339  Q
    ||||||||    
T  127989 aacagagt 127996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 27624 - 27576
Alignment:
Q  291 aatgtagacttcgttagtcactttaatccctgaaattgactaacagagt 339  Q
    ||||||||||||||| ||||||||| ||| |||||||||| ||||||||    
T  27624 aatgtagacttcgttcgtcactttagtccttgaaattgaccaacagagt 27576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 11683 - 11765
Alignment:
Q  257 tgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaacagagt 339  Q
    |||||| ||||| |||| | ||||||| ||||| |||||| | |  ||||||||||||| ||||| ||||||||||| |||||    
T  11683 tgaatgtagactatgttaggcaatttaatctctgaatgtatattctgttagtcactttagtccctaaaattgactaagagagt 11765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 335
Target Start/End: Original strand, 15456 - 15553
Alignment:
Q  238 tgttagtcaatttaattcttgaatgcagactttgttggtcaatttagtctctcaatgtagacttcgttagtcactttaatccctgaaattgactaaca 335  Q
    ||||||||||||||||   |||||| |||||  ||| | ||||||||||||| |||||||| |  || ||||  |||| | |||||||||||||||||    
T  15456 tgttagtcaatttaatctctgaatgtagactccgttagccaatttagtctctgaatgtagattctgtcagtcgttttagtacctgaaattgactaaca 15553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University